Wall clock time and date at job start Wed Apr 1 2020 03:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29872 * 124.83418 * 2 1 4 4 C 1.36129 * 108.76573 * 179.97438 * 3 2 1 5 5 C 1.39271 * 133.76494 * 180.02562 * 4 3 2 6 6 C 1.39191 * 119.46580 * 179.97438 * 5 4 3 7 7 C 1.47718 * 119.94989 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00207 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00074 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99975 * 174.49731 * 9 7 6 11 11 C 1.52995 * 112.94346 * 294.42870 * 10 9 7 12 12 C 1.52997 * 109.47512 * 304.22623 * 11 10 9 13 13 O 1.42896 * 109.47307 * 175.38620 * 12 11 10 14 14 C 1.53949 * 113.74132 * 162.83923 * 10 9 7 15 15 N 1.47813 * 86.03703 * 222.08021 * 14 10 9 16 16 C 1.36934 * 134.45683 * 204.63942 * 15 14 10 17 17 H 1.07998 * 119.99682 * 184.42939 * 16 15 14 18 18 C 1.38808 * 119.99905 * 4.43354 * 16 15 14 19 19 N 1.31616 * 120.00367 * 5.62192 * 18 16 15 20 20 Si 1.86809 * 120.00098 * 185.62330 * 18 16 15 21 21 H 1.48493 * 109.46888 * 94.98523 * 20 18 16 22 22 H 1.48491 * 109.46987 * 214.98793 * 20 18 16 23 23 H 1.48499 * 109.46980 * 334.98784 * 20 18 16 24 24 C 1.47579 * 91.04753 * 24.55264 * 15 14 10 25 25 C 1.40047 * 120.09718 * 359.78919 * 6 5 4 26 26 C 1.36524 * 120.47467 * 0.44340 * 25 6 5 27 27 C 1.38898 * 120.18705 * 359.54203 * 26 25 6 28 28 O 1.34254 * 124.83410 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47038 * 89.99932 * 1 2 3 30 30 H 1.09002 * 109.46889 * 210.00174 * 1 2 3 31 31 H 1.09003 * 109.46831 * 329.99637 * 1 2 3 32 32 H 1.07995 * 120.26377 * 359.94976 * 5 4 3 33 33 H 0.96994 * 120.00008 * 354.48828 * 9 7 6 34 34 H 1.09007 * 109.46887 * 64.22265 * 11 10 9 35 35 H 1.08998 * 109.47514 * 184.22159 * 11 10 9 36 36 H 1.09004 * 109.47257 * 295.38411 * 12 11 10 37 37 H 1.08996 * 109.47147 * 55.38074 * 12 11 10 38 38 H 0.96707 * 113.99951 * 179.97438 * 13 12 11 39 39 H 1.09000 * 113.77131 * 336.34633 * 14 10 9 40 40 H 1.09002 * 113.76643 * 107.74373 * 14 10 9 41 41 H 0.97003 * 120.00207 * 179.97438 * 19 18 16 42 42 H 1.09010 * 113.76463 * 221.14979 * 24 15 14 43 43 H 1.09002 * 113.77169 * 89.75492 * 24 15 14 44 44 H 1.08003 * 119.76090 * 180.23652 * 25 6 5 45 45 H 1.07997 * 119.90508 * 179.80609 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6892 0.0006 5 6 4.7610 1.3891 0.0013 6 6 5.9619 0.6854 0.0023 7 6 7.2453 1.4169 0.0025 8 8 7.2521 2.6326 0.0022 9 7 8.4087 0.7366 0.0040 10 6 9.6786 1.4569 -0.1175 11 6 9.8452 2.1477 -1.4724 12 6 9.6899 1.1175 -2.5928 13 8 9.7383 1.7791 -3.8584 14 6 10.9040 0.6294 0.3112 15 7 11.3763 1.8628 0.9751 16 6 12.6047 2.3454 1.3400 17 1 12.6791 3.2711 1.8912 18 6 13.7541 1.6448 1.0014 19 7 13.6727 0.5771 0.2360 20 14 15.4168 2.2172 1.6320 21 1 15.7571 1.4766 2.8733 22 1 16.4533 1.9579 0.6008 23 1 15.3614 3.6723 1.9233 24 6 9.9931 2.3658 1.0846 25 6 5.9553 -0.7150 0.0070 26 6 4.7755 -1.4019 0.0016 27 6 3.5678 -0.7157 0.0009 28 8 2.2738 -1.1020 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 4.7628 2.4690 0.0007 33 1 8.4053 -0.2299 0.0856 34 1 9.0847 2.9209 -1.5819 35 1 10.8349 2.6008 -1.5300 36 1 10.4992 0.3898 -2.5320 37 1 8.7331 0.6063 -2.4863 38 1 9.6463 1.1855 -4.6163 39 1 10.6680 -0.1791 1.0030 40 1 11.5310 0.3095 -0.5211 41 1 14.4761 0.0877 -0.0009 42 1 9.8942 3.4297 0.8686 43 1 9.4890 2.0684 2.0041 44 1 6.8904 -1.2556 0.0117 45 1 4.7811 -2.4818 0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700492502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:08 Heat of formation + Delta-G solvation = 16.079382 kcal Electronic energy + Delta-G solvation = -29865.226623 eV Core-core repulsion = 25658.555481 eV Total energy + Delta-G solvation = -4206.671142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.60091 -40.28333 -38.58675 -37.23030 -36.36420 -35.23909 -33.79130 -32.31911 -31.69808 -31.07413 -30.30343 -28.46078 -27.06093 -25.07647 -24.65915 -23.25519 -22.68998 -21.94338 -21.73911 -20.75731 -18.73055 -18.43330 -17.85290 -17.21995 -17.17827 -16.81124 -16.37503 -15.58258 -15.32025 -14.85010 -14.68169 -14.49059 -14.40471 -14.11337 -13.86439 -13.79591 -13.68800 -13.60297 -13.33921 -13.04406 -12.65788 -12.48119 -11.92814 -11.89428 -11.69919 -11.65353 -11.55748 -11.10909 -10.90692 -10.81199 -10.77245 -10.71628 -10.19334 -9.96878 -9.72413 -9.64346 -9.29066 -9.12097 -8.91041 -8.83860 -8.64264 -6.93314 -5.81533 -3.14645 0.37356 0.52474 2.02024 2.08383 2.79865 3.14647 3.38450 3.43889 3.45714 3.53351 3.64313 4.13642 4.42016 4.47844 4.51125 4.63586 4.67246 4.70373 4.85021 4.95765 5.02942 5.13426 5.18758 5.22696 5.46274 5.49206 5.54185 5.69464 5.72947 5.78680 5.84640 5.89831 5.92523 5.94393 6.18317 6.31034 6.44379 6.49371 6.64352 6.74266 6.82510 7.10001 7.24381 7.29030 7.47075 7.73780 7.90832 7.93541 8.42019 8.99494 9.66117 10.51932 11.34731 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.002330 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.892169 B =12016.287412 C =12409.013212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.244 3.756 3 N -0.473 5.473 4 C 0.013 3.987 5 C 0.003 3.997 6 C -0.128 4.128 7 C 0.558 3.442 8 O -0.525 6.525 9 N -0.709 5.709 10 C 0.125 3.875 11 C -0.095 4.095 12 C 0.082 3.918 13 O -0.574 6.574 14 C 0.158 3.842 15 N -0.605 5.605 16 C -0.218 4.218 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.129 3.871 25 C -0.063 4.063 26 C -0.096 4.096 27 C 0.025 3.975 28 O -0.214 6.214 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.395 0.605 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.372 0.628 39 H 0.028 0.972 40 H 0.090 0.910 41 H 0.254 0.746 42 H 0.053 0.947 43 H 0.037 0.963 44 H 0.146 0.854 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.950 -8.306 -3.629 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 N -0.203 5.203 4 C -0.098 4.098 5 C -0.017 4.017 6 C -0.133 4.133 7 C 0.344 3.656 8 O -0.402 6.402 9 N -0.361 5.361 10 C 0.039 3.961 11 C -0.133 4.133 12 C 0.004 3.996 13 O -0.379 6.379 14 C 0.032 3.968 15 N -0.331 5.331 16 C -0.346 4.346 17 H 0.100 0.900 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.744 3.256 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.002 3.998 25 C -0.082 4.082 26 C -0.115 4.115 27 C -0.026 4.026 28 O -0.105 6.105 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.169 0.831 33 H 0.231 0.769 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.217 0.783 39 H 0.046 0.954 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.164 0.836 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.682 -6.261 -3.231 24.708 hybrid contribution 1.007 -1.648 0.194 1.941 sum -22.675 -7.909 -3.038 24.206 Atomic orbital electron populations 1.20431 0.80703 1.05683 1.05271 1.26519 0.96694 0.78154 0.95431 1.70661 1.00798 1.28886 1.19919 1.19729 0.92087 0.91202 1.06752 1.20435 0.87256 1.01258 0.92706 1.19968 0.93900 0.93525 1.05880 1.17973 0.83265 0.87320 0.77026 1.90795 1.87287 1.13091 1.48996 1.46132 1.05783 1.10423 1.73728 1.23013 0.81561 0.96036 0.95470 1.21327 1.04318 0.97677 0.90011 1.22136 0.98979 0.95179 0.83294 1.86500 1.96849 1.38791 1.15746 1.22710 0.88140 0.89563 0.96368 1.45664 0.99993 1.17581 1.69879 1.19005 0.80879 1.05264 1.29407 0.90010 1.24764 0.97668 0.97923 1.00013 1.69778 1.27651 1.20032 1.39295 0.86072 0.83547 0.78070 0.77943 1.21691 1.21669 1.20481 1.22810 0.85824 0.97429 0.93719 1.20926 0.97798 0.92973 0.96493 1.19510 0.86972 1.00594 1.04449 1.20511 0.83865 0.94501 1.03746 1.84475 1.15320 1.36348 1.74399 0.88256 0.88814 0.87548 0.83096 0.76934 0.90897 0.88926 0.93142 0.94626 0.78276 0.95388 0.89157 0.93626 0.92876 0.94496 0.83607 0.84060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.24 2.30 8.23 -13.11 -0.11 2.19 16 3 N -0.47 -5.90 11.34 -8.72 -0.10 -5.99 16 4 C 0.01 0.17 7.23 -84.73 -0.61 -0.44 16 5 C 0.00 0.04 9.64 -38.84 -0.37 -0.33 16 6 C -0.13 -1.61 5.87 -104.99 -0.62 -2.23 16 7 C 0.56 8.59 7.43 -12.39 -0.09 8.50 16 8 O -0.52 -9.98 14.75 5.30 0.08 -9.90 16 9 N -0.71 -10.36 4.41 -50.05 -0.22 -10.58 16 10 C 0.13 2.33 0.67 -134.03 -0.09 2.24 16 11 C -0.09 -1.82 4.83 -26.74 -0.13 -1.95 16 12 C 0.08 1.32 6.86 37.16 0.25 1.57 16 13 O -0.57 -9.17 13.66 -35.23 -0.48 -9.66 16 14 C 0.16 3.45 6.92 -2.84 -0.02 3.43 16 15 N -0.60 -15.22 3.54 -177.49 -0.63 -15.85 16 16 C -0.22 -6.04 10.69 -15.06 -0.16 -6.20 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -26.22 11.30 55.49 0.63 -25.59 16 20 Si 0.91 21.94 29.56 -169.99 -5.02 16.92 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.13 2.79 7.49 -2.97 -0.02 2.76 16 25 C -0.06 -0.60 9.47 -39.52 -0.37 -0.97 16 26 C -0.10 -0.88 9.99 -39.96 -0.40 -1.28 16 27 C 0.02 0.28 7.43 -38.49 -0.29 -0.01 16 28 O -0.21 -2.23 10.77 3.76 0.04 -2.19 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.15 2.09 7.64 -52.49 -0.40 1.69 16 33 H 0.40 4.51 6.73 -40.82 -0.27 4.23 16 34 H 0.07 1.47 7.16 -51.93 -0.37 1.10 16 35 H 0.09 2.07 8.02 -51.93 -0.42 1.65 16 36 H 0.05 0.82 7.61 -51.93 -0.40 0.42 16 37 H 0.04 0.51 7.53 -51.93 -0.39 0.11 16 38 H 0.37 3.92 9.12 45.56 0.42 4.34 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.16 6.31 -51.93 -0.33 1.84 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.05 1.19 8.10 -51.92 -0.42 0.77 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.15 0.98 6.38 -52.48 -0.33 0.65 16 45 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -35.81 378.90 -7.75 -43.55 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.00 Total: 6.45 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.75 Total: 7.12 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.32 Total: -58.01 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.36 Total: -21.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.81 -7.75 -43.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700492502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.633 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds