Wall clock time and date at job start Wed Apr 1 2020 03:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35272 * 126.71142 * 2 1 4 4 C 1.41932 * 103.96291 * 180.11022 * 3 2 1 5 5 O 1.35702 * 126.88161 * 179.91092 * 4 3 2 6 6 C 1.42902 * 117.00363 * 179.70709 * 5 4 3 7 7 C 1.50698 * 109.47274 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99906 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00058 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00112 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47167 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46658 * 65.00069 * 11 10 9 13 13 N 1.46506 * 109.47286 * 305.00554 * 11 10 9 14 14 C 1.36931 * 119.99939 * 154.99859 * 13 11 10 15 15 H 1.08000 * 120.00644 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99715 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99673 * 179.72262 * 16 14 13 18 18 Si 1.86795 * 120.00115 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47274 * 89.99913 * 18 16 14 20 20 H 1.48505 * 109.47015 * 209.99478 * 18 16 14 21 21 H 1.48498 * 109.47362 * 329.99904 * 18 16 14 22 22 C 1.50695 * 109.47337 * 185.00303 * 11 10 9 23 23 C 1.38231 * 120.00281 * 79.72497 * 22 11 10 24 24 C 1.38236 * 120.00177 * 179.79012 * 23 22 11 25 25 C 1.38238 * 119.99719 * 0.44238 * 24 23 22 26 26 C 1.38228 * 120.00163 * 359.81322 * 25 24 23 27 27 C 1.38234 * 119.99978 * 359.97438 * 26 25 24 28 28 N 1.30618 * 106.23637 * 359.64387 * 4 3 2 29 29 O 1.20906 * 111.50049 * 0.22784 * 28 4 3 30 30 H 1.08993 * 109.47182 * 180.26500 * 1 2 3 31 31 H 1.09006 * 109.47160 * 300.26560 * 1 2 3 32 32 H 1.08998 * 109.47043 * 60.25841 * 1 2 3 33 33 H 1.08000 * 128.01726 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.46690 * 60.00006 * 6 5 4 35 35 H 1.08994 * 109.46590 * 300.00055 * 6 5 4 36 36 H 0.96997 * 119.99690 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.46839 * 60.00083 * 10 9 7 38 38 H 1.08995 * 109.46942 * 300.00129 * 10 9 7 39 39 H 0.97000 * 119.99307 * 334.99653 * 13 11 10 40 40 H 0.97000 * 120.00043 * 180.02562 * 17 16 14 41 41 H 1.08000 * 119.99526 * 0.02562 * 23 22 11 42 42 H 1.07999 * 119.99926 * 180.28022 * 24 23 22 43 43 H 1.07999 * 119.99347 * 179.83422 * 25 24 23 44 44 H 1.07998 * 120.00292 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.00271 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 -0.0026 5 8 4.7953 1.2217 -0.0054 6 6 5.9989 0.4512 -0.0012 7 6 7.1880 1.3769 -0.0057 8 8 7.0212 2.5782 -0.0113 9 7 8.4367 0.8699 -0.0034 10 6 9.5927 1.7699 -0.0083 11 6 10.8813 0.9450 -0.0037 12 1 10.9531 0.3782 -0.9320 13 7 10.8653 0.0205 1.1328 14 6 11.6007 -1.1336 1.0869 15 1 12.1922 -1.3628 0.2128 16 6 11.5860 -2.0092 2.1639 17 7 12.2886 -3.1213 2.1176 18 14 10.5625 -1.6134 3.6755 19 1 9.2002 -2.1820 3.5137 20 1 11.2055 -2.2034 4.8771 21 1 10.4680 -0.1403 3.8375 22 6 12.0675 1.8667 0.1152 23 6 12.4248 2.3778 1.3488 24 6 13.5156 3.2199 1.4586 25 6 14.2435 3.5582 0.3331 26 6 13.8829 3.0514 -0.9014 27 6 12.7949 2.2058 -1.0104 28 7 3.4764 -0.7622 0.0039 29 8 2.3085 -1.0749 0.0054 30 1 -0.3633 -1.0276 0.0048 31 1 -0.3634 0.5180 0.8876 32 1 -0.3633 0.5098 -0.8923 33 1 2.0311 2.1263 -0.0004 34 1 6.0281 -0.1815 -0.8882 35 1 6.0273 -0.1732 0.8917 36 1 8.5700 -0.0908 0.0015 37 1 9.5640 2.4031 0.8785 38 1 9.5635 2.3939 -0.9014 39 1 10.3338 0.2262 1.9177 40 1 12.2780 -3.7334 2.8700 41 1 11.8541 2.1160 2.2276 42 1 13.7975 3.6155 2.4231 43 1 15.0940 4.2183 0.4185 44 1 14.4518 3.3154 -1.7806 45 1 12.5134 1.8095 -1.9748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732021022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:06 Heat of formation + Delta-G solvation = 38.437119 kcal Electronic energy + Delta-G solvation = -28903.657890 eV Core-core repulsion = 24697.956253 eV Total energy + Delta-G solvation = -4205.701637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.12820 -40.05454 -39.08102 -38.38955 -36.10871 -34.12479 -33.80894 -32.77572 -32.13477 -30.54293 -30.06539 -29.46216 -28.18627 -27.07003 -23.71901 -23.64528 -22.79789 -22.01536 -21.58160 -20.44438 -20.02130 -18.26023 -18.08458 -17.96617 -17.09975 -16.94487 -16.35938 -16.34368 -15.72339 -15.34645 -14.79300 -14.52927 -14.44696 -14.23803 -14.19580 -13.86455 -13.67371 -13.45827 -13.18813 -13.00665 -12.92910 -12.88480 -12.78794 -12.56907 -12.25542 -11.87211 -11.44349 -11.34900 -11.10522 -10.95368 -10.82957 -10.60297 -10.26075 -9.89354 -9.79144 -9.71747 -9.42090 -9.16791 -8.97475 -8.49545 -8.30045 -7.49339 -5.90104 -3.29326 1.15080 1.76053 1.83332 2.03929 2.19281 2.56102 2.83628 3.26069 3.28882 3.36467 3.46598 3.95253 4.20311 4.45557 4.49776 4.64008 4.67564 4.87416 4.89329 4.96200 4.96532 4.98316 5.22068 5.23731 5.28661 5.32699 5.35793 5.37321 5.49007 5.60872 5.62176 5.63826 5.90947 5.96847 6.01362 6.25145 6.36244 6.50068 6.51401 6.75193 6.85306 6.90452 7.14057 7.42349 7.55429 7.82457 8.01045 8.20019 8.27319 9.02777 9.74473 9.91500 11.27492 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.002547 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.576483 B =10992.601464 C =12815.056836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.234 4.234 4 C 0.213 3.787 5 O -0.256 6.256 6 C 0.044 3.956 7 C 0.516 3.484 8 O -0.528 6.528 9 N -0.711 5.711 10 C 0.120 3.880 11 C 0.204 3.796 12 H 0.076 0.924 13 N -0.739 5.739 14 C -0.249 4.249 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.927 5.927 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.081 4.081 23 C -0.088 4.088 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.116 4.116 28 N -0.409 5.409 29 O 0.100 5.900 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.178 0.822 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.413 0.587 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.363 0.637 40 H 0.261 0.739 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 9.681 -5.891 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.161 6.161 6 C -0.035 4.035 7 C 0.300 3.700 8 O -0.404 6.404 9 N -0.365 5.365 10 C -0.004 4.004 11 C 0.094 3.906 12 H 0.094 0.906 13 N -0.382 5.382 14 C -0.378 4.378 15 H 0.110 0.890 16 C -0.183 4.183 17 N -0.573 5.573 18 Si 0.708 3.292 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.085 4.085 23 C -0.106 4.106 24 C -0.144 4.144 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.135 4.135 28 N -0.136 5.136 29 O 0.039 5.961 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.196 0.804 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.250 0.750 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.247 9.596 -5.947 19.784 hybrid contribution -0.427 0.259 1.328 1.419 sum -16.674 9.855 -4.618 19.911 Atomic orbital electron populations 1.20379 0.83522 1.04950 1.04361 1.24357 0.96499 0.85641 1.00988 1.21778 0.88297 1.01708 1.13761 1.22067 0.88478 0.88019 0.99922 1.86263 1.10007 1.30815 1.89051 1.22516 0.82162 0.93680 1.05135 1.19829 0.83913 0.88842 0.77439 1.90737 1.85752 1.15084 1.48799 1.45814 1.04468 1.11884 1.74342 1.21698 0.83967 0.92235 1.02526 1.19444 0.88687 0.88977 0.93502 0.90602 1.42846 1.56866 1.22239 1.16209 1.19005 1.21674 0.94252 1.02895 0.88966 1.24645 0.99426 0.96593 0.97669 1.69686 1.44068 1.11706 1.31862 0.86673 0.80520 0.77649 0.84358 1.20946 1.21584 1.20363 1.20809 0.98443 0.96138 0.93108 1.20927 0.96685 0.95471 0.97540 1.21087 0.96180 0.99026 0.98143 1.20999 0.99929 1.00965 0.93064 1.21006 0.97596 0.98637 0.97263 1.21008 0.95923 0.98386 0.98138 1.74202 0.97841 1.14224 1.27358 1.84808 1.10311 1.31983 1.68967 0.89586 0.88891 0.88890 0.80413 0.88377 0.88348 0.75022 0.91316 0.90731 0.80319 0.92864 0.86452 0.86801 0.86927 0.86787 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.00 0.38 0.12 16 2 C -0.01 -0.09 7.48 -35.37 -0.26 -0.36 16 3 C -0.23 -2.33 11.10 -39.23 -0.44 -2.77 16 4 C 0.21 2.85 8.01 -16.65 -0.13 2.72 16 5 O -0.26 -3.84 9.74 -38.72 -0.38 -4.22 16 6 C 0.04 0.59 6.14 36.00 0.22 0.82 16 7 C 0.52 8.07 7.91 -10.99 -0.09 7.98 16 8 O -0.53 -10.04 16.50 -14.35 -0.24 -10.27 16 9 N -0.71 -10.57 5.39 -60.30 -0.32 -10.89 16 10 C 0.12 1.85 5.21 -4.04 -0.02 1.83 16 11 C 0.20 3.52 2.64 -69.08 -0.18 3.34 16 12 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 13 N -0.74 -15.45 3.62 -54.55 -0.20 -15.64 16 14 C -0.25 -6.40 10.40 -15.06 -0.16 -6.56 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 16 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 17 N -0.93 -27.84 13.97 55.49 0.78 -27.06 16 18 Si 0.88 20.99 27.74 -169.99 -4.71 16.28 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 22 C -0.08 -1.40 4.92 -104.63 -0.51 -1.92 16 23 C -0.09 -1.54 9.32 -39.58 -0.37 -1.91 16 24 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 26 C -0.13 -1.81 10.05 -39.59 -0.40 -2.21 16 27 C -0.12 -1.79 9.67 -39.58 -0.38 -2.17 16 28 N -0.41 -5.52 11.54 30.38 0.35 -5.17 16 29 O 0.10 1.12 11.19 17.07 0.19 1.31 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.41 5.94 8.14 -40.82 -0.33 5.61 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.36 7.64 5.66 -40.82 -0.23 7.41 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.12 2.13 7.73 -52.49 -0.41 1.72 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -34.01 392.39 -7.90 -41.91 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.04 Total: 13.30 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.24 Total: -5.45 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.60 Total: -58.77 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.42 Total: -13.18 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.71 Total: 16.28 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.01 -7.90 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732021022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.352 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds