Wall clock time and date at job start Wed Apr 1 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35272 * 126.71142 * 2 1 4 4 C 1.41932 * 103.96291 * 180.11022 * 3 2 1 5 5 O 1.35702 * 126.88161 * 179.91092 * 4 3 2 6 6 C 1.42902 * 117.00363 * 179.70709 * 5 4 3 7 7 C 1.50698 * 109.47274 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99906 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00058 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00112 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47167 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46658 * 65.00069 * 11 10 9 13 13 N 1.46506 * 109.47286 * 305.00554 * 11 10 9 14 14 C 1.36931 * 119.99939 * 154.99859 * 13 11 10 15 15 H 1.08000 * 120.00644 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99715 * 179.97438 * 14 13 11 17 17 N 1.31621 * 119.99673 * 179.72262 * 16 14 13 18 18 Si 1.86795 * 120.00115 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47274 * 89.99913 * 18 16 14 20 20 H 1.48505 * 109.47015 * 209.99478 * 18 16 14 21 21 H 1.48498 * 109.47362 * 329.99904 * 18 16 14 22 22 C 1.50695 * 109.47337 * 185.00303 * 11 10 9 23 23 C 1.38231 * 120.00281 * 79.72497 * 22 11 10 24 24 C 1.38236 * 120.00177 * 179.79012 * 23 22 11 25 25 C 1.38238 * 119.99719 * 0.44238 * 24 23 22 26 26 C 1.38228 * 120.00163 * 359.81322 * 25 24 23 27 27 C 1.38234 * 119.99978 * 359.97438 * 26 25 24 28 28 N 1.30618 * 106.23637 * 359.64387 * 4 3 2 29 29 O 1.20906 * 111.50049 * 0.22784 * 28 4 3 30 30 H 1.08993 * 109.47182 * 180.26500 * 1 2 3 31 31 H 1.09006 * 109.47160 * 300.26560 * 1 2 3 32 32 H 1.08998 * 109.47043 * 60.25841 * 1 2 3 33 33 H 1.08000 * 128.01726 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.46690 * 60.00006 * 6 5 4 35 35 H 1.08994 * 109.46590 * 300.00055 * 6 5 4 36 36 H 0.96997 * 119.99690 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.46839 * 60.00083 * 10 9 7 38 38 H 1.08995 * 109.46942 * 300.00129 * 10 9 7 39 39 H 0.97000 * 119.99307 * 334.99653 * 13 11 10 40 40 H 0.97000 * 120.00043 * 180.02562 * 17 16 14 41 41 H 1.08000 * 119.99526 * 0.02562 * 23 22 11 42 42 H 1.07999 * 119.99926 * 180.28022 * 24 23 22 43 43 H 1.07999 * 119.99347 * 179.83422 * 25 24 23 44 44 H 1.07998 * 120.00292 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.00271 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 -0.0026 5 8 4.7953 1.2217 -0.0054 6 6 5.9989 0.4512 -0.0012 7 6 7.1880 1.3769 -0.0057 8 8 7.0212 2.5782 -0.0113 9 7 8.4367 0.8699 -0.0034 10 6 9.5927 1.7699 -0.0083 11 6 10.8813 0.9450 -0.0037 12 1 10.9531 0.3782 -0.9320 13 7 10.8653 0.0205 1.1328 14 6 11.6007 -1.1336 1.0869 15 1 12.1922 -1.3628 0.2128 16 6 11.5860 -2.0092 2.1639 17 7 12.2886 -3.1213 2.1176 18 14 10.5625 -1.6134 3.6755 19 1 9.2002 -2.1820 3.5137 20 1 11.2055 -2.2034 4.8771 21 1 10.4680 -0.1403 3.8375 22 6 12.0675 1.8667 0.1152 23 6 12.4248 2.3778 1.3488 24 6 13.5156 3.2199 1.4586 25 6 14.2435 3.5582 0.3331 26 6 13.8829 3.0514 -0.9014 27 6 12.7949 2.2058 -1.0104 28 7 3.4764 -0.7622 0.0039 29 8 2.3085 -1.0749 0.0054 30 1 -0.3633 -1.0276 0.0048 31 1 -0.3634 0.5180 0.8876 32 1 -0.3633 0.5098 -0.8923 33 1 2.0311 2.1263 -0.0004 34 1 6.0281 -0.1815 -0.8882 35 1 6.0273 -0.1732 0.8917 36 1 8.5700 -0.0908 0.0015 37 1 9.5640 2.4031 0.8785 38 1 9.5635 2.3939 -0.9014 39 1 10.3338 0.2262 1.9177 40 1 12.2780 -3.7334 2.8700 41 1 11.8541 2.1160 2.2276 42 1 13.7975 3.6155 2.4231 43 1 15.0940 4.2183 0.4185 44 1 14.4518 3.3154 -1.7806 45 1 12.5134 1.8095 -1.9748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732021022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:05 Heat of formation + Delta-G solvation = 15.288808 kcal Electronic energy + Delta-G solvation = -28904.661677 eV Core-core repulsion = 24697.956253 eV Total energy + Delta-G solvation = -4206.705424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.98513 -41.28466 -40.30535 -39.53189 -37.56130 -35.38396 -34.80150 -33.88581 -33.58567 -31.91559 -31.55805 -30.62798 -28.84962 -28.25503 -25.41116 -24.51235 -24.22682 -23.25640 -22.53417 -21.70418 -21.34024 -19.91380 -19.10188 -18.97397 -18.16635 -18.00648 -17.63325 -17.47107 -16.95200 -16.86724 -16.06516 -16.02394 -15.68176 -15.57442 -14.98147 -14.90799 -14.82241 -14.43877 -14.35471 -14.17440 -14.12556 -14.07047 -13.92128 -13.55325 -13.24519 -13.16547 -12.96259 -12.82763 -12.50963 -12.26478 -12.15508 -12.01848 -11.83488 -11.72767 -11.24144 -11.04021 -10.53618 -10.32359 -10.26205 -9.70782 -9.63015 -9.33723 -8.02938 -5.38058 0.42518 0.54329 0.61771 1.15018 1.16755 1.31268 1.35108 1.36343 1.43368 2.14536 2.39950 2.44814 2.97348 3.08400 3.28392 3.40882 3.52232 3.80674 3.86072 3.90530 3.93550 3.96634 4.09166 4.15278 4.28739 4.29954 4.36603 4.37385 4.62074 4.74025 4.76794 4.77901 4.79073 4.88927 4.95353 5.14570 5.26274 5.26697 5.27027 5.66819 5.69828 5.74607 5.76605 5.86364 6.20107 6.23256 6.31343 6.94656 7.03747 7.20218 7.75828 7.95224 9.18243 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.002547 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.576483 B =10992.601464 C =12815.056836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.249 4.249 4 C 0.187 3.813 5 O -0.277 6.277 6 C 0.049 3.951 7 C 0.520 3.480 8 O -0.563 6.563 9 N -0.705 5.705 10 C 0.130 3.870 11 C 0.209 3.791 12 H 0.077 0.923 13 N -0.737 5.737 14 C -0.216 4.216 15 H 0.062 0.938 16 C -0.052 4.052 17 N -0.979 5.979 18 Si 0.940 3.060 19 H -0.276 1.276 20 H -0.302 1.302 21 H -0.259 1.259 22 C -0.103 4.103 23 C -0.113 4.113 24 C -0.136 4.136 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.126 4.126 28 N -0.435 5.435 29 O 0.092 5.908 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.198 0.802 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.417 0.583 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.365 0.635 40 H 0.256 0.744 41 H 0.102 0.898 42 H 0.131 0.869 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.716 11.377 -6.403 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.270 4.270 4 C -0.010 4.010 5 O -0.182 6.182 6 C -0.030 4.030 7 C 0.305 3.695 8 O -0.442 6.442 9 N -0.359 5.359 10 C 0.006 3.994 11 C 0.100 3.900 12 H 0.095 0.905 13 N -0.380 5.380 14 C -0.347 4.347 15 H 0.080 0.920 16 C -0.244 4.244 17 N -0.630 5.630 18 Si 0.768 3.232 19 H -0.202 1.202 20 H -0.230 1.230 21 H -0.184 1.184 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.144 4.144 28 N -0.163 5.163 29 O 0.032 5.968 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.216 0.784 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.254 0.746 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.198 0.802 40 H 0.065 0.935 41 H 0.121 0.879 42 H 0.149 0.851 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.794 11.331 -6.487 22.070 hybrid contribution 0.040 -0.185 1.359 1.372 sum -17.754 11.145 -5.128 21.580 Atomic orbital electron populations 1.20686 0.79743 1.06424 1.06212 1.25207 0.98156 0.84096 0.98025 1.22159 0.87044 1.03236 1.14591 1.22508 0.88814 0.88589 1.01079 1.86211 1.10732 1.31758 1.89548 1.22482 0.81254 0.93026 1.06220 1.20129 0.84399 0.88560 0.76366 1.90715 1.86230 1.16650 1.50590 1.45777 1.04311 1.11955 1.73829 1.21564 0.83131 0.91904 1.02776 1.19514 0.89934 0.88624 0.91909 0.90545 1.42736 1.56224 1.21629 1.17406 1.18884 1.19729 0.94996 1.01100 0.91985 1.25293 1.01435 0.96789 1.00834 1.69852 1.46989 1.13358 1.32777 0.85655 0.78971 0.78318 0.80237 1.20166 1.22972 1.18397 1.20746 0.98778 0.97132 0.93945 1.20979 0.97948 0.97077 0.97187 1.21366 0.95679 0.98595 0.99710 1.21411 1.00257 1.00633 0.92510 1.21416 0.97002 0.97469 0.98537 1.21280 0.96178 0.98694 0.98268 1.74181 0.99135 1.14540 1.28435 1.84757 1.10059 1.33073 1.68935 0.88338 0.86932 0.86782 0.78446 0.86744 0.87676 0.74614 0.92052 0.89476 0.80153 0.93457 0.87942 0.85095 0.83832 0.83698 0.84901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 71.23 0.74 0.48 16 2 C 0.01 0.13 7.48 25.00 0.19 0.32 16 3 C -0.25 -4.66 11.10 22.50 0.25 -4.41 16 4 C 0.19 4.97 8.01 85.79 0.69 5.66 16 5 O -0.28 -8.34 9.74 -71.19 -0.69 -9.03 16 6 C 0.05 1.31 6.14 71.24 0.44 1.75 16 7 C 0.52 16.15 7.91 87.66 0.69 16.85 16 8 O -0.56 -21.46 16.50 16.00 0.26 -21.20 16 9 N -0.71 -20.63 5.39 -463.06 -2.49 -23.12 16 10 C 0.13 3.96 5.21 86.38 0.45 4.41 16 11 C 0.21 7.14 2.64 44.24 0.12 7.26 16 12 H 0.08 2.61 7.94 -2.38 -0.02 2.59 16 13 N -0.74 -30.76 3.62 -326.50 -1.18 -31.94 16 14 C -0.22 -11.30 10.40 84.04 0.87 -10.43 16 15 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 16 C -0.05 -2.88 5.50 84.86 0.47 -2.42 16 17 N -0.98 -60.62 13.97 21.65 0.30 -60.32 16 18 Si 0.94 43.93 27.74 68.60 1.90 45.83 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 21 H -0.26 -11.14 6.52 99.48 0.65 -10.49 16 22 C -0.10 -3.48 4.92 -19.87 -0.10 -3.58 16 23 C -0.11 -3.93 9.32 22.27 0.21 -3.72 16 24 C -0.14 -4.01 10.05 22.27 0.22 -3.79 16 25 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 26 C -0.13 -3.25 10.05 22.27 0.22 -3.02 16 27 C -0.13 -3.69 9.67 22.27 0.22 -3.47 16 28 N -0.43 -11.65 11.54 -172.61 -1.99 -13.64 16 29 O 0.09 1.98 11.19 71.27 0.80 2.78 16 30 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 32 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.42 11.76 8.14 -92.71 -0.75 11.00 16 37 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.36 15.13 5.66 -92.71 -0.52 14.60 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 41 H 0.10 3.75 7.73 -2.91 -0.02 3.73 16 42 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 44 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 45 H 0.13 3.36 8.04 -2.91 -0.02 3.33 16 Total: -1.00 -75.94 392.39 2.50 -73.44 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -0.31 Total: 38.46 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 5.90 Total: -1.25 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -5.36 Total: -129.03 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: 0.37 Total: -27.45 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.90 Total: 45.83 kcal Total: -75.94 2.50 -73.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732021022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.729 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds