Wall clock time and date at job start Wed Apr 1 2020 03:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29872 * 124.83418 * 2 1 4 4 C 1.36129 * 108.76573 * 179.97438 * 3 2 1 5 5 C 1.39271 * 133.76494 * 180.02562 * 4 3 2 6 6 C 1.39191 * 119.46580 * 179.97438 * 5 4 3 7 7 C 1.47718 * 119.94989 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00207 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00074 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99975 * 174.49731 * 9 7 6 11 11 C 1.52995 * 112.94346 * 294.42870 * 10 9 7 12 12 C 1.52997 * 109.47512 * 304.22623 * 11 10 9 13 13 O 1.42896 * 109.47307 * 175.38620 * 12 11 10 14 14 C 1.53949 * 113.74132 * 162.83923 * 10 9 7 15 15 N 1.47813 * 86.03703 * 222.08021 * 14 10 9 16 16 C 1.36934 * 134.45683 * 204.63942 * 15 14 10 17 17 H 1.07998 * 119.99682 * 184.42939 * 16 15 14 18 18 C 1.38808 * 119.99905 * 4.43354 * 16 15 14 19 19 N 1.31616 * 120.00367 * 5.62192 * 18 16 15 20 20 Si 1.86809 * 120.00098 * 185.62330 * 18 16 15 21 21 H 1.48493 * 109.46888 * 94.98523 * 20 18 16 22 22 H 1.48491 * 109.46987 * 214.98793 * 20 18 16 23 23 H 1.48499 * 109.46980 * 334.98784 * 20 18 16 24 24 C 1.47579 * 91.04753 * 24.55264 * 15 14 10 25 25 C 1.40047 * 120.09718 * 359.78919 * 6 5 4 26 26 C 1.36524 * 120.47467 * 0.44340 * 25 6 5 27 27 C 1.38898 * 120.18705 * 359.54203 * 26 25 6 28 28 O 1.34254 * 124.83410 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47038 * 89.99932 * 1 2 3 30 30 H 1.09002 * 109.46889 * 210.00174 * 1 2 3 31 31 H 1.09003 * 109.46831 * 329.99637 * 1 2 3 32 32 H 1.07995 * 120.26377 * 359.94976 * 5 4 3 33 33 H 0.96994 * 120.00008 * 354.48828 * 9 7 6 34 34 H 1.09007 * 109.46887 * 64.22265 * 11 10 9 35 35 H 1.08998 * 109.47514 * 184.22159 * 11 10 9 36 36 H 1.09004 * 109.47257 * 295.38411 * 12 11 10 37 37 H 1.08996 * 109.47147 * 55.38074 * 12 11 10 38 38 H 0.96707 * 113.99951 * 179.97438 * 13 12 11 39 39 H 1.09000 * 113.77131 * 336.34633 * 14 10 9 40 40 H 1.09002 * 113.76643 * 107.74373 * 14 10 9 41 41 H 0.97003 * 120.00207 * 179.97438 * 19 18 16 42 42 H 1.09010 * 113.76463 * 221.14979 * 24 15 14 43 43 H 1.09002 * 113.77169 * 89.75492 * 24 15 14 44 44 H 1.08003 * 119.76090 * 180.23652 * 25 6 5 45 45 H 1.07997 * 119.90508 * 179.80609 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6892 0.0006 5 6 4.7610 1.3891 0.0013 6 6 5.9619 0.6854 0.0023 7 6 7.2453 1.4169 0.0025 8 8 7.2521 2.6326 0.0022 9 7 8.4087 0.7366 0.0040 10 6 9.6786 1.4569 -0.1175 11 6 9.8452 2.1477 -1.4724 12 6 9.6899 1.1175 -2.5928 13 8 9.7383 1.7791 -3.8584 14 6 10.9040 0.6294 0.3112 15 7 11.3763 1.8628 0.9751 16 6 12.6047 2.3454 1.3400 17 1 12.6791 3.2711 1.8912 18 6 13.7541 1.6448 1.0014 19 7 13.6727 0.5771 0.2360 20 14 15.4168 2.2172 1.6320 21 1 15.7571 1.4766 2.8733 22 1 16.4533 1.9579 0.6008 23 1 15.3614 3.6723 1.9233 24 6 9.9931 2.3658 1.0846 25 6 5.9553 -0.7150 0.0070 26 6 4.7755 -1.4019 0.0016 27 6 3.5678 -0.7157 0.0009 28 8 2.2738 -1.1020 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 4.7628 2.4690 0.0007 33 1 8.4053 -0.2299 0.0856 34 1 9.0847 2.9209 -1.5819 35 1 10.8349 2.6008 -1.5300 36 1 10.4992 0.3898 -2.5320 37 1 8.7331 0.6063 -2.4863 38 1 9.6463 1.1855 -4.6163 39 1 10.6680 -0.1791 1.0030 40 1 11.5310 0.3095 -0.5211 41 1 14.4761 0.0877 -0.0009 42 1 9.8942 3.4297 0.8686 43 1 9.4890 2.0684 2.0041 44 1 6.8904 -1.2556 0.0117 45 1 4.7811 -2.4818 0.0022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700492502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:07 Heat of formation + Delta-G solvation = -13.361908 kcal Electronic energy + Delta-G solvation = -29866.503293 eV Core-core repulsion = 25658.555481 eV Total energy + Delta-G solvation = -4207.947812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.38949 -41.66407 -39.89694 -38.39762 -37.69378 -36.04494 -35.35344 -33.91723 -32.66436 -32.04481 -31.68727 -29.34910 -28.79320 -26.84659 -25.82569 -24.71151 -23.51116 -23.28016 -22.69402 -22.09748 -20.22817 -19.51861 -18.77108 -18.70948 -18.42208 -17.99774 -17.46963 -16.91192 -16.75500 -16.51435 -16.05665 -15.79984 -15.49578 -15.29986 -15.04969 -14.98963 -14.77949 -14.40446 -14.12175 -14.08075 -13.73737 -13.48157 -13.42335 -13.30208 -13.24396 -12.91003 -12.79402 -12.69704 -12.54080 -12.35326 -12.25622 -12.04523 -11.74308 -11.63232 -11.43580 -11.05711 -10.90832 -10.75484 -10.20693 -9.91838 -9.64073 -8.93924 -7.91472 -5.25748 -0.44150 -0.37714 1.26346 1.37213 1.47108 1.47832 1.56902 1.72706 1.94165 2.48095 2.63252 2.78950 3.14621 3.26047 3.31277 3.36491 3.61189 3.62745 3.85199 3.91481 4.00150 4.13743 4.17907 4.28190 4.35444 4.48560 4.58994 4.63068 4.63782 4.70780 4.73043 4.82409 4.85712 4.91492 4.97796 5.04424 5.07661 5.14435 5.16445 5.23262 5.25140 5.38580 5.49546 5.68141 5.92307 6.46512 6.54808 6.91228 6.92632 7.20262 7.57414 8.50428 9.23698 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.002330 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.892169 B =12016.287412 C =12409.013212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.256 3.744 3 N -0.517 5.517 4 C -0.009 4.009 5 C -0.017 4.017 6 C -0.132 4.132 7 C 0.562 3.438 8 O -0.567 6.567 9 N -0.694 5.694 10 C 0.157 3.843 11 C -0.090 4.090 12 C 0.091 3.909 13 O -0.594 6.594 14 C 0.165 3.835 15 N -0.632 5.632 16 C -0.236 4.236 17 H 0.076 0.924 18 C -0.056 4.056 19 N -0.942 5.942 20 Si 0.976 3.024 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.274 1.274 24 C 0.125 3.875 25 C -0.055 4.055 26 C -0.081 4.081 27 C 0.016 3.984 28 O -0.213 6.213 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.416 0.584 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.041 0.959 40 H 0.070 0.930 41 H 0.252 0.748 42 H 0.037 0.963 43 H 0.044 0.956 44 H 0.180 0.820 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.643 -11.109 -3.823 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.045 3.955 3 N -0.247 5.247 4 C -0.119 4.119 5 C -0.037 4.037 6 C -0.136 4.136 7 C 0.350 3.650 8 O -0.446 6.446 9 N -0.348 5.348 10 C 0.070 3.930 11 C -0.129 4.129 12 C 0.014 3.986 13 O -0.402 6.402 14 C 0.039 3.961 15 N -0.359 5.359 16 C -0.365 4.365 17 H 0.094 0.906 18 C -0.250 4.250 19 N -0.590 5.590 20 Si 0.804 3.196 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.199 1.199 24 C -0.001 4.001 25 C -0.073 4.073 26 C -0.099 4.099 27 C -0.035 4.035 28 O -0.106 6.106 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.255 0.745 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.246 0.754 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.198 0.802 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -25.415 -9.104 -3.437 27.214 hybrid contribution 1.362 -0.754 0.241 1.575 sum -24.053 -9.857 -3.196 26.190 Atomic orbital electron populations 1.20797 0.76941 1.07292 1.07022 1.27634 0.98310 0.77227 0.92362 1.70664 1.01049 1.30531 1.22445 1.19858 0.92199 0.92360 1.07489 1.20316 0.88273 1.00531 0.94611 1.19681 0.91666 0.94822 1.07456 1.18349 0.84077 0.86879 0.75716 1.90786 1.87882 1.15195 1.50772 1.45783 1.04127 1.11280 1.73593 1.22252 0.82470 0.94337 0.93967 1.21185 1.01442 0.98335 0.91892 1.21976 1.00377 0.93757 0.82515 1.86440 1.96948 1.40264 1.16555 1.22620 0.88744 0.89101 0.95586 1.45938 1.00400 1.19257 1.70309 1.19263 0.82445 1.05413 1.29341 0.90601 1.25509 1.00675 0.98361 1.00479 1.69919 1.28161 1.20809 1.40095 0.85100 0.79399 0.77854 0.77201 1.21267 1.21752 1.19885 1.22887 0.84667 0.97186 0.95399 1.21224 0.99541 0.91298 0.95265 1.19944 0.85622 1.02333 1.01993 1.20881 0.84942 0.93944 1.03724 1.84504 1.15005 1.36624 1.74419 0.86176 0.86293 0.86745 0.85205 0.74475 0.92276 0.92840 0.93059 0.91887 0.75378 0.94137 0.91201 0.93928 0.94511 0.93829 0.80238 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 71.23 0.75 0.42 16 2 C 0.26 4.40 8.23 88.40 0.73 5.13 16 3 N -0.52 -12.80 11.34 -296.33 -3.36 -16.16 16 4 C -0.01 -0.22 7.23 39.27 0.28 0.06 16 5 C -0.02 -0.47 9.64 22.75 0.22 -0.25 16 6 C -0.13 -3.18 5.87 -20.10 -0.12 -3.30 16 7 C 0.56 17.06 7.43 86.75 0.64 17.71 16 8 O -0.57 -22.26 14.75 -3.95 -0.06 -22.32 16 9 N -0.69 -19.35 4.41 -430.52 -1.90 -21.25 16 10 C 0.16 5.87 0.67 5.36 0.00 5.88 16 11 C -0.09 -3.52 4.83 30.59 0.15 -3.38 16 12 C 0.09 2.85 6.86 71.98 0.49 3.35 16 13 O -0.59 -18.36 13.66 -148.98 -2.03 -20.39 16 14 C 0.16 7.20 6.92 86.44 0.60 7.80 16 15 N -0.63 -32.56 3.54 -715.45 -2.53 -35.10 16 16 C -0.24 -13.40 10.69 84.03 0.90 -12.50 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 19 N -0.94 -54.16 11.30 21.65 0.24 -53.92 16 20 Si 0.98 45.54 29.56 68.60 2.03 47.56 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 24 C 0.12 5.55 7.49 86.48 0.65 6.20 16 25 C -0.05 -0.86 9.47 22.31 0.21 -0.65 16 26 C -0.08 -1.17 9.99 22.03 0.22 -0.95 16 27 C 0.02 0.33 7.43 22.98 0.17 0.51 16 28 O -0.21 -3.96 10.77 -9.45 -0.10 -4.06 16 29 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.13 3.96 7.64 -2.91 -0.02 3.93 16 33 H 0.42 8.21 6.73 -92.71 -0.62 7.59 16 34 H 0.06 2.48 7.16 -2.38 -0.02 2.46 16 35 H 0.05 2.51 8.02 -2.39 -0.02 2.49 16 36 H 0.05 1.61 7.61 -2.39 -0.02 1.59 16 37 H 0.06 1.63 7.53 -2.39 -0.02 1.61 16 38 H 0.40 7.60 9.12 -74.05 -0.68 6.92 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 3.38 6.31 -2.39 -0.02 3.36 16 41 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.04 1.73 8.10 -2.38 -0.02 1.71 16 43 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.18 1.52 6.38 -2.91 -0.02 1.50 16 45 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -81.55 378.90 -1.59 -83.14 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.24 Total: 19.16 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: 6.36 Total: 23.33 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -7.55 Total: -126.42 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -2.19 Total: -46.77 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -81.55 -1.59 -83.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700492502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.779 kcal (2) G-P(sol) polarization free energy of solvation -81.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds