Wall clock time and date at job start Wed Apr 1 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46243 * 2 1 4 4 N 1.46500 * 109.46856 * 299.97114 * 3 2 1 5 5 C 1.34777 * 120.00124 * 180.02562 * 4 3 2 6 6 O 1.21285 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99857 * 180.02562 * 5 4 3 8 8 H 1.08999 * 109.34501 * 319.29391 * 7 5 4 9 9 C 1.54063 * 109.35606 * 79.01468 * 7 5 4 10 10 C 1.55571 * 104.31316 * 165.43533 * 9 7 5 11 11 S 1.83445 * 100.68236 * 321.99123 * 10 9 7 12 12 O 1.42103 * 111.24907 * 270.77122 * 11 10 9 13 13 O 1.42100 * 111.25055 * 131.52251 * 11 10 9 14 14 N 1.47066 * 109.35215 * 199.58288 * 7 5 4 15 15 C 1.53047 * 109.45940 * 119.96801 * 2 1 3 16 16 C 1.53194 * 109.30989 * 58.64155 * 15 2 1 17 17 N 1.46928 * 108.77533 * 54.63464 * 16 15 2 18 18 C 1.36943 * 120.63200 * 126.36194 * 17 16 15 19 19 H 1.07996 * 120.00187 * 332.51186 * 18 17 16 20 20 C 1.38813 * 119.99684 * 152.49896 * 18 17 16 21 21 N 1.31611 * 120.00142 * 335.03857 * 20 18 17 22 22 Si 1.86800 * 119.99591 * 155.03469 * 20 18 17 23 23 H 1.48500 * 109.47333 * 60.00024 * 22 20 18 24 24 H 1.48504 * 109.47136 * 300.00426 * 22 20 18 25 25 H 1.48494 * 109.47269 * 180.02562 * 22 20 18 26 26 C 1.46922 * 118.74014 * 306.64471 * 17 16 15 27 27 C 1.52761 * 109.01085 * 53.30497 * 26 17 16 28 28 H 1.09008 * 109.47214 * 300.03165 * 1 2 3 29 29 H 1.08999 * 109.47523 * 60.02680 * 1 2 3 30 30 H 1.08999 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46995 * 59.96851 * 3 2 1 32 32 H 1.08997 * 109.47221 * 179.97438 * 3 2 1 33 33 H 0.97007 * 119.99956 * 0.02562 * 4 3 2 34 34 H 1.09002 * 110.46290 * 284.07485 * 9 7 5 35 35 H 1.08995 * 110.47400 * 46.67418 * 9 7 5 36 36 H 1.09000 * 111.14145 * 204.15846 * 10 9 7 37 37 H 1.09001 * 111.26493 * 79.87558 * 10 9 7 38 38 H 0.97001 * 126.30324 * 30.82530 * 14 7 5 39 39 H 1.08999 * 109.49664 * 298.69095 * 15 2 1 40 40 H 1.09002 * 109.49342 * 178.59010 * 15 2 1 41 41 H 1.08992 * 109.58707 * 294.84527 * 16 15 2 42 42 H 1.09003 * 109.70449 * 174.48619 * 16 15 2 43 43 H 0.96996 * 120.00423 * 354.25179 * 21 20 18 44 44 H 1.08995 * 109.59171 * 173.14375 * 26 17 16 45 45 H 1.09008 * 109.58606 * 293.56943 * 26 17 16 46 46 H 1.09001 * 109.56835 * 185.55517 * 27 26 17 47 47 H 1.09004 * 109.38371 * 65.51803 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 -1.1965 5 6 1.8777 3.4231 -1.4102 6 8 2.5745 4.0128 -0.6117 7 6 1.3753 4.1333 -2.6408 8 1 1.4347 3.4599 -3.4959 9 6 -0.0905 4.5555 -2.4241 10 6 -0.3677 5.5801 -3.5614 11 16 1.2373 6.4665 -3.6192 12 8 1.2460 7.5746 -2.7296 13 8 1.7193 6.5728 -4.9517 14 7 2.2090 5.3179 -2.8944 15 6 2.0398 -0.7208 1.2501 16 6 1.4992 -2.1541 1.2643 17 7 1.8619 -2.8089 0.0000 18 6 2.5261 -4.0065 -0.0001 19 1 3.1658 -4.2692 0.8294 20 6 2.3769 -4.8827 -1.0663 21 7 1.2904 -4.8383 -1.8076 22 14 3.7185 -6.1250 -1.4489 23 1 3.9171 -7.0158 -0.2775 24 1 4.9853 -5.4095 -1.7469 25 1 3.3202 -6.9368 -2.6268 26 6 1.5039 -2.1514 -1.2642 27 6 2.0395 -0.7209 -1.2501 28 1 -0.3634 0.5144 0.8898 29 1 -0.3634 0.5134 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 1.6758 1.9565 0.8897 32 1 3.1297 1.4428 0.0005 33 1 0.9942 1.6613 -1.8351 34 1 -0.7528 3.6949 -2.5180 35 1 -0.2114 5.0260 -1.4484 36 1 -1.1806 6.2549 -3.2930 37 1 -0.5734 5.0764 -4.5059 38 1 3.1503 5.4142 -2.6805 39 1 1.6959 -0.1934 2.1399 40 1 3.1295 -0.7431 1.2381 41 1 0.4143 -2.1345 1.3676 42 1 1.9357 -2.7033 2.0986 43 1 0.5582 -4.2521 -1.5603 44 1 1.9456 -2.6973 -2.0978 45 1 0.4193 -2.1315 -1.3714 46 1 1.6955 -0.1935 -2.1398 47 1 3.1293 -0.7426 -1.2387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724307301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:49 Heat of formation + Delta-G solvation = -83.988975 kcal Electronic energy + Delta-G solvation = -29254.700517 eV Core-core repulsion = 25179.134037 eV Total energy + Delta-G solvation = -4075.566480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.49953 -38.95630 -37.43879 -36.90475 -36.24250 -35.38388 -33.48113 -32.23741 -31.00325 -30.14100 -28.19720 -27.18838 -26.14260 -24.02594 -23.23032 -22.47762 -20.94985 -20.67218 -19.99338 -18.56057 -18.19597 -17.75429 -17.21813 -16.77745 -16.21433 -15.98002 -15.48063 -15.20712 -14.86562 -14.45177 -14.40818 -14.08439 -13.92368 -13.82226 -13.71855 -13.57392 -13.24276 -12.97632 -12.83595 -12.53408 -12.40908 -12.35286 -12.12355 -12.04552 -11.78961 -11.52832 -11.16987 -11.08661 -11.02401 -10.73919 -10.49802 -10.41989 -10.30891 -10.10586 -10.01800 -9.83024 -9.72694 -9.31161 -9.21640 -8.41592 -6.92929 -6.12095 -3.28039 -0.22443 2.02501 2.29146 2.88003 3.13610 3.41987 3.46188 3.49382 3.67094 3.77356 3.92112 4.22211 4.35028 4.55023 4.64858 4.76264 4.84502 4.90072 4.94999 5.00762 5.10082 5.15832 5.20620 5.42775 5.54645 5.64693 5.73949 5.86287 5.89074 5.92062 6.09805 6.19448 6.22936 6.29408 6.39702 6.45159 6.55815 6.65219 6.67036 6.76197 6.98738 7.13819 7.24891 7.91443 7.95845 8.52728 9.06633 9.79491 10.23740 11.16419 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.002276 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.312074 B =12296.762705 C =12763.937231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.129 3.871 4 N -0.717 5.717 5 C 0.511 3.489 6 O -0.525 6.525 7 C 0.094 3.906 8 H 0.109 0.891 9 C -0.120 4.120 10 C -0.596 4.596 11 S 2.579 3.421 12 O -0.954 6.954 13 O -0.954 6.954 14 N -1.083 6.083 15 C -0.120 4.120 16 C 0.148 3.852 17 N -0.598 5.598 18 C -0.349 4.349 19 H 0.055 0.945 20 C -0.024 4.024 21 N -0.916 5.916 22 Si 1.062 2.938 23 H -0.293 1.293 24 H -0.294 1.294 25 H -0.286 1.286 26 C 0.151 3.849 27 C -0.125 4.125 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.403 0.597 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.440 0.560 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.268 0.732 44 H 0.077 0.923 45 H 0.019 0.981 46 H 0.047 0.953 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 18.855 -2.566 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C 0.006 3.994 4 N -0.370 5.370 5 C 0.294 3.706 6 O -0.401 6.401 7 C -0.018 4.018 8 H 0.127 0.873 9 C -0.159 4.159 10 C -0.726 4.726 11 S 2.673 3.327 12 O -0.943 6.943 13 O -0.944 6.944 14 N -0.850 5.850 15 C -0.160 4.160 16 C 0.022 3.978 17 N -0.322 5.322 18 C -0.478 4.478 19 H 0.073 0.927 20 C -0.225 4.225 21 N -0.556 5.556 22 Si 0.892 3.108 23 H -0.220 1.220 24 H -0.221 1.221 25 H -0.211 1.211 26 C 0.025 3.975 27 C -0.164 4.164 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.239 0.761 34 H 0.139 0.861 35 H 0.121 0.879 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.281 0.719 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.037 0.963 46 H 0.066 0.934 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.668 18.975 -3.421 19.838 hybrid contribution -0.658 0.369 1.149 1.375 sum -5.326 19.344 -2.272 20.192 Atomic orbital electron populations 1.21943 0.94623 1.02955 1.00422 1.20704 0.95792 0.92134 0.97878 1.21583 0.99257 0.92112 0.86443 1.46116 1.53225 1.11405 1.26247 1.20257 0.81127 0.82195 0.87024 1.90745 1.37288 1.65974 1.46055 1.21654 0.90874 0.90516 0.98785 0.87313 1.22638 0.93326 1.01095 0.98888 1.30850 1.21557 1.12615 1.07623 1.06140 0.77954 0.73983 0.74629 1.93646 1.85630 1.49985 1.65039 1.93648 1.77635 1.85654 1.37444 1.54994 1.21819 1.28026 1.80165 1.21990 1.00924 0.98049 0.95014 1.20903 0.96212 0.90652 0.90059 1.44078 1.67677 1.21231 0.99185 1.19973 1.23105 0.94942 1.09769 0.92709 1.25807 1.00771 0.98979 0.96990 1.70791 1.03850 1.38141 1.42852 0.83559 0.75248 0.75807 0.76175 1.21991 1.22089 1.21104 1.20869 0.96247 0.89707 0.90693 1.22066 1.01004 0.98653 0.94663 0.93140 0.93590 0.90940 0.91566 0.91408 0.76125 0.86112 0.87877 0.83513 0.83466 0.71882 0.92759 0.91991 0.96303 0.92729 0.92105 0.90418 0.96334 0.93434 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.54 37.15 0.28 -1.46 16 2 C -0.06 -0.87 0.53 -154.47 -0.08 -0.95 16 3 C 0.13 1.56 4.56 -4.04 -0.02 1.54 16 4 N -0.72 -6.94 4.95 -60.29 -0.30 -7.24 16 5 C 0.51 5.31 7.06 -10.98 -0.08 5.24 16 6 O -0.53 -7.62 16.40 5.55 0.09 -7.53 16 7 C 0.09 0.65 3.41 -68.22 -0.23 0.42 16 8 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 9 C -0.12 -0.52 6.09 -24.81 -0.15 -0.68 16 10 C -0.60 -2.07 7.51 38.53 0.29 -1.78 16 11 S 2.58 20.46 6.49 -107.50 -0.70 19.77 16 12 O -0.95 -11.34 18.14 -57.41 -1.04 -12.38 16 13 O -0.95 -10.70 18.13 -57.41 -1.04 -11.74 16 14 N -1.08 -9.00 6.31 -5.08 -0.03 -9.03 16 15 C -0.12 -1.85 4.91 -26.61 -0.13 -1.98 16 16 C 0.15 2.85 6.05 -3.71 -0.02 2.82 16 17 N -0.60 -13.86 2.86 -172.58 -0.49 -14.35 16 18 C -0.35 -9.32 9.49 -15.06 -0.14 -9.46 16 19 H 0.06 1.49 7.94 -52.49 -0.42 1.07 16 20 C -0.02 -0.64 4.68 -17.43 -0.08 -0.72 16 21 N -0.92 -26.27 12.41 55.49 0.69 -25.58 16 22 Si 1.06 24.50 29.99 -169.99 -5.10 19.40 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.15 3.15 4.20 -3.93 -0.02 3.13 16 27 C -0.12 -1.98 4.73 -26.83 -0.13 -2.11 16 28 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.05 0.46 6.86 -51.93 -0.36 0.10 16 30 H 0.07 1.08 4.99 -51.93 -0.26 0.82 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.40 3.07 6.16 -40.82 -0.25 2.82 16 34 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.15 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.15 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.44 3.80 8.74 -40.34 -0.35 3.45 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.36 6.69 -51.93 -0.35 0.01 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.27 7.67 6.71 -40.82 -0.27 7.40 16 44 H 0.08 1.90 6.30 -51.93 -0.33 1.57 16 45 H 0.02 0.39 6.43 -51.92 -0.33 0.06 16 46 H 0.05 0.63 6.82 -51.93 -0.35 0.27 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -37.29 372.85 -9.94 -47.24 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.13 Total: 1.83 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.51 Total: -6.01 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.13 Total: -56.20 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.99 Total: -31.65 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.10 Total: 19.40 kcal Atomic # 16 Polarization: 20.46 SS G_CDS: -0.70 Total: 19.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.29 -9.94 -47.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724307301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.752 kcal (2) G-P(sol) polarization free energy of solvation -37.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds