Wall clock time and date at job start Wed Apr 1 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 110.88557 * 2 1 4 4 N 1.46502 * 109.46735 * 303.87852 * 3 2 1 5 5 C 1.36935 * 120.00093 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00168 * 180.02562 * 5 4 3 8 8 N 1.31623 * 119.99778 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46851 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46993 * 119.99490 * 9 7 5 12 12 H 1.48500 * 109.46852 * 239.99568 * 9 7 5 13 13 C 1.55165 * 111.00576 * 123.87498 * 2 1 3 14 14 C 1.54316 * 102.93730 * 82.61217 * 13 2 1 15 15 N 1.47017 * 107.27711 * 22.19492 * 14 13 2 16 16 C 1.34777 * 125.65341 * 181.01733 * 15 14 13 17 17 O 1.21493 * 120.00329 * 180.02562 * 16 15 14 18 18 C 1.48351 * 119.99570 * 359.75181 * 16 15 14 19 19 C 1.41722 * 126.80767 * 180.27252 * 18 16 15 20 20 C 1.37159 * 103.78971 * 180.02562 * 19 18 16 21 21 C 1.47007 * 126.85511 * 180.02562 * 20 19 18 22 22 C 1.36336 * 125.96750 * 179.97438 * 21 20 19 23 23 C 1.40698 * 106.72419 * 179.97438 * 22 21 20 24 24 C 1.34899 * 107.07929 * 0.02562 * 23 22 21 25 25 O 1.34227 * 108.72986 * 359.76874 * 24 23 22 26 26 O 1.34585 * 106.28404 * 0.02562 * 20 19 18 27 27 N 1.20871 * 111.68909 * 359.70589 * 26 20 19 28 28 C 1.47426 * 108.70292 * 1.28432 * 15 14 13 29 29 H 1.09000 * 109.47361 * 296.12339 * 1 2 3 30 30 H 1.08993 * 109.47069 * 56.12677 * 1 2 3 31 31 H 1.09003 * 109.46699 * 176.12202 * 1 2 3 32 32 H 1.08998 * 109.46844 * 63.87303 * 3 2 1 33 33 H 1.08999 * 109.46892 * 183.88316 * 3 2 1 34 34 H 0.97000 * 119.99864 * 359.97438 * 4 3 2 35 35 H 0.97003 * 119.99778 * 180.02562 * 8 7 5 36 36 H 1.09003 * 110.71808 * 324.25146 * 13 2 1 37 37 H 1.09000 * 110.87074 * 201.04926 * 13 2 1 38 38 H 1.09004 * 109.88524 * 262.77082 * 14 13 2 39 39 H 1.09008 * 109.88109 * 141.61179 * 14 13 2 40 40 H 1.07996 * 128.10155 * 0.03667 * 19 18 16 41 41 H 1.08004 * 126.64172 * 359.95110 * 22 21 20 42 42 H 1.07994 * 126.46439 * 180.02562 * 23 22 21 43 43 H 1.07998 * 125.63448 * 179.97438 * 24 23 22 44 44 H 1.08999 * 110.36638 * 94.48082 * 28 15 14 45 45 H 1.08994 * 110.37009 * 216.80449 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4296 0.0000 4 7 1.5302 2.1602 -1.1468 5 6 1.8802 3.4676 -1.3549 6 1 2.5579 3.9602 -0.6734 7 6 1.3631 4.1601 -2.4411 8 7 0.5367 3.5598 -3.2714 9 14 1.8400 5.9438 -2.7246 10 1 2.7745 6.3820 -1.6569 11 1 2.5023 6.0749 -4.0472 12 1 0.6218 6.7926 -2.6948 13 6 2.0862 -0.8074 1.2027 14 6 2.0295 -2.2641 0.6967 15 7 2.0154 -2.2157 -0.7726 16 6 1.9496 -3.2829 -1.5932 17 8 1.9448 -3.1238 -2.7977 18 6 1.8891 -4.6522 -1.0257 19 6 1.8226 -5.8691 -1.7492 20 6 1.7855 -6.8296 -0.7707 21 6 1.7132 -8.2848 -0.9660 22 6 1.6778 -9.2244 0.0212 23 6 1.6102 -10.4776 -0.6148 24 6 1.6081 -10.2477 -1.9440 25 8 1.6656 -8.9229 -2.1524 26 8 1.8287 -6.1737 0.4037 27 7 1.8908 -4.9771 0.2451 28 6 2.0917 -0.8069 -1.2000 29 1 -0.3634 0.4525 0.9227 30 1 -0.3633 0.5727 -0.8532 31 1 -0.3633 -1.0254 -0.0695 32 1 1.7822 1.9303 0.9227 33 1 3.1630 1.4034 -0.0696 34 1 0.9218 1.7176 -1.7590 35 1 0.1757 4.0436 -4.0307 36 1 1.4520 -0.6788 2.0798 37 1 3.1128 -0.5158 1.4246 38 1 1.1230 -2.7479 1.0604 39 1 2.9076 -2.8106 1.0411 40 1 1.8053 -6.0075 -2.8201 41 1 1.6982 -9.0421 1.0856 42 1 1.5679 -11.4418 -0.1302 43 1 1.5637 -11.0043 -2.7134 44 1 3.1261 -0.5260 -1.3981 45 1 1.4776 -0.6453 -2.0859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724239362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:57 Heat of formation + Delta-G solvation = 70.980704 kcal Electronic energy + Delta-G solvation = -29301.768393 eV Core-core repulsion = 25097.477952 eV Total energy + Delta-G solvation = -4204.290442 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.41703 -43.07214 -40.19243 -38.07474 -34.92922 -34.39202 -33.86479 -33.17797 -32.51435 -30.50092 -29.29681 -29.11401 -27.10713 -25.95017 -24.46857 -23.82928 -23.34678 -22.19108 -21.96913 -21.70652 -19.77383 -18.93456 -18.46553 -18.25580 -17.33739 -17.10205 -16.64797 -16.53551 -16.05324 -15.55805 -15.18463 -14.63642 -14.43675 -14.27674 -13.97648 -13.64787 -13.48115 -13.30412 -13.26338 -12.96558 -12.94188 -12.71659 -12.39293 -12.04169 -11.94980 -11.69361 -11.61909 -11.01112 -11.00205 -10.85430 -10.81167 -10.55411 -10.44214 -10.42079 -10.33500 -10.25017 -9.93592 -9.62196 -8.87405 -8.68651 -8.63512 -6.91089 -5.74891 -3.03856 0.18980 1.02063 1.55335 1.66431 2.23978 2.67424 3.02343 3.19253 3.44877 3.50206 3.52718 3.58177 3.87013 4.36661 4.41369 4.45292 4.55888 4.61572 4.69669 4.80601 4.88784 5.00190 5.22564 5.28802 5.33532 5.38530 5.41081 5.47262 5.59170 5.62364 5.70937 5.84793 5.87442 6.01630 6.05416 6.09093 6.14653 6.22648 6.35427 6.42031 6.45943 6.64940 6.74042 6.82989 7.37606 7.54362 7.71933 7.97278 8.43572 9.55038 10.11845 10.46308 11.47884 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.001925 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.843046 B =14538.945583 C =15204.324917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C 0.170 3.830 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.122 4.122 14 C 0.106 3.894 15 N -0.599 5.599 16 C 0.605 3.395 17 O -0.517 6.517 18 C -0.008 4.008 19 C -0.150 4.150 20 C 0.033 3.967 21 C 0.042 3.958 22 C -0.157 4.157 23 C -0.215 4.215 24 C -0.013 4.013 25 O -0.158 6.158 26 O 0.140 5.860 27 N -0.317 5.317 28 C 0.121 3.879 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.026 0.974 33 H 0.022 0.978 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.188 0.812 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.213 0.787 44 H 0.077 0.923 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -30.067 9.464 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 C 0.042 3.958 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.161 4.161 14 C -0.017 4.017 15 N -0.332 5.332 16 C 0.390 3.610 17 O -0.392 6.392 18 C -0.166 4.166 19 C -0.172 4.172 20 C -0.030 4.030 21 C -0.008 4.008 22 C -0.177 4.177 23 C -0.234 4.234 24 C -0.082 4.082 25 O -0.053 6.053 26 O 0.062 5.938 27 N -0.017 5.017 28 C 0.000 4.000 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.205 0.795 41 H 0.178 0.822 42 H 0.175 0.825 43 H 0.230 0.770 44 H 0.095 0.905 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.256 -28.896 9.589 30.529 hybrid contribution 0.009 0.341 -0.993 1.050 sum 2.265 -28.555 8.596 29.907 Atomic orbital electron populations 1.21684 0.93196 1.00756 1.03165 1.22015 0.96595 0.96022 0.93210 1.20580 0.95661 0.87566 0.92019 1.42414 1.55978 1.10853 1.28357 1.19255 1.22377 0.87855 1.07627 0.91120 1.24744 0.99956 0.98342 0.97900 1.69670 1.35490 1.36190 1.16666 0.86124 0.77525 0.84992 0.77575 1.20585 1.21897 1.21920 1.22747 1.02420 0.92616 0.98276 1.22129 1.02065 0.98293 0.79240 1.48373 1.70585 1.06779 1.07474 1.16389 0.78110 0.81034 0.85427 1.90851 1.50379 1.84695 1.13243 1.23349 1.06763 0.97209 0.89284 1.22748 1.03870 0.88504 1.02076 1.20437 1.06760 0.90273 0.85500 1.18041 1.11261 0.87671 0.83871 1.22007 1.03849 0.91439 1.00371 1.21839 1.08469 0.99422 0.93624 1.24386 1.03816 0.81442 0.98569 1.84078 1.71003 1.19489 1.30757 1.84941 1.66201 1.13051 1.29610 1.74284 1.16019 0.92419 1.18970 1.22520 1.02069 0.76858 0.98562 0.92385 0.90866 0.93706 0.95649 0.96005 0.78031 0.93532 0.89741 0.90206 0.91040 0.91183 0.79473 0.82164 0.82465 0.77014 0.90490 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.42 37.16 0.31 -1.79 16 2 C -0.08 -1.23 0.63 -152.23 -0.10 -1.32 16 3 C 0.17 3.29 5.25 -4.04 -0.02 3.27 16 4 N -0.73 -18.15 5.18 -59.90 -0.31 -18.46 16 5 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 9 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 C -0.12 -1.50 5.91 -24.90 -0.15 -1.64 16 14 C 0.11 1.31 5.23 -3.07 -0.02 1.29 16 15 N -0.60 -9.18 3.31 -171.31 -0.57 -9.75 16 16 C 0.61 9.87 7.88 -12.10 -0.10 9.77 16 17 O -0.52 -10.06 17.20 5.37 0.09 -9.97 16 18 C -0.01 -0.11 7.01 -82.66 -0.58 -0.69 16 19 C -0.15 -1.72 10.96 -38.64 -0.42 -2.14 16 20 C 0.03 0.33 7.30 -36.42 -0.27 0.07 16 21 C 0.04 0.36 7.17 -36.71 -0.26 0.10 16 22 C -0.16 -1.05 10.86 -39.34 -0.43 -1.47 16 23 C -0.21 -1.08 10.88 -39.84 -0.43 -1.52 16 24 C -0.01 -0.07 12.08 29.55 0.36 0.29 16 25 O -0.16 -1.28 10.67 4.55 0.05 -1.23 16 26 O 0.14 1.45 11.21 15.71 0.18 1.63 16 27 N -0.32 -3.83 9.69 33.36 0.32 -3.50 16 28 C 0.12 2.07 5.62 -2.41 -0.01 2.06 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.39 6.65 -51.93 -0.35 1.04 16 31 H 0.04 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.38 10.10 6.23 -40.82 -0.25 9.85 16 35 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 37 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 38 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 39 H 0.07 0.81 7.78 -51.92 -0.40 0.41 16 40 H 0.19 1.94 8.06 -52.49 -0.42 1.51 16 41 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.21 0.20 8.06 -52.49 -0.42 -0.23 16 44 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 45 H 0.09 1.73 7.95 -51.93 -0.41 1.32 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -33.63 382.91 -7.10 -40.73 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.98 Total: 5.92 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.36 Total: -1.04 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.17 Total: -59.36 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.32 Total: -9.57 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.63 -7.10 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724239362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.713 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds