Wall clock time and date at job start Wed Apr 1 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46243 * 2 1 4 4 N 1.46500 * 109.46856 * 299.97114 * 3 2 1 5 5 C 1.34777 * 120.00124 * 180.02562 * 4 3 2 6 6 O 1.21285 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99857 * 180.02562 * 5 4 3 8 8 H 1.08999 * 109.34501 * 319.29391 * 7 5 4 9 9 C 1.54063 * 109.35606 * 79.01468 * 7 5 4 10 10 C 1.55571 * 104.31316 * 165.43533 * 9 7 5 11 11 S 1.83445 * 100.68236 * 321.99123 * 10 9 7 12 12 O 1.42103 * 111.24907 * 270.77122 * 11 10 9 13 13 O 1.42100 * 111.25055 * 131.52251 * 11 10 9 14 14 N 1.47066 * 109.35215 * 199.58288 * 7 5 4 15 15 C 1.53047 * 109.45940 * 119.96801 * 2 1 3 16 16 C 1.53194 * 109.30989 * 58.64155 * 15 2 1 17 17 N 1.46928 * 108.77533 * 54.63464 * 16 15 2 18 18 C 1.36943 * 120.63200 * 126.36194 * 17 16 15 19 19 H 1.07996 * 120.00187 * 332.51186 * 18 17 16 20 20 C 1.38813 * 119.99684 * 152.49896 * 18 17 16 21 21 N 1.31611 * 120.00142 * 335.03857 * 20 18 17 22 22 Si 1.86800 * 119.99591 * 155.03469 * 20 18 17 23 23 H 1.48500 * 109.47333 * 60.00024 * 22 20 18 24 24 H 1.48504 * 109.47136 * 300.00426 * 22 20 18 25 25 H 1.48494 * 109.47269 * 180.02562 * 22 20 18 26 26 C 1.46922 * 118.74014 * 306.64471 * 17 16 15 27 27 C 1.52761 * 109.01085 * 53.30497 * 26 17 16 28 28 H 1.09008 * 109.47214 * 300.03165 * 1 2 3 29 29 H 1.08999 * 109.47523 * 60.02680 * 1 2 3 30 30 H 1.08999 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46995 * 59.96851 * 3 2 1 32 32 H 1.08997 * 109.47221 * 179.97438 * 3 2 1 33 33 H 0.97007 * 119.99956 * 0.02562 * 4 3 2 34 34 H 1.09002 * 110.46290 * 284.07485 * 9 7 5 35 35 H 1.08995 * 110.47400 * 46.67418 * 9 7 5 36 36 H 1.09000 * 111.14145 * 204.15846 * 10 9 7 37 37 H 1.09001 * 111.26493 * 79.87558 * 10 9 7 38 38 H 0.97001 * 126.30324 * 30.82530 * 14 7 5 39 39 H 1.08999 * 109.49664 * 298.69095 * 15 2 1 40 40 H 1.09002 * 109.49342 * 178.59010 * 15 2 1 41 41 H 1.08992 * 109.58707 * 294.84527 * 16 15 2 42 42 H 1.09003 * 109.70449 * 174.48619 * 16 15 2 43 43 H 0.96996 * 120.00423 * 354.25179 * 21 20 18 44 44 H 1.08995 * 109.59171 * 173.14375 * 26 17 16 45 45 H 1.09008 * 109.58606 * 293.56943 * 26 17 16 46 46 H 1.09001 * 109.56835 * 185.55517 * 27 26 17 47 47 H 1.09004 * 109.38371 * 65.51803 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5518 2.1329 -1.1965 5 6 1.8777 3.4231 -1.4102 6 8 2.5745 4.0128 -0.6117 7 6 1.3753 4.1333 -2.6408 8 1 1.4347 3.4599 -3.4959 9 6 -0.0905 4.5555 -2.4241 10 6 -0.3677 5.5801 -3.5614 11 16 1.2373 6.4665 -3.6192 12 8 1.2460 7.5746 -2.7296 13 8 1.7193 6.5728 -4.9517 14 7 2.2090 5.3179 -2.8944 15 6 2.0398 -0.7208 1.2501 16 6 1.4992 -2.1541 1.2643 17 7 1.8619 -2.8089 0.0000 18 6 2.5261 -4.0065 -0.0001 19 1 3.1658 -4.2692 0.8294 20 6 2.3769 -4.8827 -1.0663 21 7 1.2904 -4.8383 -1.8076 22 14 3.7185 -6.1250 -1.4489 23 1 3.9171 -7.0158 -0.2775 24 1 4.9853 -5.4095 -1.7469 25 1 3.3202 -6.9368 -2.6268 26 6 1.5039 -2.1514 -1.2642 27 6 2.0395 -0.7209 -1.2501 28 1 -0.3634 0.5144 0.8898 29 1 -0.3634 0.5134 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 1.6758 1.9565 0.8897 32 1 3.1297 1.4428 0.0005 33 1 0.9942 1.6613 -1.8351 34 1 -0.7528 3.6949 -2.5180 35 1 -0.2114 5.0260 -1.4484 36 1 -1.1806 6.2549 -3.2930 37 1 -0.5734 5.0764 -4.5059 38 1 3.1503 5.4142 -2.6805 39 1 1.6959 -0.1934 2.1399 40 1 3.1295 -0.7431 1.2381 41 1 0.4143 -2.1345 1.3676 42 1 1.9357 -2.7033 2.0986 43 1 0.5582 -4.2521 -1.5603 44 1 1.9456 -2.6973 -2.0978 45 1 0.4193 -2.1315 -1.3714 46 1 1.6955 -0.1935 -2.1398 47 1 3.1293 -0.7426 -1.2387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724307301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:48 Heat of formation + Delta-G solvation = -115.106152 kcal Electronic energy + Delta-G solvation = -29256.049859 eV Core-core repulsion = 25179.134037 eV Total energy + Delta-G solvation = -4076.915822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.37392 -40.16439 -38.14460 -37.58604 -36.95713 -36.73568 -34.82637 -32.76407 -32.55845 -31.68580 -29.12836 -28.39384 -27.16825 -25.55576 -24.09465 -23.63414 -22.41827 -21.49142 -20.59212 -19.88161 -19.27253 -18.66964 -18.30297 -17.60201 -17.00253 -16.69589 -16.32910 -16.25318 -16.01412 -15.83704 -15.45328 -15.23111 -15.20001 -15.12124 -14.81648 -14.31638 -14.28015 -14.11990 -13.66107 -13.39576 -13.27207 -13.21426 -13.09349 -12.99258 -12.83893 -12.61676 -12.53337 -12.48449 -12.36425 -11.94656 -11.91683 -11.65808 -11.59153 -11.53926 -11.24192 -11.09703 -11.03495 -10.48103 -10.41675 -10.10650 -8.86177 -8.20755 -5.35387 -0.75480 1.39322 1.58713 1.61295 1.64754 1.83791 2.13158 2.63702 2.66356 2.94545 3.23164 3.37133 3.46768 3.59308 3.69834 3.77531 3.79852 3.89096 3.92122 4.25017 4.34760 4.37245 4.42910 4.53262 4.61456 4.65280 4.74406 4.77803 4.80296 4.83049 4.85963 4.89747 5.01246 5.07626 5.15674 5.23503 5.29720 5.32127 5.41159 5.44317 5.65710 5.86955 5.98746 6.44836 6.50453 7.12258 7.16198 7.83304 8.26613 9.03781 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.002276 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.312074 B =12296.762705 C =12763.937231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C 0.141 3.859 4 N -0.707 5.707 5 C 0.512 3.488 6 O -0.572 6.572 7 C 0.089 3.911 8 H 0.143 0.857 9 C -0.122 4.122 10 C -0.551 4.551 11 S 2.567 3.433 12 O -1.006 7.006 13 O -0.997 6.997 14 N -1.092 6.092 15 C -0.113 4.113 16 C 0.145 3.855 17 N -0.618 5.618 18 C -0.355 4.355 19 H 0.043 0.957 20 C -0.072 4.072 21 N -0.940 5.940 22 Si 1.108 2.892 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.291 1.291 26 C 0.157 3.843 27 C -0.113 4.113 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.416 0.584 34 H 0.161 0.839 35 H 0.097 0.903 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.434 0.566 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.026 0.974 42 H 0.040 0.960 43 H 0.257 0.743 44 H 0.036 0.964 45 H 0.018 0.982 46 H 0.082 0.918 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 19.612 -3.058 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 C 0.017 3.983 4 N -0.360 5.360 5 C 0.297 3.703 6 O -0.451 6.451 7 C -0.022 4.022 8 H 0.160 0.840 9 C -0.162 4.162 10 C -0.686 4.686 11 S 2.667 3.333 12 O -0.996 6.996 13 O -0.987 6.987 14 N -0.858 5.858 15 C -0.152 4.152 16 C 0.019 3.981 17 N -0.343 5.343 18 C -0.485 4.485 19 H 0.061 0.939 20 C -0.269 4.269 21 N -0.582 5.582 22 Si 0.934 3.066 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.217 1.217 26 C 0.032 3.968 27 C -0.152 4.152 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.255 0.745 34 H 0.179 0.821 35 H 0.116 0.884 36 H 0.192 0.808 37 H 0.199 0.801 38 H 0.274 0.726 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.036 0.964 46 H 0.100 0.900 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.597 19.771 -3.911 21.206 hybrid contribution -0.112 0.080 1.381 1.388 sum -6.709 19.851 -2.530 21.106 Atomic orbital electron populations 1.21895 0.92890 1.01789 1.02914 1.20560 0.96976 0.92502 0.95390 1.21265 0.98216 0.90953 0.87850 1.45963 1.53065 1.11277 1.25717 1.20844 0.80100 0.81972 0.87416 1.90736 1.39415 1.66993 1.47926 1.22034 0.91995 0.90254 0.97942 0.83967 1.22856 0.91859 1.02647 0.98816 1.30663 1.17032 1.11671 1.09230 1.06272 0.79953 0.73918 0.73176 1.93579 1.87125 1.52995 1.65856 1.93591 1.79792 1.86425 1.38874 1.55030 1.21825 1.28773 1.80167 1.21875 0.99911 0.95917 0.97522 1.21027 0.96593 0.92500 0.87937 1.44324 1.67869 1.20826 1.01261 1.20181 1.22696 0.96277 1.09341 0.93914 1.26982 1.01889 1.00767 0.97286 1.70890 1.04422 1.39167 1.43762 0.82928 0.73347 0.74227 0.76128 1.20526 1.21009 1.21664 1.20756 0.95925 0.91804 0.88328 1.21906 0.99597 0.96036 0.97656 0.91389 0.90504 0.93820 0.90964 0.93187 0.74510 0.82128 0.88443 0.80779 0.80092 0.72630 0.89913 0.93491 0.95632 0.94181 0.93330 0.94524 0.96393 0.90002 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 7.54 71.98 0.54 -2.33 16 2 C -0.05 -1.32 0.53 -52.16 -0.03 -1.35 16 3 C 0.14 3.01 4.56 86.38 0.39 3.41 16 4 N -0.71 -11.04 4.95 -463.05 -2.29 -13.33 16 5 C 0.51 9.23 7.06 87.66 0.62 9.85 16 6 O -0.57 -15.99 16.40 -3.05 -0.05 -16.04 16 7 C 0.09 0.92 3.41 44.50 0.15 1.07 16 8 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 9 C -0.12 -0.44 6.09 31.84 0.19 -0.25 16 10 C -0.55 -1.10 7.51 72.87 0.55 -0.55 16 11 S 2.57 38.05 6.49 -56.49 -0.37 37.69 16 12 O -1.01 -24.36 18.14 -127.77 -2.32 -26.67 16 13 O -1.00 -22.11 18.13 -127.77 -2.32 -24.43 16 14 N -1.09 -16.98 6.31 -169.99 -1.07 -18.06 16 15 C -0.11 -3.32 4.91 30.67 0.15 -3.17 16 16 C 0.14 5.54 6.05 86.36 0.52 6.07 16 17 N -0.62 -29.10 2.86 -699.93 -2.00 -31.10 16 18 C -0.35 -19.40 9.49 84.03 0.80 -18.61 16 19 H 0.04 2.39 7.94 -2.91 -0.02 2.36 16 20 C -0.07 -4.01 4.68 84.86 0.40 -3.62 16 21 N -0.94 -55.09 12.41 21.65 0.27 -54.82 16 22 Si 1.11 50.10 29.99 68.60 2.06 52.16 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 26 C 0.16 6.60 4.20 86.22 0.36 6.96 16 27 C -0.11 -3.43 4.73 30.53 0.14 -3.28 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.12 6.86 -2.39 -0.02 1.11 16 30 H 0.04 1.19 4.99 -2.39 -0.01 1.18 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 4.20 6.16 -92.70 -0.57 3.63 16 34 H 0.16 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.10 0.56 8.10 -2.39 -0.02 0.54 16 36 H 0.17 -0.38 8.14 -2.39 -0.02 -0.39 16 37 H 0.18 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.43 7.69 8.74 -93.01 -0.81 6.87 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.03 0.96 6.69 -2.39 -0.02 0.94 16 42 H 0.04 1.61 7.93 -2.39 -0.02 1.59 16 43 H 0.26 15.11 6.71 -92.71 -0.62 14.49 16 44 H 0.04 1.82 6.30 -2.39 -0.02 1.81 16 45 H 0.02 0.76 6.43 -2.38 -0.02 0.74 16 46 H 0.08 1.90 6.82 -2.39 -0.02 1.89 16 47 H 0.04 1.38 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -87.34 372.85 -3.53 -90.86 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -0.23 Total: 9.53 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 4.80 Total: -5.79 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -5.09 Total: -117.30 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -4.68 Total: -67.14 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 2.06 Total: 52.16 kcal Atomic # 16 Polarization: 38.05 SS G_CDS: -0.37 Total: 37.69 kcal Total: -87.34 -3.53 -90.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724307301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.244 kcal (2) G-P(sol) polarization free energy of solvation -87.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds