Wall clock time and date at job start Wed Apr 1 2020 03:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 110.89106 * 2 1 4 4 C 1.34777 * 119.99525 * 300.69820 * 3 2 1 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 3 2 7 7 C 1.53004 * 109.47208 * 180.27843 * 6 4 3 8 8 C 1.53006 * 108.57879 * 67.00031 * 7 6 4 9 9 C 1.53196 * 108.64758 * 185.00047 * 7 6 4 10 10 C 1.55552 * 106.24158 * 148.66136 * 9 7 6 11 11 S 1.83904 * 99.64012 * 323.01041 * 10 9 7 12 12 O 1.42098 * 111.46672 * 144.09378 * 11 10 9 13 13 O 1.42109 * 111.46392 * 283.93940 * 11 10 9 14 14 N 1.46453 * 108.64599 * 309.17147 * 7 6 4 15 15 C 1.55160 * 111.00482 * 123.88224 * 2 1 3 16 16 C 1.54319 * 102.94699 * 153.60990 * 15 2 1 17 17 N 1.47026 * 107.26988 * 337.80510 * 16 15 2 18 18 C 1.36932 * 125.65104 * 178.97317 * 17 16 15 19 19 H 1.07997 * 120.00289 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99815 * 359.97438 * 18 17 16 21 21 N 1.31613 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46951 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47196 * 119.99578 * 22 20 18 25 25 H 1.48496 * 109.46820 * 239.99696 * 22 20 18 26 26 C 1.47525 * 108.71421 * 358.94363 * 17 16 15 27 27 H 1.08998 * 109.47165 * 59.29650 * 1 2 3 28 28 H 1.09000 * 109.47753 * 179.30437 * 1 2 3 29 29 H 1.09007 * 109.46902 * 299.30081 * 1 2 3 30 30 H 0.97000 * 120.00580 * 120.70566 * 3 2 1 31 31 H 1.09009 * 109.47352 * 300.27556 * 6 4 3 32 32 H 1.08998 * 109.47585 * 60.27844 * 6 4 3 33 33 H 1.08998 * 109.46675 * 60.70351 * 8 7 6 34 34 H 1.09004 * 109.46909 * 180.70342 * 8 7 6 35 35 H 1.08995 * 109.47027 * 300.69913 * 8 7 6 36 36 H 1.09010 * 110.09900 * 267.85055 * 9 7 6 37 37 H 1.08994 * 110.10370 * 29.46190 * 9 7 6 38 38 H 1.09002 * 111.37757 * 80.61156 * 10 9 7 39 39 H 1.09000 * 111.37090 * 205.35656 * 10 9 7 40 40 H 0.97001 * 126.08351 * 57.14807 * 14 7 6 41 41 H 1.09006 * 110.71605 * 271.97612 * 15 2 1 42 42 H 1.09001 * 110.71860 * 35.06784 * 15 2 1 43 43 H 1.09001 * 109.88411 * 97.21904 * 16 15 2 44 44 H 1.08998 * 109.88650 * 218.23525 * 16 15 2 45 45 H 0.97008 * 120.00285 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.37002 * 265.30275 * 26 17 16 47 47 H 1.09005 * 110.41172 * 142.95019 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7359 2.2107 -1.0037 5 8 1.0183 1.8355 -1.9066 6 6 2.2683 3.6205 -1.0005 7 6 1.7575 4.3613 -2.2380 8 6 0.2427 4.5356 -2.1113 9 6 2.4081 5.7475 -2.2824 10 6 2.5492 6.1140 -3.7875 11 16 2.9619 4.4571 -4.4705 12 8 2.3816 4.2642 -5.7532 13 8 4.3103 4.1026 -4.1959 14 7 2.0339 3.5431 -3.4208 15 6 2.0861 -0.8075 1.2025 16 6 3.4678 -1.2732 0.6969 17 7 3.4279 -1.2424 -0.7725 18 6 4.4652 -1.5657 -1.6059 19 1 4.3348 -1.5111 -2.6766 20 6 5.6844 -1.9635 -1.0746 21 7 5.8435 -2.0295 0.2302 22 14 7.0992 -2.4052 -2.2116 23 1 6.6663 -2.2506 -3.6237 24 1 8.2488 -1.5040 -1.9444 25 1 7.5070 -3.8126 -1.9706 26 6 2.0852 -0.8063 -1.2006 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3634 -1.0275 -0.0125 29 1 -0.3633 0.5030 0.8963 30 1 2.6261 1.6689 0.7222 31 1 1.9274 4.1356 -0.1023 32 1 3.3579 3.5975 -1.0148 33 1 0.0179 5.1226 -1.2208 34 1 -0.1386 5.0515 -2.9925 35 1 -0.2301 3.5569 -2.0303 36 1 1.7732 6.4757 -1.7775 37 1 3.3903 5.7156 -1.8109 38 1 1.6102 6.4888 -4.1949 39 1 3.3601 6.8243 -3.9491 40 1 1.7328 2.6330 -3.5690 41 1 2.1915 -0.1693 2.0799 42 1 1.4454 -1.6613 1.4231 43 1 4.2425 -0.5984 1.0609 44 1 3.6669 -2.2873 1.0434 45 1 6.6956 -2.3072 0.6015 46 1 1.4521 -1.6704 -1.4026 47 1 2.1553 -0.1715 -2.0839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733411998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:43 Heat of formation + Delta-G solvation = -66.221683 kcal Electronic energy + Delta-G solvation = -30597.511480 eV Core-core repulsion = 26522.715448 eV Total energy + Delta-G solvation = -4074.796032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.37620 -38.58749 -37.07594 -36.79068 -35.83323 -33.94398 -32.10616 -31.88022 -30.71350 -29.87395 -28.69714 -27.73961 -25.66156 -24.63151 -23.62078 -21.34896 -20.45003 -19.98461 -19.54414 -19.04094 -17.51102 -17.14823 -16.65227 -16.36958 -15.89039 -15.55814 -15.28108 -14.87201 -14.71457 -14.55740 -13.92223 -13.74257 -13.50377 -13.47538 -13.23270 -12.97720 -12.73392 -12.57237 -12.26649 -12.07518 -11.95921 -11.93312 -11.90176 -11.74743 -11.69471 -11.62668 -11.33165 -11.01212 -10.86117 -10.84997 -10.66278 -10.36646 -10.35148 -10.01903 -9.97862 -9.63407 -9.41963 -9.19193 -8.64573 -8.51577 -6.77447 -5.67908 -2.99574 0.21555 2.60476 2.91337 3.38819 3.44695 3.51128 3.53845 3.58055 3.77476 4.06625 4.27647 4.44720 4.55206 4.70834 4.90005 4.97661 5.10449 5.13756 5.24204 5.29166 5.37902 5.39821 5.43043 5.49999 5.57414 5.62433 5.72367 5.77139 5.96459 6.00664 6.11598 6.14379 6.29036 6.34491 6.39769 6.53020 6.66433 6.80701 7.10278 7.44255 7.56850 7.57350 7.83213 7.89054 8.28780 8.56989 9.26929 9.86868 10.51988 11.44208 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.004263 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.843306 B = 6566.821869 C = 8307.627495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.699 5.699 4 C 0.526 3.474 5 O -0.540 6.540 6 C -0.151 4.151 7 C 0.160 3.840 8 C -0.161 4.161 9 C -0.118 4.118 10 C -0.596 4.596 11 S 2.561 3.439 12 O -0.965 6.965 13 O -0.949 6.949 14 N -1.073 6.073 15 C -0.147 4.147 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.909 3.091 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.133 3.867 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.398 0.602 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.447 0.553 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.250 0.750 46 H 0.024 0.976 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 18.691 1.595 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 N -0.348 5.348 4 C 0.313 3.687 5 O -0.419 6.419 6 C -0.193 4.193 7 C 0.069 3.931 8 C -0.220 4.220 9 C -0.157 4.157 10 C -0.726 4.726 11 S 2.654 3.346 12 O -0.954 6.954 13 O -0.939 6.939 14 N -0.847 5.847 15 C -0.185 4.185 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.006 3.994 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.232 0.768 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.295 0.705 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.041 0.959 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.264 18.039 0.177 21.268 hybrid contribution 0.777 -0.114 0.385 0.875 sum -10.487 17.925 0.562 20.775 Atomic orbital electron populations 1.21994 0.94316 1.02123 1.02300 1.21491 0.92529 0.80913 0.98162 1.45831 1.51144 1.12293 1.25568 1.20204 0.80068 0.86821 0.81623 1.90458 1.38160 1.77676 1.35620 1.22225 1.03542 0.94211 0.99345 1.20209 0.97092 0.89203 0.86598 1.22395 0.93890 1.04242 1.01442 1.22523 1.04023 0.95101 0.94056 1.30786 1.12452 1.22247 1.07101 1.06658 0.75168 0.78482 0.74297 1.93596 1.78103 1.84072 1.39639 1.93689 1.34988 1.80115 1.85065 1.55265 1.72469 1.26778 1.30150 1.23225 1.00516 0.98904 0.95888 1.21137 0.89909 0.99905 0.83762 1.44461 1.07768 1.78909 1.01740 1.19107 0.89327 1.37404 0.89031 0.90547 1.24743 0.97724 1.01996 0.95996 1.69953 1.24002 1.54233 1.09155 0.86073 0.82503 0.77612 0.79842 1.20477 1.21775 1.21842 1.21890 0.87567 0.94848 0.95110 0.90636 0.92039 0.93345 0.76766 0.88166 0.87868 0.92223 0.92355 0.89543 0.87031 0.88317 0.84234 0.84380 0.70515 0.91874 0.91003 0.93688 0.93912 0.93968 0.95855 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.57 37.16 0.32 -1.80 16 2 C 0.16 2.60 0.82 -129.67 -0.11 2.49 16 3 N -0.70 -10.28 5.18 -45.62 -0.24 -10.51 16 4 C 0.53 7.37 6.68 -10.98 -0.07 7.29 16 5 O -0.54 -8.58 8.60 5.55 0.05 -8.53 16 6 C -0.15 -1.52 4.74 -27.88 -0.13 -1.65 16 7 C 0.16 1.50 0.83 -131.74 -0.11 1.39 16 8 C -0.16 -1.37 8.25 37.16 0.31 -1.06 16 9 C -0.12 -0.74 5.56 -25.27 -0.14 -0.88 16 10 C -0.60 -3.91 7.66 38.51 0.29 -3.62 16 11 S 2.56 31.62 6.47 -107.50 -0.70 30.93 16 12 O -0.96 -15.20 18.14 -57.40 -1.04 -16.24 16 13 O -0.95 -15.67 18.15 -57.40 -1.04 -16.72 16 14 N -1.07 -13.54 5.60 0.60 0.00 -13.53 16 15 C -0.15 -2.52 5.98 -24.90 -0.15 -2.67 16 16 C 0.18 4.14 5.36 -3.06 -0.02 4.13 16 17 N -0.60 -15.35 3.40 -169.99 -0.58 -15.92 16 18 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 22 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 C 0.13 2.84 6.14 -2.47 -0.02 2.83 16 27 H 0.07 1.14 6.23 -51.93 -0.32 0.82 16 28 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.40 5.21 8.50 -40.82 -0.35 4.86 16 31 H 0.10 0.66 8.13 -51.92 -0.42 0.24 16 32 H 0.10 1.09 7.98 -51.93 -0.41 0.67 16 33 H 0.06 0.37 8.04 -51.93 -0.42 -0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.95 6.04 -51.93 -0.31 0.64 16 36 H 0.11 0.41 7.71 -51.92 -0.40 0.01 16 37 H 0.10 0.55 7.72 -51.93 -0.40 0.15 16 38 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.45 6.58 6.55 -40.36 -0.26 6.31 16 41 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 43 H 0.04 1.15 7.38 -51.93 -0.38 0.76 16 44 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.02 0.51 8.03 -51.93 -0.42 0.09 16 47 H 0.05 1.21 6.59 -51.93 -0.34 0.87 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -37.58 372.43 -9.78 -47.36 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.33 Total: 6.54 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.07 Total: -0.35 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -0.24 Total: -66.56 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -2.04 Total: -41.49 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Atomic # 16 Polarization: 31.62 SS G_CDS: -0.70 Total: 30.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.58 -9.78 -47.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733411998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.859 kcal (2) G-P(sol) polarization free energy of solvation -37.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds