Wall clock time and date at job start Wed Apr 1 2020 03:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30026 * 124.83687 * 2 1 4 4 C 1.35844 * 108.85362 * 179.97438 * 3 2 1 5 5 C 1.39840 * 133.62435 * 179.97438 * 4 3 2 6 6 C 1.36293 * 120.03726 * 179.74259 * 5 4 3 7 7 C 1.40086 * 120.41693 * 0.55799 * 6 5 4 8 8 C 1.47627 * 119.92975 * 179.71737 * 7 6 5 9 9 O 1.21583 * 120.00361 * 179.72814 * 8 7 6 10 10 N 1.34776 * 120.00024 * 359.72117 * 8 7 6 11 11 C 1.46496 * 120.00377 * 183.46002 * 10 8 7 12 12 C 1.53000 * 113.28106 * 306.25730 * 11 10 8 13 13 C 1.52997 * 109.46713 * 292.15229 * 12 11 10 14 14 O 1.42901 * 109.46805 * 184.81199 * 13 12 11 15 15 C 1.53498 * 114.20540 * 173.18724 * 11 10 8 16 16 N 1.47073 * 87.98489 * 220.14962 * 15 11 10 17 17 C 1.36936 * 136.06134 * 207.08655 * 16 15 11 18 18 H 1.07994 * 119.99480 * 354.42541 * 17 16 15 19 19 C 1.38810 * 120.00130 * 174.41864 * 17 16 15 20 20 N 1.31624 * 119.99819 * 182.15930 * 19 17 16 21 21 Si 1.86794 * 120.00161 * 2.43487 * 19 17 16 22 22 H 1.48503 * 109.47399 * 173.51219 * 21 19 17 23 23 H 1.48503 * 109.47243 * 293.51759 * 21 19 17 24 24 H 1.48507 * 109.47103 * 53.51256 * 21 19 17 25 25 C 1.47070 * 87.88565 * 27.34177 * 16 15 11 26 26 C 1.39440 * 120.14525 * 359.44325 * 7 6 5 27 27 C 1.38288 * 119.61440 * 0.27026 * 26 7 6 28 28 O 1.34141 * 124.84183 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47212 * 89.97871 * 1 2 3 30 30 H 1.08997 * 109.47039 * 209.97386 * 1 2 3 31 31 H 1.08996 * 109.47354 * 329.97866 * 1 2 3 32 32 H 1.08000 * 119.98103 * 0.04463 * 5 4 3 33 33 H 1.08001 * 119.78871 * 180.27134 * 6 5 4 34 34 H 0.97006 * 119.99804 * 3.46540 * 10 8 7 35 35 H 1.08997 * 109.47250 * 52.15504 * 12 11 10 36 36 H 1.08998 * 109.47001 * 172.15504 * 12 11 10 37 37 H 1.08999 * 109.47409 * 304.80805 * 13 12 11 38 38 H 1.08999 * 109.47760 * 64.81314 * 13 12 11 39 39 H 0.96707 * 114.00028 * 180.02562 * 14 13 12 40 40 H 1.08997 * 113.46934 * 105.37402 * 15 11 10 41 41 H 1.08995 * 113.52051 * 334.93528 * 15 11 10 42 42 H 0.96998 * 119.99874 * 5.30337 * 20 19 17 43 43 H 1.09004 * 113.46442 * 87.43643 * 25 16 15 44 44 H 1.08993 * 113.46922 * 217.88049 * 25 16 15 45 45 H 1.07996 * 120.18837 * 180.25365 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2497 1.0672 0.0000 4 6 3.5556 0.6932 0.0006 5 6 4.7619 1.4007 0.0004 6 6 5.9473 0.7281 0.0064 7 6 5.9680 -0.6726 0.0011 8 6 7.2582 -1.3902 0.0014 9 8 7.2777 -2.6058 0.0018 10 7 8.4144 -0.6977 0.0012 11 6 9.6935 -1.4077 -0.0751 12 6 9.8523 -2.4848 0.9999 13 6 9.9611 -1.8213 2.3743 14 8 10.2213 -2.8178 3.3649 15 6 10.9142 -0.4903 -0.2321 16 7 11.4631 -1.4699 -1.1819 17 6 12.7120 -1.8464 -1.5987 18 1 13.5814 -1.3046 -1.2568 19 6 12.8604 -2.9243 -2.4605 20 7 14.0634 -3.3127 -2.8275 21 14 11.3529 -3.8189 -3.1057 22 1 11.7680 -4.8205 -4.1204 23 1 10.6672 -4.5071 -1.9825 24 1 10.4247 -2.8403 -3.7270 25 6 10.0802 -1.8628 -1.4920 26 6 4.7727 -1.3907 0.0013 27 6 3.5678 -0.7120 0.0010 28 8 2.2733 -1.1009 0.0005 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5141 32 1 4.7541 2.4806 0.0004 33 1 6.8765 1.2785 0.0107 34 1 8.3996 0.2710 0.0516 35 1 8.9857 -3.1456 0.9830 36 1 10.7547 -3.0638 0.8036 37 1 10.7756 -1.0971 2.3648 38 1 9.0256 -1.3129 2.6075 39 1 10.3023 -2.4681 4.2629 40 1 11.5037 -0.3923 0.6794 41 1 10.6796 0.4716 -0.6878 42 1 14.8476 -2.8965 -2.4368 43 1 9.6248 -1.2628 -2.2799 44 1 9.9591 -2.9338 -1.6536 45 1 4.7879 -2.4705 0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725201426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:11 Heat of formation + Delta-G solvation = -5.155102 kcal Electronic energy + Delta-G solvation = -30040.779734 eV Core-core repulsion = 25833.187796 eV Total energy + Delta-G solvation = -4207.591938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.42098 -41.91413 -40.18353 -38.53289 -37.75139 -35.98785 -35.54180 -34.28464 -32.82007 -31.95195 -31.91871 -29.59114 -28.91442 -27.32676 -25.32860 -24.55699 -24.04849 -23.22048 -22.79911 -21.74770 -20.60354 -19.54887 -19.52003 -18.72924 -18.50456 -18.02886 -17.91370 -17.14990 -16.96109 -16.48618 -16.23429 -15.83198 -15.57439 -15.31822 -15.13613 -15.06296 -14.94761 -14.88182 -14.23372 -14.10161 -13.88650 -13.63778 -13.48243 -13.42300 -13.33040 -13.17769 -12.80615 -12.68487 -12.58485 -12.33872 -12.30784 -11.97602 -11.68414 -11.38752 -11.25487 -11.16868 -11.03417 -10.62129 -10.19928 -10.04619 -9.59234 -9.25812 -8.64324 -5.50809 -0.79286 0.02954 1.00767 1.26297 1.34376 1.41221 1.58997 1.78943 1.94978 2.45318 2.59544 2.72083 2.91381 3.03446 3.16978 3.30412 3.45909 3.55908 3.84963 3.88543 3.91337 4.04337 4.15773 4.20744 4.25351 4.35014 4.48994 4.52253 4.55711 4.57454 4.60655 4.65824 4.74759 4.80269 4.85347 4.90509 5.01185 5.02528 5.08991 5.13849 5.18238 5.22304 5.41391 5.53456 5.92347 6.42687 6.48187 6.66681 6.91674 7.13502 7.28216 8.19239 8.89520 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015906 B = 0.002700 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.973722 B =10367.093891 C =11000.246905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.261 3.739 3 N -0.511 5.511 4 C 0.034 3.966 5 C -0.067 4.067 6 C -0.069 4.069 7 C -0.114 4.114 8 C 0.563 3.437 9 O -0.564 6.564 10 N -0.688 5.688 11 C 0.161 3.839 12 C -0.107 4.107 13 C 0.092 3.908 14 O -0.596 6.596 15 C 0.130 3.870 16 N -0.649 5.649 17 C -0.277 4.277 18 H 0.065 0.935 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 1.102 2.898 22 H -0.303 1.303 23 H -0.288 1.288 24 H -0.268 1.268 25 C 0.083 3.917 26 C -0.036 4.036 27 C -0.026 4.026 28 O -0.222 6.222 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.422 0.578 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.397 0.603 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.250 0.750 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.579 14.416 11.288 33.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.051 3.949 3 N -0.242 5.242 4 C -0.078 4.078 5 C -0.086 4.086 6 C -0.089 4.089 7 C -0.118 4.118 8 C 0.351 3.649 9 O -0.443 6.443 10 N -0.342 5.342 11 C 0.074 3.926 12 C -0.146 4.146 13 C 0.015 3.985 14 O -0.404 6.404 15 C 0.005 3.995 16 N -0.378 5.378 17 C -0.405 4.405 18 H 0.082 0.918 19 C -0.270 4.270 20 N -0.616 5.616 21 Si 0.932 3.068 22 H -0.231 1.231 23 H -0.216 1.216 24 H -0.193 1.193 25 C -0.043 4.043 26 C -0.056 4.056 27 C -0.076 4.076 28 O -0.114 6.114 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.188 0.812 33 H 0.197 0.803 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -29.040 12.561 9.674 33.086 hybrid contribution 1.436 0.741 1.123 1.968 sum -27.603 13.302 10.797 32.488 Atomic orbital electron populations 1.20824 0.77003 1.07390 1.07046 1.27754 0.98422 0.77340 0.91354 1.70684 1.00926 1.29675 1.22897 1.20490 0.93329 0.91187 1.02796 1.20304 0.87399 1.01885 0.98992 1.21230 0.99882 0.91378 0.96396 1.19540 0.91112 0.94603 1.06530 1.18286 0.84155 0.86731 0.75710 1.90786 1.87731 1.15247 1.50557 1.45531 1.03490 1.11071 1.74133 1.21803 0.82784 0.94147 0.93915 1.21362 1.02582 0.97600 0.93032 1.22004 1.00028 0.89774 0.86720 1.86470 1.95213 1.37765 1.20998 1.22866 0.89940 0.93096 0.93624 1.45738 0.99925 1.43829 1.48279 1.19975 0.82282 1.11463 1.26753 0.91767 1.26618 1.04201 0.97203 0.99002 1.70998 0.97610 1.46539 1.46434 0.83275 0.72121 0.75825 0.75589 1.23102 1.21620 1.19337 1.23390 0.85463 0.98863 0.96624 1.19877 0.86866 1.00953 0.97870 1.20151 0.84067 0.94906 1.08457 1.84512 1.15214 1.37154 1.74534 0.86174 0.86829 0.85998 0.81245 0.80299 0.73753 0.90457 0.93193 0.92214 0.91965 0.75280 0.91325 0.90001 0.94029 0.92167 0.94776 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.51 71.23 0.75 0.46 16 2 C 0.26 4.25 8.23 88.37 0.73 4.98 16 3 N -0.51 -10.38 11.33 -296.04 -3.35 -13.73 16 4 C 0.03 0.72 7.24 39.47 0.29 1.01 16 5 C -0.07 -1.01 10.03 22.20 0.22 -0.79 16 6 C -0.07 -0.96 9.46 22.26 0.21 -0.75 16 7 C -0.11 -2.42 5.88 -20.06 -0.12 -2.54 16 8 C 0.56 15.11 7.56 86.72 0.66 15.77 16 9 O -0.56 -20.43 14.08 -3.98 -0.06 -20.49 16 10 N -0.69 -15.84 5.19 -424.98 -2.20 -18.04 16 11 C 0.16 5.25 0.82 4.17 0.00 5.25 16 12 C -0.11 -3.89 4.91 30.59 0.15 -3.74 16 13 C 0.09 2.50 6.89 71.98 0.50 3.00 16 14 O -0.60 -17.04 13.66 -148.98 -2.03 -19.07 16 15 C 0.13 4.29 7.81 83.19 0.65 4.93 16 16 N -0.65 -30.57 3.46 -737.73 -2.56 -33.13 16 17 C -0.28 -15.94 11.09 84.03 0.93 -15.01 16 18 H 0.06 3.89 8.05 -2.91 -0.02 3.86 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 20 N -0.97 -63.59 13.70 21.65 0.30 -63.29 16 21 Si 1.10 57.95 25.05 68.60 1.72 59.67 16 22 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 23 H -0.29 -14.96 6.51 99.48 0.65 -14.31 16 24 H -0.27 -12.84 6.53 99.48 0.65 -12.19 16 25 C 0.08 3.49 5.30 83.28 0.44 3.93 16 26 C -0.04 -0.85 9.60 22.57 0.22 -0.63 16 27 C -0.03 -0.60 7.42 22.84 0.17 -0.43 16 28 O -0.22 -4.71 10.77 -9.67 -0.10 -4.81 16 29 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.18 1.02 6.37 -2.91 -0.02 1.01 16 34 H 0.42 5.71 6.69 -92.70 -0.62 5.09 16 35 H 0.08 3.10 5.78 -2.39 -0.01 3.09 16 36 H 0.05 2.23 7.94 -2.39 -0.02 2.21 16 37 H 0.06 1.45 6.63 -2.39 -0.02 1.44 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.40 6.62 9.12 -74.05 -0.68 5.94 16 40 H 0.07 2.13 6.70 -2.39 -0.02 2.11 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 43 H 0.06 2.40 8.07 -2.38 -0.02 2.38 16 44 H 0.03 1.65 3.99 -2.39 -0.01 1.64 16 45 H 0.14 3.51 7.63 -2.91 -0.02 3.49 16 Total: -1.00 -88.05 370.09 -2.42 -90.47 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -0.38 Total: 11.26 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 6.26 Total: 11.17 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -7.82 Total: -128.19 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -2.20 Total: -44.38 kcal Atomic # 14 Polarization: 57.95 SS G_CDS: 1.72 Total: 59.67 kcal Total: -88.05 -2.42 -90.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725201426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.315 kcal (2) G-P(sol) polarization free energy of solvation -88.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds