Wall clock time and date at job start Wed Apr 1 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30026 * 124.83687 * 2 1 4 4 C 1.35844 * 108.85362 * 179.97438 * 3 2 1 5 5 C 1.39840 * 133.62435 * 179.97438 * 4 3 2 6 6 C 1.36293 * 120.03726 * 179.74259 * 5 4 3 7 7 C 1.40086 * 120.41693 * 0.55799 * 6 5 4 8 8 C 1.47627 * 119.92975 * 179.71737 * 7 6 5 9 9 O 1.21583 * 120.00361 * 179.72814 * 8 7 6 10 10 N 1.34776 * 120.00024 * 359.72117 * 8 7 6 11 11 C 1.46496 * 120.00377 * 183.46002 * 10 8 7 12 12 C 1.53000 * 113.28106 * 306.25730 * 11 10 8 13 13 C 1.52997 * 109.46713 * 292.15229 * 12 11 10 14 14 O 1.42901 * 109.46805 * 184.81199 * 13 12 11 15 15 C 1.53498 * 114.20540 * 173.18724 * 11 10 8 16 16 N 1.47073 * 87.98489 * 220.14962 * 15 11 10 17 17 C 1.36936 * 136.06134 * 207.08655 * 16 15 11 18 18 H 1.07994 * 119.99480 * 354.42541 * 17 16 15 19 19 C 1.38810 * 120.00130 * 174.41864 * 17 16 15 20 20 N 1.31624 * 119.99819 * 182.15930 * 19 17 16 21 21 Si 1.86794 * 120.00161 * 2.43487 * 19 17 16 22 22 H 1.48503 * 109.47399 * 173.51219 * 21 19 17 23 23 H 1.48503 * 109.47243 * 293.51759 * 21 19 17 24 24 H 1.48507 * 109.47103 * 53.51256 * 21 19 17 25 25 C 1.47070 * 87.88565 * 27.34177 * 16 15 11 26 26 C 1.39440 * 120.14525 * 359.44325 * 7 6 5 27 27 C 1.38288 * 119.61440 * 0.27026 * 26 7 6 28 28 O 1.34141 * 124.84183 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47212 * 89.97871 * 1 2 3 30 30 H 1.08997 * 109.47039 * 209.97386 * 1 2 3 31 31 H 1.08996 * 109.47354 * 329.97866 * 1 2 3 32 32 H 1.08000 * 119.98103 * 0.04463 * 5 4 3 33 33 H 1.08001 * 119.78871 * 180.27134 * 6 5 4 34 34 H 0.97006 * 119.99804 * 3.46540 * 10 8 7 35 35 H 1.08997 * 109.47250 * 52.15504 * 12 11 10 36 36 H 1.08998 * 109.47001 * 172.15504 * 12 11 10 37 37 H 1.08999 * 109.47409 * 304.80805 * 13 12 11 38 38 H 1.08999 * 109.47760 * 64.81314 * 13 12 11 39 39 H 0.96707 * 114.00028 * 180.02562 * 14 13 12 40 40 H 1.08997 * 113.46934 * 105.37402 * 15 11 10 41 41 H 1.08995 * 113.52051 * 334.93528 * 15 11 10 42 42 H 0.96998 * 119.99874 * 5.30337 * 20 19 17 43 43 H 1.09004 * 113.46442 * 87.43643 * 25 16 15 44 44 H 1.08993 * 113.46922 * 217.88049 * 25 16 15 45 45 H 1.07996 * 120.18837 * 180.25365 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2497 1.0672 0.0000 4 6 3.5556 0.6932 0.0006 5 6 4.7619 1.4007 0.0004 6 6 5.9473 0.7281 0.0064 7 6 5.9680 -0.6726 0.0011 8 6 7.2582 -1.3902 0.0014 9 8 7.2777 -2.6058 0.0018 10 7 8.4144 -0.6977 0.0012 11 6 9.6935 -1.4077 -0.0751 12 6 9.8523 -2.4848 0.9999 13 6 9.9611 -1.8213 2.3743 14 8 10.2213 -2.8178 3.3649 15 6 10.9142 -0.4903 -0.2321 16 7 11.4631 -1.4699 -1.1819 17 6 12.7120 -1.8464 -1.5987 18 1 13.5814 -1.3046 -1.2568 19 6 12.8604 -2.9243 -2.4605 20 7 14.0634 -3.3127 -2.8275 21 14 11.3529 -3.8189 -3.1057 22 1 11.7680 -4.8205 -4.1204 23 1 10.6672 -4.5071 -1.9825 24 1 10.4247 -2.8403 -3.7270 25 6 10.0802 -1.8628 -1.4920 26 6 4.7727 -1.3907 0.0013 27 6 3.5678 -0.7120 0.0010 28 8 2.2733 -1.1009 0.0005 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5141 32 1 4.7541 2.4806 0.0004 33 1 6.8765 1.2785 0.0107 34 1 8.3996 0.2710 0.0516 35 1 8.9857 -3.1456 0.9830 36 1 10.7547 -3.0638 0.8036 37 1 10.7756 -1.0971 2.3648 38 1 9.0256 -1.3129 2.6075 39 1 10.3023 -2.4681 4.2629 40 1 11.5037 -0.3923 0.6794 41 1 10.6796 0.4716 -0.6878 42 1 14.8476 -2.8965 -2.4368 43 1 9.6248 -1.2628 -2.2799 44 1 9.9591 -2.9338 -1.6536 45 1 4.7879 -2.4705 0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725201426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:12 Heat of formation + Delta-G solvation = 28.439528 kcal Electronic energy + Delta-G solvation = -30039.322962 eV Core-core repulsion = 25833.187796 eV Total energy + Delta-G solvation = -4206.135166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.66864 -40.59699 -38.94619 -37.50760 -36.54952 -35.22952 -34.04233 -32.49219 -31.91620 -31.13536 -30.64896 -28.69210 -27.24649 -25.72021 -24.19365 -23.63965 -22.91485 -22.05430 -21.66578 -20.52586 -19.12868 -18.55062 -17.93130 -17.53356 -17.31100 -17.27170 -16.74678 -15.89764 -15.51753 -15.26991 -14.94907 -14.55447 -14.45025 -14.26328 -14.01870 -13.93836 -13.74150 -13.63994 -13.50964 -13.12372 -12.93920 -12.77371 -12.23793 -12.00840 -11.97898 -11.88429 -11.58349 -11.53139 -11.22119 -10.90650 -10.86163 -10.49855 -10.38698 -9.96190 -9.58605 -9.36351 -9.28977 -9.14675 -8.95298 -8.87821 -8.66662 -7.22914 -6.33457 -3.29052 0.02287 0.78906 1.80185 1.99318 2.74060 3.08717 3.32084 3.46619 3.49168 3.49846 3.67924 4.07036 4.25192 4.41956 4.50430 4.51681 4.58945 4.66240 4.70932 4.79518 4.88480 4.94120 4.95441 5.11217 5.34967 5.37732 5.46655 5.50480 5.52808 5.59386 5.67795 5.73427 5.81739 5.86159 5.90132 6.03083 6.11586 6.19719 6.20682 6.30600 6.51815 6.68210 6.91451 6.98624 7.16353 7.53480 7.77934 8.19278 8.21581 8.93079 9.44578 10.26748 11.17804 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.002700 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.973722 B =10367.093891 C =11000.246905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.254 3.746 3 N -0.484 5.484 4 C 0.044 3.956 5 C -0.068 4.068 6 C -0.087 4.087 7 C -0.106 4.106 8 C 0.560 3.440 9 O -0.520 6.520 10 N -0.707 5.707 11 C 0.134 3.866 12 C -0.107 4.107 13 C 0.084 3.916 14 O -0.571 6.571 15 C 0.123 3.877 16 N -0.616 5.616 17 C -0.304 4.304 18 H 0.085 0.915 19 C -0.018 4.018 20 N -0.930 5.930 21 Si 1.067 2.933 22 H -0.294 1.294 23 H -0.287 1.287 24 H -0.290 1.290 25 C 0.096 3.904 26 C -0.026 4.026 27 C -0.002 4.002 28 O -0.209 6.209 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.399 0.601 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.036 0.964 39 H 0.373 0.627 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.261 0.739 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.656 11.141 10.083 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.043 3.957 3 N -0.215 5.215 4 C -0.069 4.069 5 C -0.087 4.087 6 C -0.107 4.107 7 C -0.109 4.109 8 C 0.346 3.654 9 O -0.397 6.397 10 N -0.359 5.359 11 C 0.048 3.952 12 C -0.145 4.145 13 C 0.007 3.993 14 O -0.376 6.376 15 C -0.004 4.004 16 N -0.345 5.345 17 C -0.430 4.430 18 H 0.103 0.897 19 C -0.218 4.218 20 N -0.572 5.572 21 Si 0.900 3.100 22 H -0.222 1.222 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.030 4.030 26 C -0.046 4.046 27 C -0.052 4.052 28 O -0.100 6.100 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.234 0.766 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.218 0.782 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.059 9.187 8.416 28.884 hybrid contribution 0.696 1.691 1.384 2.294 sum -25.363 10.879 9.800 29.286 Atomic orbital electron populations 1.20464 0.80637 1.05780 1.05415 1.26606 0.96780 0.78267 0.94014 1.70640 1.00903 1.28898 1.21040 1.20032 0.92293 0.91234 1.03336 1.19943 0.88254 1.00562 0.99949 1.20925 0.98399 0.92851 0.98513 1.19799 0.93038 0.93500 1.04590 1.17938 0.83276 0.87213 0.76983 1.90787 1.87133 1.13091 1.48709 1.45905 1.05388 1.10082 1.74494 1.22528 0.80974 0.94674 0.97061 1.21453 1.05592 0.97454 0.90018 1.22107 0.98191 0.90247 0.88797 1.86529 1.95095 1.36738 1.19212 1.22633 0.90547 0.92907 0.94338 1.45747 1.00449 1.41631 1.46640 1.20094 0.80624 1.13094 1.29154 0.89745 1.25675 1.03104 0.95632 0.97354 1.70931 0.97198 1.44839 1.44226 0.83753 0.73851 0.76266 0.76141 1.22177 1.21490 1.21736 1.23185 0.86408 1.00105 0.93339 1.19914 0.86112 1.01337 0.97206 1.20072 0.83789 0.94349 1.07013 1.84506 1.15236 1.36094 1.74194 0.88085 0.88658 0.87499 0.83989 0.84003 0.76578 0.88633 0.88871 0.93663 0.94552 0.78157 0.92610 0.93977 0.92839 0.93537 0.92101 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.51 36.00 0.38 0.15 16 2 C 0.25 2.28 8.23 -13.05 -0.11 2.18 16 3 N -0.48 -5.38 11.33 -8.63 -0.10 -5.47 16 4 C 0.04 0.50 7.24 -84.63 -0.61 -0.11 16 5 C -0.07 -0.63 10.03 -39.68 -0.40 -1.03 16 6 C -0.09 -0.78 9.46 -39.59 -0.37 -1.15 16 7 C -0.11 -1.23 5.88 -104.92 -0.62 -1.85 16 8 C 0.56 8.05 7.56 -12.43 -0.09 7.96 16 9 O -0.52 -9.45 14.08 5.29 0.07 -9.38 16 10 N -0.71 -9.37 5.19 -48.30 -0.25 -9.62 16 11 C 0.13 2.33 0.82 -131.56 -0.11 2.22 16 12 C -0.11 -1.97 4.91 -26.73 -0.13 -2.10 16 13 C 0.08 1.25 6.89 37.16 0.26 1.50 16 14 O -0.57 -8.64 13.66 -35.23 -0.48 -9.12 16 15 C 0.12 2.23 7.81 -8.49 -0.07 2.17 16 16 N -0.62 -14.83 3.46 -184.53 -0.64 -15.47 16 17 C -0.30 -8.64 11.09 -15.06 -0.17 -8.81 16 18 H 0.08 2.50 8.05 -52.49 -0.42 2.08 16 19 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 20 N -0.93 -29.43 13.70 55.49 0.76 -28.67 16 21 Si 1.07 27.81 25.05 -169.99 -4.26 23.56 16 22 H -0.29 -7.76 7.11 56.52 0.40 -7.35 16 23 H -0.29 -7.28 6.51 56.52 0.37 -6.91 16 24 H -0.29 -7.13 6.53 56.52 0.37 -6.77 16 25 C 0.10 2.09 5.30 -8.35 -0.04 2.04 16 26 C -0.03 -0.31 9.60 -39.12 -0.38 -0.69 16 27 C 0.00 -0.03 7.42 -38.70 -0.29 -0.31 16 28 O -0.21 -2.29 10.77 3.70 0.04 -2.25 16 29 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.14 0.84 6.37 -52.49 -0.33 0.51 16 34 H 0.40 3.78 6.69 -40.82 -0.27 3.51 16 35 H 0.10 1.90 5.78 -51.93 -0.30 1.60 16 36 H 0.09 2.03 7.94 -51.93 -0.41 1.62 16 37 H 0.05 0.63 6.63 -51.93 -0.34 0.29 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.37 3.56 9.12 45.56 0.42 3.97 16 40 H 0.06 0.97 6.70 -51.93 -0.35 0.62 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 8.12 8.73 -40.82 -0.36 7.77 16 43 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 44 H 0.06 1.46 3.99 -51.93 -0.21 1.25 16 45 H 0.15 1.83 7.63 -52.49 -0.40 1.42 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -37.98 370.09 -6.92 -44.90 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.80 Total: 4.44 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.84 Total: 1.51 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.23 Total: -59.23 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.37 Total: -20.74 kcal Atomic # 14 Polarization: 27.81 SS G_CDS: -4.26 Total: 23.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.98 -6.92 -44.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725201426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.336 kcal (2) G-P(sol) polarization free energy of solvation -37.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds