Wall clock time and date at job start Wed Apr 1 2020 03:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 110.77484 * 2 1 4 4 N 1.46497 * 109.47410 * 298.21416 * 3 2 1 5 5 C 1.36930 * 119.99886 * 180.02562 * 4 3 2 6 6 H 1.08005 * 120.00426 * 0.02562 * 5 4 3 7 7 C 1.38820 * 119.99847 * 179.97438 * 5 4 3 8 8 N 1.31614 * 119.99621 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99733 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47122 * 90.00253 * 9 7 5 11 11 H 1.48504 * 109.47059 * 209.99831 * 9 7 5 12 12 H 1.48496 * 109.47310 * 329.99638 * 9 7 5 13 13 C 1.55153 * 110.72272 * 123.23671 * 2 1 3 14 14 C 1.54913 * 101.57937 * 82.86358 * 13 2 1 15 15 N 1.47423 * 104.82985 * 37.01010 * 14 13 2 16 16 C 1.34777 * 125.64572 * 155.85220 * 15 14 13 17 17 O 1.21593 * 120.00122 * 176.26807 * 16 15 14 18 18 C 1.47516 * 120.00119 * 356.26681 * 16 15 14 19 19 C 1.40100 * 119.93618 * 27.86527 * 18 16 15 20 20 C 1.36290 * 120.39052 * 179.97438 * 19 18 16 21 21 C 1.39860 * 120.04142 * 0.02562 * 20 19 18 22 22 N 1.35815 * 133.51553 * 180.02562 * 21 20 19 23 23 C 1.30784 * 108.79099 * 180.02562 * 22 21 20 24 24 O 1.35101 * 124.91878 * 180.02562 * 23 22 21 25 25 O 1.34320 * 110.16264 * 359.97438 * 23 22 21 26 26 C 1.35316 * 108.12378 * 0.02562 * 25 23 22 27 27 C 1.38104 * 133.76101 * 180.33070 * 26 25 23 28 28 C 1.47022 * 108.70247 * 335.87083 * 15 14 13 29 29 H 1.09000 * 109.47162 * 181.78720 * 1 2 3 30 30 H 1.09004 * 109.47408 * 301.78549 * 1 2 3 31 31 H 1.09001 * 109.47308 * 61.78552 * 1 2 3 32 32 H 1.08998 * 109.47095 * 58.22164 * 3 2 1 33 33 H 1.09000 * 109.46498 * 178.21311 * 3 2 1 34 34 H 0.97002 * 119.99808 * 0.02562 * 4 3 2 35 35 H 0.97005 * 119.99721 * 180.02562 * 8 7 5 36 36 H 1.09007 * 111.00486 * 324.79562 * 13 2 1 37 37 H 1.08996 * 111.00588 * 200.93878 * 13 2 1 38 38 H 1.09000 * 110.36277 * 278.16993 * 14 13 2 39 39 H 1.08997 * 110.36448 * 155.85183 * 14 13 2 40 40 H 1.07999 * 119.80111 * 359.97438 * 19 18 16 41 41 H 1.07995 * 119.98039 * 180.02562 * 20 19 18 42 42 H 0.96694 * 114.00473 * 90.02185 * 24 23 22 43 43 H 1.08004 * 120.18115 * 359.92710 * 27 26 25 44 44 H 1.08997 * 109.87853 * 120.48313 * 28 15 14 45 45 H 1.09006 * 109.87750 * 241.48483 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4306 0.0000 4 7 1.6354 2.1188 -1.2171 5 6 2.0028 3.4194 -1.4377 6 1 2.6153 3.9377 -0.7147 7 6 1.5889 4.0714 -2.5913 8 7 1.9425 5.3212 -2.8035 9 14 0.5301 3.1747 -3.8420 10 1 -0.9037 3.3758 -3.5118 11 1 0.8055 3.7114 -5.1991 12 1 0.8469 1.7243 -3.8097 13 6 2.0790 -0.7954 1.2138 14 6 2.0127 -2.2509 0.6875 15 7 2.3717 -2.1530 -0.7390 16 6 2.8861 -3.1473 -1.4895 17 8 3.0820 -2.9738 -2.6769 18 6 3.2114 -4.4461 -0.8704 19 6 2.5051 -4.8784 0.2597 20 6 2.7976 -6.0770 0.8388 21 6 3.8083 -6.8838 0.3062 22 7 4.3164 -8.0955 0.6502 23 6 5.2683 -8.4072 -0.1906 24 8 5.9943 -9.5459 -0.1494 25 8 5.4189 -7.4319 -1.1018 26 6 4.5223 -6.4566 -0.8265 27 6 4.2195 -5.2439 -1.4140 28 6 2.0760 -0.7910 -1.2072 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5413 0.8736 31 1 -0.3634 0.4858 -0.9056 32 1 1.6956 1.9623 0.8736 33 1 3.1620 1.4059 0.0320 34 1 1.0856 1.6532 -1.8666 35 1 1.6529 5.7770 -3.6094 36 1 1.4395 -0.6663 2.0871 37 1 3.1061 -0.5072 1.4375 38 1 1.0040 -2.6487 0.7985 39 1 2.7294 -2.8786 1.2169 40 1 1.7242 -4.2582 0.6743 41 1 2.2487 -6.4039 1.7095 42 1 5.6142 -10.2734 -0.6605 43 1 4.7619 -4.9133 -2.2875 44 1 2.9868 -0.3206 -1.5776 45 1 1.3283 -0.8257 -1.9996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699857307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:31 Heat of formation + Delta-G solvation = 4.080581 kcal Electronic energy + Delta-G solvation = -29658.896884 eV Core-core repulsion = 25451.705436 eV Total energy + Delta-G solvation = -4207.191449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -43.80583 -40.74106 -38.99931 -38.37708 -37.56099 -35.22605 -35.02798 -32.90243 -31.36102 -30.95667 -30.21845 -29.33455 -26.87802 -26.09889 -24.46163 -24.15987 -23.17949 -22.46073 -21.77527 -20.60240 -19.60961 -19.14716 -18.84429 -17.97779 -17.64872 -17.20291 -16.46496 -16.03400 -15.91430 -15.41658 -14.83017 -14.67867 -14.57571 -14.46838 -14.32271 -13.97208 -13.82339 -13.28516 -13.01446 -12.96516 -12.92240 -12.80068 -12.30860 -12.22318 -12.07404 -11.95626 -11.73820 -11.71267 -11.43793 -11.06512 -10.93445 -10.70541 -10.57645 -10.33814 -10.16714 -10.06249 -9.58082 -9.42024 -9.00977 -8.91295 -8.71334 -7.24781 -5.77323 -3.13115 -0.17644 0.63955 1.24722 1.62909 2.49666 2.68809 2.95801 3.24028 3.37866 3.41067 3.46528 3.87126 4.06106 4.26509 4.39760 4.45761 4.53124 4.59128 4.63364 4.75067 4.82658 5.06299 5.12518 5.14400 5.26901 5.35531 5.44551 5.49476 5.54236 5.60578 5.64624 5.68985 5.74064 5.84463 5.89384 5.90421 5.98008 6.11950 6.15254 6.28808 6.40607 6.42421 6.57204 6.64950 6.91748 7.32323 7.93936 7.97876 8.41359 9.19979 9.92371 10.11297 11.40975 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002214 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.001189 B =12644.228155 C =13243.737314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 C 0.173 3.827 4 N -0.754 5.754 5 C -0.244 4.244 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.880 3.120 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 C -0.123 4.123 14 C 0.088 3.912 15 N -0.606 5.606 16 C 0.572 3.428 17 O -0.528 6.528 18 C -0.096 4.096 19 C -0.098 4.098 20 C -0.064 4.064 21 C 0.050 3.950 22 N -0.466 5.466 23 C 0.425 3.575 24 O -0.407 6.407 25 O -0.220 6.220 26 C 0.011 3.989 27 C -0.027 4.027 28 C 0.118 3.882 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.423 0.577 43 H 0.150 0.850 44 H 0.081 0.919 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -29.719 10.253 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.083 4.083 3 C 0.046 3.954 4 N -0.400 5.400 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C -0.161 4.161 14 C -0.034 4.034 15 N -0.339 5.339 16 C 0.360 3.640 17 O -0.405 6.405 18 C -0.100 4.100 19 C -0.117 4.117 20 C -0.083 4.083 21 C -0.063 4.063 22 N -0.209 5.209 23 C 0.176 3.824 24 O -0.215 6.215 25 O -0.113 6.113 26 C -0.039 4.039 27 C -0.047 4.047 28 C -0.003 4.003 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.174 0.826 41 H 0.164 0.836 42 H 0.284 0.716 43 H 0.168 0.832 44 H 0.100 0.900 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.891 -29.568 10.380 31.394 hybrid contribution -0.545 -0.701 -1.918 2.114 sum 1.346 -30.269 8.461 31.458 Atomic orbital electron populations 1.21779 0.93300 1.00904 1.03101 1.21903 0.96437 0.96430 0.93552 1.20620 0.96671 0.87581 0.90534 1.42719 1.63379 1.12580 1.21364 1.19029 1.27130 0.86594 1.04664 0.89188 1.24662 1.00491 0.95888 0.97977 1.69697 1.49982 1.10413 1.27993 0.86609 0.80931 0.79407 0.82001 1.21038 1.21660 1.20200 1.22896 1.02745 0.92709 0.97747 1.22793 1.00316 0.98966 0.81357 1.48370 1.62178 1.12054 1.11343 1.17553 0.77952 0.82690 0.85819 1.90857 1.53381 1.81684 1.14561 1.19648 0.98024 0.95300 0.96983 1.21511 0.99950 0.96041 0.94208 1.19985 0.95441 0.92365 1.00531 1.19802 0.99092 0.92127 0.95268 1.71046 1.09270 1.14198 1.26398 1.22541 0.88925 0.86193 0.84731 1.84893 1.47643 1.16848 1.72114 1.84517 1.51163 1.26892 1.48741 1.19713 0.92494 0.92285 0.99406 1.19837 0.96843 0.88515 0.99523 1.22178 1.01686 0.79626 0.96857 0.93157 0.91819 0.91890 0.94794 0.95242 0.80559 0.93050 0.89292 0.89918 0.90622 0.89744 0.82609 0.83616 0.71622 0.83183 0.90044 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.26 37.16 0.31 -1.36 16 2 C -0.08 -1.09 0.61 -152.68 -0.09 -1.19 16 3 C 0.17 3.07 5.07 -4.04 -0.02 3.05 16 4 N -0.75 -17.16 4.96 -59.91 -0.30 -17.45 16 5 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 6 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 9 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 13 C -0.12 -1.15 6.02 -24.58 -0.15 -1.30 16 14 C 0.09 0.73 4.70 -2.53 -0.01 0.72 16 15 N -0.61 -7.51 3.33 -171.76 -0.57 -8.08 16 16 C 0.57 7.85 7.62 -12.48 -0.10 7.75 16 17 O -0.53 -9.40 16.98 5.28 0.09 -9.31 16 18 C -0.10 -1.02 5.70 -104.92 -0.60 -1.62 16 19 C -0.10 -0.76 7.84 -39.58 -0.31 -1.07 16 20 C -0.06 -0.50 10.03 -39.68 -0.40 -0.90 16 21 C 0.05 0.51 7.23 -84.62 -0.61 -0.11 16 22 N -0.47 -4.76 11.36 -12.72 -0.14 -4.91 16 23 C 0.43 3.74 9.54 52.32 0.50 4.24 16 24 O -0.41 -2.16 13.62 -40.31 -0.55 -2.71 16 25 O -0.22 -2.23 10.79 -20.51 -0.22 -2.45 16 26 C 0.01 0.11 7.40 -38.76 -0.29 -0.17 16 27 C -0.03 -0.30 9.60 -39.13 -0.38 -0.67 16 28 C 0.12 1.77 5.47 -3.07 -0.02 1.76 16 29 H 0.05 0.52 7.44 -51.93 -0.39 0.13 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.93 7.13 -51.93 -0.37 0.56 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 34 H 0.36 8.10 4.24 -40.82 -0.17 7.93 16 35 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 36 H 0.09 0.66 8.04 -51.92 -0.42 0.24 16 37 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 38 H 0.08 0.48 6.83 -51.93 -0.35 0.13 16 39 H 0.08 0.56 6.18 -51.93 -0.32 0.23 16 40 H 0.16 0.87 4.58 -52.49 -0.24 0.63 16 41 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.42 -0.36 9.06 45.56 0.41 0.05 16 43 H 0.15 1.61 7.88 -52.48 -0.41 1.20 16 44 H 0.08 1.43 7.82 -51.93 -0.41 1.02 16 45 H 0.07 1.16 7.85 -51.93 -0.41 0.75 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -36.89 368.45 -7.27 -44.16 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.78 Total: 4.01 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.41 Total: 2.24 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.24 Total: -58.93 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.68 Total: -14.47 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.89 -7.27 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699857307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.240 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds