Wall clock time and date at job start Wed Apr 1 2020 03:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 110.77484 * 2 1 4 4 N 1.46497 * 109.47410 * 298.21416 * 3 2 1 5 5 C 1.36930 * 119.99886 * 180.02562 * 4 3 2 6 6 H 1.08005 * 120.00426 * 0.02562 * 5 4 3 7 7 C 1.38820 * 119.99847 * 179.97438 * 5 4 3 8 8 N 1.31614 * 119.99621 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99733 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47122 * 90.00253 * 9 7 5 11 11 H 1.48504 * 109.47059 * 209.99831 * 9 7 5 12 12 H 1.48496 * 109.47310 * 329.99638 * 9 7 5 13 13 C 1.55153 * 110.72272 * 123.23671 * 2 1 3 14 14 C 1.54913 * 101.57937 * 82.86358 * 13 2 1 15 15 N 1.47423 * 104.82985 * 37.01010 * 14 13 2 16 16 C 1.34777 * 125.64572 * 155.85220 * 15 14 13 17 17 O 1.21593 * 120.00122 * 176.26807 * 16 15 14 18 18 C 1.47516 * 120.00119 * 356.26681 * 16 15 14 19 19 C 1.40100 * 119.93618 * 27.86527 * 18 16 15 20 20 C 1.36290 * 120.39052 * 179.97438 * 19 18 16 21 21 C 1.39860 * 120.04142 * 0.02562 * 20 19 18 22 22 N 1.35815 * 133.51553 * 180.02562 * 21 20 19 23 23 C 1.30784 * 108.79099 * 180.02562 * 22 21 20 24 24 O 1.35101 * 124.91878 * 180.02562 * 23 22 21 25 25 O 1.34320 * 110.16264 * 359.97438 * 23 22 21 26 26 C 1.35316 * 108.12378 * 0.02562 * 25 23 22 27 27 C 1.38104 * 133.76101 * 180.33070 * 26 25 23 28 28 C 1.47022 * 108.70247 * 335.87083 * 15 14 13 29 29 H 1.09000 * 109.47162 * 181.78720 * 1 2 3 30 30 H 1.09004 * 109.47408 * 301.78549 * 1 2 3 31 31 H 1.09001 * 109.47308 * 61.78552 * 1 2 3 32 32 H 1.08998 * 109.47095 * 58.22164 * 3 2 1 33 33 H 1.09000 * 109.46498 * 178.21311 * 3 2 1 34 34 H 0.97002 * 119.99808 * 0.02562 * 4 3 2 35 35 H 0.97005 * 119.99721 * 180.02562 * 8 7 5 36 36 H 1.09007 * 111.00486 * 324.79562 * 13 2 1 37 37 H 1.08996 * 111.00588 * 200.93878 * 13 2 1 38 38 H 1.09000 * 110.36277 * 278.16993 * 14 13 2 39 39 H 1.08997 * 110.36448 * 155.85183 * 14 13 2 40 40 H 1.07999 * 119.80111 * 359.97438 * 19 18 16 41 41 H 1.07995 * 119.98039 * 180.02562 * 20 19 18 42 42 H 0.96694 * 114.00473 * 90.02185 * 24 23 22 43 43 H 1.08004 * 120.18115 * 359.92710 * 27 26 25 44 44 H 1.08997 * 109.87853 * 120.48313 * 28 15 14 45 45 H 1.09006 * 109.87750 * 241.48483 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4306 0.0000 4 7 1.6354 2.1188 -1.2171 5 6 2.0028 3.4194 -1.4377 6 1 2.6153 3.9377 -0.7147 7 6 1.5889 4.0714 -2.5913 8 7 1.9425 5.3212 -2.8035 9 14 0.5301 3.1747 -3.8420 10 1 -0.9037 3.3758 -3.5118 11 1 0.8055 3.7114 -5.1991 12 1 0.8469 1.7243 -3.8097 13 6 2.0790 -0.7954 1.2138 14 6 2.0127 -2.2509 0.6875 15 7 2.3717 -2.1530 -0.7390 16 6 2.8861 -3.1473 -1.4895 17 8 3.0820 -2.9738 -2.6769 18 6 3.2114 -4.4461 -0.8704 19 6 2.5051 -4.8784 0.2597 20 6 2.7976 -6.0770 0.8388 21 6 3.8083 -6.8838 0.3062 22 7 4.3164 -8.0955 0.6502 23 6 5.2683 -8.4072 -0.1906 24 8 5.9943 -9.5459 -0.1494 25 8 5.4189 -7.4319 -1.1018 26 6 4.5223 -6.4566 -0.8265 27 6 4.2195 -5.2439 -1.4140 28 6 2.0760 -0.7910 -1.2072 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5413 0.8736 31 1 -0.3634 0.4858 -0.9056 32 1 1.6956 1.9623 0.8736 33 1 3.1620 1.4059 0.0320 34 1 1.0856 1.6532 -1.8666 35 1 1.6529 5.7770 -3.6094 36 1 1.4395 -0.6663 2.0871 37 1 3.1061 -0.5072 1.4375 38 1 1.0040 -2.6487 0.7985 39 1 2.7294 -2.8786 1.2169 40 1 1.7242 -4.2582 0.6743 41 1 2.2487 -6.4039 1.7095 42 1 5.6142 -10.2734 -0.6605 43 1 4.7619 -4.9133 -2.2875 44 1 2.9868 -0.3206 -1.5776 45 1 1.3283 -0.8257 -1.9996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699857307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:29 Heat of formation + Delta-G solvation = -27.310323 kcal Electronic energy + Delta-G solvation = -29660.258096 eV Core-core repulsion = 25451.705436 eV Total energy + Delta-G solvation = -4208.552660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.49453 -41.70678 -39.80976 -39.12722 -38.36757 -36.68353 -35.85123 -34.47011 -32.76903 -32.05735 -31.00794 -30.33525 -27.96356 -27.49659 -25.51479 -24.87644 -24.32215 -23.22199 -23.14415 -21.38178 -20.43548 -20.31184 -19.81295 -19.25448 -18.62333 -18.00190 -17.50465 -16.94356 -16.78661 -16.61078 -16.05172 -15.89502 -15.53453 -15.40234 -15.32281 -15.21174 -14.74963 -14.61357 -14.41415 -13.92717 -13.82630 -13.68677 -13.58028 -13.33287 -13.17836 -12.91914 -12.83035 -12.76149 -12.53347 -12.50189 -12.18848 -11.90165 -11.79225 -11.75428 -11.50354 -11.40270 -11.21972 -10.98728 -10.09540 -9.87903 -9.58002 -9.28462 -8.03713 -5.35452 -0.88624 -0.02487 0.61543 0.91713 1.34501 1.37847 1.43893 1.59727 1.80444 2.28200 2.45919 2.47546 3.18638 3.21358 3.28597 3.47573 3.55405 3.74665 3.75284 3.83970 3.87466 3.96194 4.11438 4.26329 4.32689 4.37276 4.55110 4.59951 4.67196 4.74231 4.79104 4.81621 4.92081 4.97230 5.00563 5.02724 5.07349 5.10812 5.22023 5.23749 5.30554 5.35801 5.51032 5.76132 6.13232 6.20660 6.25886 6.36857 6.91854 7.07900 7.85169 8.02086 9.17948 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.002214 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.001189 B =12644.228155 C =13243.737314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C 0.168 3.832 4 N -0.757 5.757 5 C -0.228 4.228 6 H 0.060 0.940 7 C -0.063 4.063 8 N -0.982 5.982 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.298 1.298 12 H -0.261 1.261 13 C -0.113 4.113 14 C 0.082 3.918 15 N -0.602 5.602 16 C 0.568 3.432 17 O -0.584 6.584 18 C -0.104 4.104 19 C -0.081 4.081 20 C -0.054 4.054 21 C 0.044 3.956 22 N -0.485 5.485 23 C 0.436 3.564 24 O -0.404 6.404 25 O -0.232 6.232 26 C -0.007 4.007 27 C -0.039 4.039 28 C 0.120 3.880 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.019 0.981 34 H 0.364 0.636 35 H 0.257 0.743 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.188 0.812 41 H 0.180 0.820 42 H 0.449 0.551 43 H 0.136 0.864 44 H 0.044 0.956 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 -33.175 13.041 35.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.075 4.075 3 C 0.042 3.958 4 N -0.403 5.403 5 C -0.359 4.359 6 H 0.078 0.922 7 C -0.255 4.255 8 N -0.633 5.633 9 Si 0.774 3.226 10 H -0.197 1.197 11 H -0.225 1.225 12 H -0.186 1.186 13 C -0.151 4.151 14 C -0.038 4.038 15 N -0.334 5.334 16 C 0.358 3.642 17 O -0.465 6.465 18 C -0.108 4.108 19 C -0.100 4.100 20 C -0.072 4.072 21 C -0.069 4.069 22 N -0.229 5.229 23 C 0.187 3.813 24 O -0.217 6.217 25 O -0.127 6.127 26 C -0.057 4.057 27 C -0.059 4.059 28 C -0.003 4.003 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.198 0.802 35 H 0.066 0.934 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.205 0.795 41 H 0.197 0.803 42 H 0.315 0.685 43 H 0.154 0.846 44 H 0.062 0.938 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.041 -33.103 13.234 35.650 hybrid contribution 0.178 0.291 -2.695 2.716 sum 0.218 -32.812 10.539 34.464 Atomic orbital electron populations 1.21775 0.91977 1.02804 1.02270 1.21781 0.97281 0.93442 0.94957 1.20835 0.96229 0.90297 0.88485 1.42762 1.63266 1.11034 1.23228 1.19049 1.25091 0.88356 1.03422 0.92194 1.25434 1.02823 0.96767 1.00429 1.69869 1.52311 1.12360 1.28804 0.85539 0.79569 0.78810 0.78689 1.19693 1.22519 1.18582 1.22941 1.03046 0.92248 0.96892 1.23223 1.03139 0.98872 0.78558 1.48408 1.61369 1.10521 1.13090 1.18058 0.77080 0.83772 0.85299 1.90821 1.55725 1.82855 1.17127 1.19422 0.99060 0.93895 0.98378 1.21738 0.99504 0.96210 0.92505 1.20364 0.94409 0.91515 1.00938 1.20210 0.99428 0.92278 0.94951 1.71072 1.10232 1.14513 1.27096 1.22782 0.88150 0.86530 0.83818 1.84868 1.47542 1.16625 1.72669 1.84511 1.51455 1.27304 1.49397 1.19724 0.93331 0.92414 1.00195 1.19764 0.97452 0.89139 0.99529 1.21949 0.99452 0.81456 0.97438 0.90034 0.90536 0.94694 0.94005 0.96261 0.80241 0.93422 0.85830 0.90335 0.86929 0.87060 0.79549 0.80291 0.68470 0.84617 0.93781 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.26 71.98 0.59 -2.25 16 2 C -0.07 -1.80 0.61 -51.00 -0.03 -1.83 16 3 C 0.17 5.84 5.07 86.38 0.44 6.28 16 4 N -0.76 -34.69 4.96 -343.44 -1.70 -36.39 16 5 C -0.23 -13.01 10.47 84.04 0.88 -12.13 16 6 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 7 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 8 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 9 Si 0.95 46.73 27.74 68.60 1.90 48.63 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 12 H -0.26 -12.03 6.52 99.48 0.65 -11.39 16 13 C -0.11 -1.64 6.02 31.99 0.19 -1.45 16 14 C 0.08 0.97 4.70 86.86 0.41 1.37 16 15 N -0.60 -13.84 3.33 -815.58 -2.71 -16.55 16 16 C 0.57 15.37 7.62 86.69 0.66 16.03 16 17 O -0.58 -21.79 16.98 -4.01 -0.07 -21.85 16 18 C -0.10 -2.07 5.70 -20.06 -0.11 -2.19 16 19 C -0.08 -0.93 7.84 22.27 0.17 -0.75 16 20 C -0.05 -0.61 10.03 22.21 0.22 -0.39 16 21 C 0.04 0.79 7.23 39.48 0.29 1.07 16 22 N -0.49 -8.88 11.36 -422.43 -4.80 -13.68 16 23 C 0.44 7.00 9.54 130.40 1.24 8.24 16 24 O -0.40 -3.46 13.62 -61.48 -0.84 -4.29 16 25 O -0.23 -4.62 10.79 9.34 0.10 -4.51 16 26 C -0.01 -0.15 7.40 22.80 0.17 0.02 16 27 C -0.04 -0.85 9.60 22.56 0.22 -0.63 16 28 C 0.12 3.56 5.47 86.73 0.47 4.04 16 29 H 0.08 1.27 7.44 -2.39 -0.02 1.25 16 30 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.03 0.95 7.13 -2.39 -0.02 0.94 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.02 0.72 8.13 -2.39 -0.02 0.70 16 34 H 0.36 16.29 4.24 -92.71 -0.39 15.89 16 35 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 36 H 0.12 1.05 8.04 -2.38 -0.02 1.03 16 37 H 0.08 1.25 8.04 -2.39 -0.02 1.23 16 38 H 0.11 0.61 6.83 -2.39 -0.02 0.60 16 39 H 0.11 0.82 6.18 -2.39 -0.01 0.80 16 40 H 0.19 0.92 4.58 -2.91 -0.01 0.91 16 41 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 42 H 0.45 -1.84 9.06 -74.06 -0.67 -2.51 16 43 H 0.14 3.20 7.88 -2.91 -0.02 3.18 16 44 H 0.04 1.61 7.82 -2.39 -0.02 1.60 16 45 H 0.05 1.73 7.85 -2.38 -0.02 1.71 16 Total: -1.00 -86.27 368.45 -1.59 -87.86 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.06 Total: 12.08 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.28 Total: 12.14 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -8.91 Total: -130.05 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.80 Total: -30.66 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.90 Total: 48.63 kcal Total: -86.27 -1.59 -87.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699857307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.547 kcal (2) G-P(sol) polarization free energy of solvation -86.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds