Wall clock time and date at job start Wed Apr 1 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 110.89106 * 2 1 4 4 C 1.34777 * 119.99525 * 300.69820 * 3 2 1 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 3 2 7 7 C 1.53004 * 109.47208 * 180.27843 * 6 4 3 8 8 C 1.53006 * 108.57879 * 67.00031 * 7 6 4 9 9 C 1.53196 * 108.64758 * 185.00047 * 7 6 4 10 10 C 1.55552 * 106.24158 * 148.66136 * 9 7 6 11 11 S 1.83904 * 99.64012 * 323.01041 * 10 9 7 12 12 O 1.42098 * 111.46672 * 144.09378 * 11 10 9 13 13 O 1.42109 * 111.46392 * 283.93940 * 11 10 9 14 14 N 1.46453 * 108.64599 * 309.17147 * 7 6 4 15 15 C 1.55160 * 111.00482 * 123.88224 * 2 1 3 16 16 C 1.54319 * 102.94699 * 153.60990 * 15 2 1 17 17 N 1.47026 * 107.26988 * 337.80510 * 16 15 2 18 18 C 1.36932 * 125.65104 * 178.97317 * 17 16 15 19 19 H 1.07997 * 120.00289 * 179.97438 * 18 17 16 20 20 C 1.38817 * 119.99815 * 359.97438 * 18 17 16 21 21 N 1.31613 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46951 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47196 * 119.99578 * 22 20 18 25 25 H 1.48496 * 109.46820 * 239.99696 * 22 20 18 26 26 C 1.47525 * 108.71421 * 358.94363 * 17 16 15 27 27 H 1.08998 * 109.47165 * 59.29650 * 1 2 3 28 28 H 1.09000 * 109.47753 * 179.30437 * 1 2 3 29 29 H 1.09007 * 109.46902 * 299.30081 * 1 2 3 30 30 H 0.97000 * 120.00580 * 120.70566 * 3 2 1 31 31 H 1.09009 * 109.47352 * 300.27556 * 6 4 3 32 32 H 1.08998 * 109.47585 * 60.27844 * 6 4 3 33 33 H 1.08998 * 109.46675 * 60.70351 * 8 7 6 34 34 H 1.09004 * 109.46909 * 180.70342 * 8 7 6 35 35 H 1.08995 * 109.47027 * 300.69913 * 8 7 6 36 36 H 1.09010 * 110.09900 * 267.85055 * 9 7 6 37 37 H 1.08994 * 110.10370 * 29.46190 * 9 7 6 38 38 H 1.09002 * 111.37757 * 80.61156 * 10 9 7 39 39 H 1.09000 * 111.37090 * 205.35656 * 10 9 7 40 40 H 0.97001 * 126.08351 * 57.14807 * 14 7 6 41 41 H 1.09006 * 110.71605 * 271.97612 * 15 2 1 42 42 H 1.09001 * 110.71860 * 35.06784 * 15 2 1 43 43 H 1.09001 * 109.88411 * 97.21904 * 16 15 2 44 44 H 1.08998 * 109.88650 * 218.23525 * 16 15 2 45 45 H 0.97008 * 120.00285 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.37002 * 265.30275 * 26 17 16 47 47 H 1.09005 * 110.41172 * 142.95019 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7359 2.2107 -1.0037 5 8 1.0183 1.8355 -1.9066 6 6 2.2683 3.6205 -1.0005 7 6 1.7575 4.3613 -2.2380 8 6 0.2427 4.5356 -2.1113 9 6 2.4081 5.7475 -2.2824 10 6 2.5492 6.1140 -3.7875 11 16 2.9619 4.4571 -4.4705 12 8 2.3816 4.2642 -5.7532 13 8 4.3103 4.1026 -4.1959 14 7 2.0339 3.5431 -3.4208 15 6 2.0861 -0.8075 1.2025 16 6 3.4678 -1.2732 0.6969 17 7 3.4279 -1.2424 -0.7725 18 6 4.4652 -1.5657 -1.6059 19 1 4.3348 -1.5111 -2.6766 20 6 5.6844 -1.9635 -1.0746 21 7 5.8435 -2.0295 0.2302 22 14 7.0992 -2.4052 -2.2116 23 1 6.6663 -2.2506 -3.6237 24 1 8.2488 -1.5040 -1.9444 25 1 7.5070 -3.8126 -1.9706 26 6 2.0852 -0.8063 -1.2006 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3634 -1.0275 -0.0125 29 1 -0.3633 0.5030 0.8963 30 1 2.6261 1.6689 0.7222 31 1 1.9274 4.1356 -0.1023 32 1 3.3579 3.5975 -1.0148 33 1 0.0179 5.1226 -1.2208 34 1 -0.1386 5.0515 -2.9925 35 1 -0.2301 3.5569 -2.0303 36 1 1.7732 6.4757 -1.7775 37 1 3.3903 5.7156 -1.8109 38 1 1.6102 6.4888 -4.1949 39 1 3.3601 6.8243 -3.9491 40 1 1.7328 2.6330 -3.5690 41 1 2.1915 -0.1693 2.0799 42 1 1.4454 -1.6613 1.4231 43 1 4.2425 -0.5984 1.0609 44 1 3.6669 -2.2873 1.0434 45 1 6.6956 -2.3072 0.6015 46 1 1.4521 -1.6704 -1.4026 47 1 2.1553 -0.1715 -2.0839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733411998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:42 Heat of formation + Delta-G solvation = -98.097246 kcal Electronic energy + Delta-G solvation = -30598.893709 eV Core-core repulsion = 26522.715448 eV Total energy + Delta-G solvation = -4076.178260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.45037 -39.73209 -38.23396 -37.93053 -36.89279 -35.60763 -33.70017 -32.58447 -32.07251 -31.09811 -30.30530 -28.50136 -27.51796 -25.52996 -25.11228 -22.53686 -21.95028 -21.07265 -20.46992 -20.35877 -18.97719 -18.44051 -17.71300 -17.37449 -17.11314 -16.78084 -16.62246 -16.29721 -15.85336 -15.61820 -15.57677 -15.08779 -14.72804 -14.26146 -14.07750 -14.00470 -13.90528 -13.59659 -13.53494 -13.44446 -13.28157 -13.20024 -13.05849 -13.02428 -12.89016 -12.76518 -12.62992 -12.40637 -12.10405 -12.05576 -12.04245 -11.95572 -11.74843 -11.68691 -11.47836 -11.39109 -10.74196 -10.34346 -10.26197 -9.85258 -8.87501 -7.89429 -5.21871 -0.64349 1.39082 1.40343 1.50248 1.72822 1.86141 2.36369 2.44761 2.75145 3.09760 3.28939 3.39878 3.57351 3.61360 3.71608 3.77178 4.03779 4.07788 4.12756 4.21780 4.31003 4.57515 4.63170 4.64728 4.72372 4.75063 4.78926 4.87248 4.90319 4.93647 4.94682 4.98274 5.05073 5.11358 5.14629 5.35108 5.39154 5.42018 5.63314 5.65686 5.73682 5.82845 6.18089 6.35500 6.78172 7.10041 7.49499 7.75793 8.39055 9.20356 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.004263 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.843306 B = 6566.821869 C = 8307.627495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.170 3.830 3 N -0.703 5.703 4 C 0.515 3.485 5 O -0.562 6.562 6 C -0.148 4.148 7 C 0.148 3.852 8 C -0.157 4.157 9 C -0.116 4.116 10 C -0.542 4.542 11 S 2.531 3.469 12 O -1.016 7.016 13 O -1.009 7.009 14 N -1.087 6.087 15 C -0.128 4.128 16 C 0.185 3.815 17 N -0.620 5.620 18 C -0.240 4.240 19 H 0.063 0.937 20 C -0.056 4.056 21 N -0.943 5.943 22 Si 0.967 3.033 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.286 1.286 26 C 0.128 3.872 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.407 0.593 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.158 0.842 37 H 0.109 0.891 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.432 0.568 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.018 0.982 44 H 0.005 0.995 45 H 0.248 0.752 46 H 0.018 0.982 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 22.263 3.572 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.082 3.918 3 N -0.354 5.354 4 C 0.303 3.697 5 O -0.442 6.442 6 C -0.189 4.189 7 C 0.058 3.942 8 C -0.216 4.216 9 C -0.155 4.155 10 C -0.678 4.678 11 S 2.632 3.368 12 O -1.006 7.006 13 O -0.998 6.998 14 N -0.857 5.857 15 C -0.167 4.167 16 C 0.060 3.940 17 N -0.346 5.346 18 C -0.369 4.369 19 H 0.081 0.919 20 C -0.249 4.249 21 N -0.592 5.592 22 Si 0.796 3.204 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.002 3.998 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.243 0.757 31 H 0.164 0.836 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.176 0.824 37 H 0.127 0.873 38 H 0.187 0.813 39 H 0.190 0.810 40 H 0.277 0.723 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.036 0.964 44 H 0.023 0.977 45 H 0.057 0.943 46 H 0.036 0.964 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.815 21.590 2.138 25.198 hybrid contribution 1.206 -1.197 -0.253 1.718 sum -11.610 20.393 1.886 23.542 Atomic orbital electron populations 1.21892 0.91768 1.02695 1.03182 1.21268 0.94116 0.81499 0.94892 1.45860 1.51630 1.11433 1.26443 1.21025 0.79584 0.88309 0.80784 1.90467 1.39125 1.78433 1.36176 1.22328 1.02890 0.91849 1.01835 1.20653 0.98330 0.90362 0.84875 1.22358 0.92619 1.03171 1.03411 1.22754 1.05493 0.93633 0.93662 1.30545 1.14957 1.15928 1.06360 1.07238 0.74025 0.81641 0.73925 1.93520 1.78259 1.86217 1.42569 1.93610 1.37944 1.82843 1.85449 1.55305 1.71991 1.26610 1.31817 1.23081 0.96560 1.00052 0.96975 1.20932 0.93135 0.97294 0.82598 1.44693 1.08496 1.78821 1.02634 1.19297 0.90821 1.37633 0.89155 0.91879 1.25432 0.99723 1.02351 0.97418 1.70132 1.24190 1.54676 1.10197 0.85188 0.79651 0.77383 0.78216 1.20362 1.21532 1.21219 1.22031 0.86050 0.95001 0.96762 0.91743 0.91614 0.90424 0.75741 0.83639 0.88622 0.88847 0.91574 0.92660 0.82368 0.87276 0.81262 0.81018 0.72313 0.88317 0.89516 0.96396 0.97688 0.94278 0.96388 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.57 71.98 0.62 -3.00 16 2 C 0.17 5.51 0.82 5.00 0.00 5.52 16 3 N -0.70 -19.83 5.18 -416.64 -2.16 -21.98 16 4 C 0.51 13.97 6.68 87.66 0.59 14.56 16 5 O -0.56 -18.12 8.60 -3.04 -0.03 -18.15 16 6 C -0.15 -2.59 4.74 29.85 0.14 -2.44 16 7 C 0.15 2.37 0.83 3.68 0.00 2.38 16 8 C -0.16 -2.12 8.25 71.98 0.59 -1.53 16 9 C -0.12 -0.84 5.56 31.54 0.18 -0.66 16 10 C -0.54 -4.71 7.66 72.86 0.56 -4.15 16 11 S 2.53 63.67 6.47 -56.49 -0.37 63.30 16 12 O -1.02 -33.92 18.14 -127.79 -2.32 -36.23 16 13 O -1.01 -35.21 18.15 -127.79 -2.32 -37.52 16 14 N -1.09 -27.85 5.60 -152.02 -0.85 -28.70 16 15 C -0.13 -4.22 5.98 31.78 0.19 -4.02 16 16 C 0.19 8.86 5.36 86.73 0.47 9.32 16 17 N -0.62 -32.89 3.40 -691.72 -2.35 -35.24 16 18 C -0.24 -14.35 10.28 84.04 0.86 -13.48 16 19 H 0.06 3.83 7.83 -2.91 -0.02 3.80 16 20 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 21 N -0.94 -57.06 10.31 21.65 0.22 -56.83 16 22 Si 0.97 48.62 29.55 68.60 2.03 50.65 16 23 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 C 0.13 5.66 6.14 86.84 0.53 6.20 16 27 H 0.06 1.88 6.23 -2.39 -0.01 1.87 16 28 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.41 9.89 8.50 -92.71 -0.79 9.11 16 31 H 0.15 1.19 8.13 -2.38 -0.02 1.17 16 32 H 0.10 1.86 7.98 -2.39 -0.02 1.85 16 33 H 0.09 0.63 8.04 -2.39 -0.02 0.61 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 1.13 6.04 -2.39 -0.01 1.12 16 36 H 0.16 -0.13 7.71 -2.38 -0.02 -0.15 16 37 H 0.11 0.67 7.72 -2.39 -0.02 0.65 16 38 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.17 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.43 13.75 6.55 -93.00 -0.61 13.14 16 41 H 0.10 2.58 8.07 -2.38 -0.02 2.56 16 42 H 0.09 2.63 8.04 -2.39 -0.02 2.61 16 43 H 0.02 0.94 7.38 -2.39 -0.02 0.92 16 44 H 0.00 0.27 7.50 -2.39 -0.02 0.25 16 45 H 0.25 14.53 8.31 -92.70 -0.77 13.75 16 46 H 0.02 0.82 8.03 -2.39 -0.02 0.80 16 47 H 0.03 1.45 6.59 -2.38 -0.02 1.43 16 Total: -1.00 -90.86 372.43 -3.34 -94.20 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.40 Total: 20.68 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.20 Total: 5.84 kcal Atomic # 7 Polarization: -137.62 SS G_CDS: -5.13 Total: -142.76 kcal Atomic # 8 Polarization: -87.25 SS G_CDS: -4.66 Total: -91.91 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Atomic # 16 Polarization: 63.67 SS G_CDS: -0.37 Total: 63.30 kcal Total: -90.86 -3.34 -94.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733411998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.902 kcal (2) G-P(sol) polarization free energy of solvation -90.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds