Wall clock time and date at job start Wed Apr 1 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 110.91372 * 2 1 4 4 N 1.46496 * 109.47134 * 297.54593 * 3 2 1 5 5 C 1.36933 * 120.00449 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99734 * 0.02562 * 5 4 3 7 7 C 1.38808 * 120.00600 * 179.97438 * 5 4 3 8 8 N 1.31619 * 120.00218 * 179.97438 * 7 5 4 9 9 Si 1.86810 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46997 * 89.99944 * 9 7 5 11 11 H 1.48497 * 109.46713 * 209.99779 * 9 7 5 12 12 H 1.48497 * 109.46788 * 329.99592 * 9 7 5 13 13 C 1.55448 * 111.01067 * 124.05153 * 2 1 3 14 14 C 1.54321 * 102.96961 * 82.52458 * 13 2 1 15 15 N 1.47026 * 107.26791 * 22.19024 * 14 13 2 16 16 C 1.34781 * 125.64203 * 181.03648 * 15 14 13 17 17 O 1.21692 * 119.99235 * 180.02562 * 16 15 14 18 18 C 1.46833 * 120.00553 * 0.02780 * 16 15 14 19 19 C 1.42393 * 128.40903 * 359.67440 * 18 16 15 20 20 N 1.29896 * 106.48370 * 179.84075 * 19 18 16 21 21 O 1.20729 * 112.91465 * 0.46086 * 20 19 18 22 22 C 1.34459 * 111.91053 * 359.70103 * 21 20 19 23 23 C 1.46428 * 127.24634 * 180.02562 * 22 21 20 24 24 C 1.36665 * 125.99189 * 359.69001 * 23 22 21 25 25 C 1.40436 * 106.70096 * 179.90644 * 24 23 22 26 26 C 1.35075 * 107.12331 * 0.35841 * 25 24 23 27 27 O 1.34081 * 108.77893 * 359.77708 * 26 25 24 28 28 C 1.47419 * 108.70576 * 1.06162 * 15 14 13 29 29 H 1.08997 * 109.46961 * 182.44877 * 1 2 3 30 30 H 1.09003 * 109.46792 * 302.45175 * 1 2 3 31 31 H 1.08997 * 109.46833 * 62.45143 * 1 2 3 32 32 H 1.09001 * 109.47578 * 57.55102 * 3 2 1 33 33 H 1.09003 * 109.46933 * 177.54830 * 3 2 1 34 34 H 0.97006 * 119.99700 * 0.02562 * 4 3 2 35 35 H 0.96999 * 119.99685 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.70855 * 324.15262 * 13 2 1 37 37 H 1.08998 * 110.85957 * 200.96877 * 13 2 1 38 38 H 1.08998 * 109.88101 * 262.77542 * 14 13 2 39 39 H 1.09000 * 109.88483 * 141.60664 * 14 13 2 40 40 H 1.08003 * 126.76226 * 359.97438 * 19 18 16 41 41 H 1.08002 * 126.65170 * 0.04565 * 24 23 22 42 42 H 1.08004 * 126.44072 * 180.13357 * 25 24 23 43 43 H 1.07997 * 125.61525 * 179.79927 * 26 25 24 44 44 H 1.09002 * 110.36926 * 94.70918 * 28 15 14 45 45 H 1.08995 * 110.36556 * 216.92202 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 7 1.6539 2.1134 -1.2246 5 6 2.0267 3.4121 -1.4468 6 1 2.6326 3.9319 -0.7193 7 6 1.6270 4.0602 -2.6074 8 7 1.9850 5.3087 -2.8206 9 14 0.5797 3.1608 -3.8660 10 1 -0.8571 3.3667 -3.5521 11 1 0.8711 3.6912 -5.2220 12 1 0.8927 1.7098 -3.8241 13 6 2.0874 -0.8125 1.2023 14 6 2.0290 -2.2683 0.6934 15 7 2.0136 -2.2167 -0.7759 16 6 1.9457 -3.2822 -1.5985 17 8 1.9400 -3.1201 -2.8046 18 6 1.8785 -4.6383 -1.0395 19 6 1.8798 -5.0322 0.3288 20 7 1.8031 -6.3288 0.3392 21 8 1.7637 -6.8063 -0.7690 22 6 1.8037 -5.8609 -1.7243 23 6 1.7747 -6.0642 -3.1741 24 6 1.7067 -7.2694 -3.8149 25 6 1.7001 -6.9945 -5.1921 26 6 1.7714 -5.6527 -5.3301 27 8 1.8162 -5.0952 -4.1115 28 6 2.0853 -0.8067 -1.2002 29 1 -0.3633 -1.0267 0.0439 30 1 -0.3633 0.5515 0.8672 31 1 -0.3633 0.4753 -0.9111 32 1 1.6909 1.9655 0.8672 33 1 3.1650 1.4021 0.0440 34 1 1.1100 1.6463 -1.8781 35 1 1.7054 5.7616 -3.6315 36 1 1.4541 -0.6852 2.0803 37 1 3.1144 -0.5225 1.4241 38 1 1.1223 -2.7519 1.0569 39 1 2.9067 -2.8163 1.0359 40 1 1.9319 -4.3810 1.1889 41 1 1.6639 -8.2442 -3.3519 42 1 1.6511 -7.7198 -5.9908 43 1 1.7890 -5.1170 -6.2676 44 1 3.1183 -0.5234 -1.4024 45 1 1.4684 -0.6447 -2.0841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699843542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:03 Heat of formation + Delta-G solvation = 56.186333 kcal Electronic energy + Delta-G solvation = -30417.507999 eV Core-core repulsion = 26212.576025 eV Total energy + Delta-G solvation = -4204.931974 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -46.15313 -43.55621 -41.37481 -39.25580 -36.69373 -35.38945 -34.43274 -34.24196 -33.59317 -32.66339 -30.54885 -30.01963 -28.23083 -27.73324 -25.89836 -24.55612 -24.43310 -23.28411 -22.49812 -22.29120 -20.63777 -20.46386 -19.74215 -19.25436 -19.00997 -18.42140 -17.29068 -17.14957 -17.00693 -16.78798 -16.58362 -15.91993 -15.75120 -15.51448 -15.20880 -15.11179 -14.70355 -14.56653 -14.02773 -13.87299 -13.81266 -13.76132 -13.53542 -13.45147 -13.27735 -12.95917 -12.88668 -12.80721 -12.70056 -12.21307 -11.91612 -11.85388 -11.72667 -11.61650 -11.55234 -11.51390 -11.23219 -10.99852 -10.89431 -9.78714 -9.28707 -9.25843 -8.04392 -5.35733 -0.82286 0.62032 0.86792 0.95815 1.33962 1.35968 1.42090 1.59928 1.70114 2.06856 2.44747 2.63085 2.97136 3.09056 3.25794 3.30196 3.42624 3.54136 3.71366 3.81220 3.89542 3.94125 3.97856 4.10726 4.21200 4.28216 4.28763 4.52174 4.59991 4.67299 4.70809 4.76678 4.85606 4.86167 4.93247 4.95562 5.05045 5.07659 5.13786 5.22668 5.26786 5.42636 5.42901 5.76094 6.01217 6.20469 6.35427 6.81651 6.96745 7.07260 7.84820 8.01066 9.17426 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.003110 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.003064 B = 9000.711499 C =10833.278707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 C 0.170 3.830 4 N -0.758 5.758 5 C -0.226 4.226 6 H 0.064 0.936 7 C -0.059 4.059 8 N -0.982 5.982 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.264 1.264 13 C -0.109 4.109 14 C 0.084 3.916 15 N -0.604 5.604 16 C 0.595 3.405 17 O -0.557 6.557 18 C -0.257 4.257 19 C 0.046 3.954 20 N -0.367 5.367 21 O 0.121 5.879 22 C 0.117 3.883 23 C -0.024 4.024 24 C -0.130 4.130 25 C -0.223 4.223 26 C -0.010 4.010 27 O -0.148 6.148 28 C 0.124 3.876 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.362 0.638 35 H 0.257 0.743 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.242 0.758 41 H 0.185 0.815 42 H 0.189 0.811 43 H 0.236 0.764 44 H 0.061 0.939 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 -30.577 5.969 31.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.077 4.077 3 C 0.044 3.956 4 N -0.404 5.404 5 C -0.357 4.357 6 H 0.082 0.918 7 C -0.251 4.251 8 N -0.634 5.634 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.189 1.189 13 C -0.146 4.146 14 C -0.037 4.037 15 N -0.337 5.337 16 C 0.384 3.616 17 O -0.436 6.436 18 C -0.264 4.264 19 C -0.133 4.133 20 N -0.073 5.073 21 O 0.061 5.939 22 C 0.051 3.949 23 C -0.074 4.074 24 C -0.150 4.150 25 C -0.241 4.241 26 C -0.080 4.080 27 O -0.042 6.042 28 C 0.001 3.999 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.196 0.804 35 H 0.066 0.934 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.258 0.742 41 H 0.202 0.798 42 H 0.207 0.793 43 H 0.252 0.748 44 H 0.079 0.921 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.526 -30.981 6.432 31.679 hybrid contribution -0.419 0.971 -1.860 2.140 sum -1.945 -30.010 4.572 30.419 Atomic orbital electron populations 1.21666 0.92946 1.01842 1.02020 1.21952 0.96622 0.93827 0.95308 1.20772 0.96799 0.89707 0.88291 1.42792 1.63896 1.11345 1.22370 1.19066 1.25287 0.88414 1.02914 0.91817 1.25362 1.02729 0.96708 1.00310 1.69855 1.52580 1.12464 1.28452 0.85596 0.79477 0.78761 0.79097 1.20191 1.22208 1.18892 1.22797 1.03615 0.91244 0.96991 1.22735 1.03769 0.99404 0.77768 1.48229 1.71837 1.05198 1.08435 1.16613 0.77056 0.82717 0.85232 1.90892 1.51700 1.85918 1.15132 1.21332 1.17048 0.93625 0.94371 1.25920 0.98492 0.91248 0.97612 1.73525 1.20618 1.13405 0.99707 1.84936 1.67444 1.32235 1.09332 1.21241 0.97504 0.87291 0.88890 1.18353 1.16069 0.87896 0.85115 1.22473 1.00415 0.97805 0.94341 1.22206 1.08714 0.96072 0.97138 1.25362 1.00629 0.94811 0.87177 1.84500 1.69442 1.35179 1.15118 1.22158 1.00493 0.79470 0.97731 0.91546 0.90547 0.94922 0.94029 0.95211 0.80435 0.93384 0.86504 0.89018 0.88467 0.88317 0.74163 0.79774 0.79342 0.74789 0.92061 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.43 71.98 0.61 -2.63 16 2 C -0.08 -1.97 0.63 -50.69 -0.03 -2.00 16 3 C 0.17 5.91 5.24 86.38 0.45 6.36 16 4 N -0.76 -34.89 4.98 -343.46 -1.71 -36.60 16 5 C -0.23 -12.81 10.47 84.03 0.88 -11.93 16 6 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 7 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 8 N -0.98 -63.55 13.97 21.65 0.30 -63.25 16 9 Si 0.94 47.18 27.74 68.60 1.90 49.09 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 12 H -0.26 -12.49 6.52 99.48 0.65 -11.84 16 13 C -0.11 -1.68 5.93 31.88 0.19 -1.49 16 14 C 0.08 1.22 4.65 86.73 0.40 1.62 16 15 N -0.60 -15.18 3.31 -816.31 -2.71 -17.88 16 16 C 0.59 17.66 7.83 86.49 0.68 18.34 16 17 O -0.56 -21.16 14.16 18.12 0.26 -20.90 16 18 C -0.26 -6.11 6.30 -19.49 -0.12 -6.24 16 19 C 0.05 0.78 10.58 86.01 0.91 1.69 16 20 N -0.37 -7.11 11.97 -56.72 -0.68 -7.79 16 21 O 0.12 2.45 11.19 67.84 0.76 3.21 16 22 C 0.12 2.74 7.41 24.91 0.18 2.92 16 23 C -0.02 -0.56 7.08 24.04 0.17 -0.39 16 24 C -0.13 -2.17 10.86 22.44 0.24 -1.92 16 25 C -0.22 -3.13 10.87 22.08 0.24 -2.89 16 26 C -0.01 -0.17 12.08 67.09 0.81 0.64 16 27 O -0.15 -4.09 7.67 16.31 0.13 -3.96 16 28 C 0.12 3.81 5.32 86.85 0.46 4.27 16 29 H 0.07 1.44 7.82 -2.39 -0.02 1.42 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 1.01 7.20 -2.39 -0.02 0.99 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 34 H 0.36 16.59 4.17 -92.70 -0.39 16.21 16 35 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 36 H 0.12 1.20 8.05 -2.39 -0.02 1.19 16 37 H 0.09 1.34 8.03 -2.39 -0.02 1.32 16 38 H 0.10 0.95 6.94 -2.39 -0.02 0.93 16 39 H 0.10 0.96 7.07 -2.39 -0.02 0.94 16 40 H 0.24 2.08 4.91 -2.91 -0.01 2.07 16 41 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 43 H 0.24 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 45 H 0.05 1.76 7.77 -2.39 -0.02 1.75 16 Total: -1.00 -81.28 369.81 5.39 -75.89 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.59 Total: 18.96 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.54 Total: 3.25 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -4.79 Total: -125.53 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 1.14 Total: -21.66 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.90 Total: 49.09 kcal Total: -81.28 5.39 -75.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699843542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.080 kcal (2) G-P(sol) polarization free energy of solvation -81.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds