Wall clock time and date at job start Wed Apr 1 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 108.58177 * 2 1 4 4 C 1.50704 * 109.46955 * 64.30053 * 3 2 1 5 5 O 1.21284 * 119.99946 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99832 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99716 * 179.97438 * 6 4 3 8 8 C 1.53009 * 110.91541 * 56.10117 * 7 6 4 9 9 C 1.55160 * 111.00443 * 180.02562 * 7 6 4 10 10 C 1.54316 * 102.94268 * 82.57531 * 9 7 6 11 11 N 1.47026 * 107.27365 * 22.19228 * 10 9 7 12 12 C 1.36933 * 125.65326 * 180.79632 * 11 10 9 13 13 H 1.08001 * 120.00302 * 180.02562 * 12 11 10 14 14 C 1.38819 * 119.99866 * 0.02562 * 12 11 10 15 15 N 1.31626 * 119.99573 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47310 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47168 * 119.99926 * 16 14 12 19 19 H 1.48497 * 109.47144 * 239.99805 * 16 14 12 20 20 C 1.47425 * 108.70074 * 1.05989 * 11 10 9 21 21 C 1.53200 * 108.64405 * 242.00733 * 2 1 3 22 22 C 1.55561 * 106.24013 * 266.61255 * 21 2 1 23 23 S 1.83902 * 99.64094 * 323.01328 * 22 21 2 24 24 O 1.42103 * 111.46733 * 144.08209 * 23 22 21 25 25 O 1.42093 * 111.46717 * 283.93388 * 23 22 21 26 26 N 1.46443 * 108.64856 * 118.00024 * 2 1 3 27 27 H 1.08998 * 109.46992 * 60.69617 * 1 2 3 28 28 H 1.08993 * 109.47306 * 180.70057 * 1 2 3 29 29 H 1.09002 * 109.46938 * 300.69966 * 1 2 3 30 30 H 1.09003 * 109.47645 * 304.30463 * 3 2 1 31 31 H 1.09000 * 109.47320 * 184.30059 * 3 2 1 32 32 H 0.96993 * 120.00179 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47161 * 183.89854 * 8 7 6 34 34 H 1.08991 * 109.46994 * 303.89949 * 8 7 6 35 35 H 1.08999 * 109.47006 * 63.90137 * 8 7 6 36 36 H 1.08997 * 110.71793 * 324.20861 * 9 7 6 37 37 H 1.09003 * 110.87062 * 201.01204 * 9 7 6 38 38 H 1.09004 * 109.88447 * 262.78098 * 10 9 7 39 39 H 1.08996 * 110.01243 * 141.68527 * 10 9 7 40 40 H 0.97000 * 119.99477 * 180.02562 * 15 14 12 41 41 H 1.09001 * 110.36478 * 94.71036 * 20 11 10 42 42 H 1.08998 * 110.36859 * 217.03414 * 20 11 10 43 43 H 1.08995 * 110.10345 * 25.80594 * 21 2 1 44 44 H 1.09007 * 110.09752 * 147.42598 * 21 2 1 45 45 H 1.08999 * 111.36508 * 80.61299 * 22 21 2 46 46 H 1.08998 * 111.37454 * 205.40866 * 22 21 2 47 47 H 0.97002 * 126.08214 * 299.15994 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4502 0.0000 4 6 1.5936 2.1227 1.2803 5 8 0.9639 1.5029 2.1112 6 7 1.9150 3.4126 1.5025 7 6 1.5024 4.0664 2.7468 8 6 2.0121 3.2936 3.9650 9 6 1.9796 5.5423 2.7843 10 6 0.8941 6.2774 1.9704 11 7 -0.3127 5.4379 1.9941 12 6 -1.4988 5.7276 1.3740 13 1 -2.3303 5.0429 1.4521 14 6 -1.6323 6.9013 0.6448 15 7 -0.6186 7.7354 0.5492 16 14 -3.2503 7.2968 -0.2005 17 1 -4.2241 6.2061 0.0593 18 1 -3.7868 8.5755 0.3307 19 1 -3.0267 7.4234 -1.6631 20 6 -0.0365 4.2357 2.8014 21 6 2.0198 -0.6813 -1.2818 22 6 2.2425 -2.1781 -0.9211 23 16 2.8965 -1.9892 0.7873 24 8 2.4501 -3.0394 1.6341 25 8 4.2490 -1.5536 0.7812 26 7 1.9983 -0.6514 1.2251 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3633 0.5247 0.8837 30 1 1.5844 1.9793 -0.8489 31 1 3.1047 1.4681 -0.0771 32 1 2.4189 3.9082 0.8382 33 1 1.6348 3.7599 4.8751 34 1 1.6628 2.2625 3.9134 35 1 3.1020 3.3080 3.9744 36 1 2.9545 5.6446 2.3077 37 1 2.0118 5.9142 3.8085 38 1 1.2303 6.4141 0.9425 39 1 0.6808 7.2460 2.4224 40 1 -0.7120 8.5558 0.0400 41 1 -0.3655 4.3855 3.8297 42 1 -0.5294 3.3658 2.3674 43 1 1.2664 -0.5928 -2.0645 44 1 2.9569 -0.2318 -1.6103 45 1 1.3038 -2.7321 -0.9280 46 1 2.9783 -2.6401 -1.5792 47 1 1.8190 -0.3584 2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733411999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:46 Heat of formation + Delta-G solvation = -97.892082 kcal Electronic energy + Delta-G solvation = -30322.165124 eV Core-core repulsion = 26245.995760 eV Total energy + Delta-G solvation = -4076.169364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.46080 -39.74234 -38.23155 -37.91628 -36.87259 -35.57917 -33.67718 -32.59187 -32.09146 -31.08310 -30.30620 -28.56086 -27.49403 -25.50330 -25.11969 -22.52359 -21.94818 -21.08970 -20.44369 -20.35861 -18.93503 -18.43177 -17.74301 -17.36596 -17.08814 -16.74174 -16.59556 -16.25646 -15.91223 -15.61210 -15.53301 -14.96481 -14.81975 -14.29728 -14.09937 -14.03090 -13.89332 -13.59860 -13.58058 -13.39145 -13.22211 -13.17437 -13.03852 -13.02712 -12.85956 -12.74867 -12.66200 -12.41737 -12.15033 -12.03226 -11.98735 -11.92460 -11.77181 -11.65074 -11.50681 -11.38633 -10.70947 -10.31145 -10.28883 -9.85827 -8.85088 -7.84692 -5.18373 -0.61176 1.44845 1.46385 1.56116 1.73144 1.85809 2.34515 2.49212 2.75272 3.09744 3.33871 3.40777 3.58463 3.62896 3.71243 3.75075 4.03761 4.07065 4.11461 4.21240 4.32250 4.54474 4.63480 4.64749 4.72519 4.74952 4.77931 4.86664 4.88638 4.91071 4.93968 4.96406 5.04721 5.09866 5.10729 5.32139 5.39182 5.44612 5.60280 5.66293 5.74876 5.83018 6.20794 6.35234 6.77830 7.12657 7.48120 7.78654 8.43219 9.25284 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.003155 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.304242 B = 8872.831249 C = 9781.534969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.156 3.844 3 C -0.147 4.147 4 C 0.514 3.486 5 O -0.561 6.561 6 N -0.703 5.703 7 C 0.170 3.830 8 C -0.144 4.144 9 C -0.131 4.131 10 C 0.187 3.813 11 N -0.620 5.620 12 C -0.239 4.239 13 H 0.070 0.930 14 C -0.058 4.058 15 N -0.946 5.946 16 Si 0.973 3.027 17 H -0.272 1.272 18 H -0.294 1.294 19 H -0.287 1.287 20 C 0.134 3.866 21 C -0.117 4.117 22 C -0.553 4.553 23 S 2.554 3.446 24 O -1.013 7.013 25 O -0.996 6.996 26 N -1.084 6.084 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.407 0.593 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.020 0.980 39 H 0.005 0.995 40 H 0.247 0.753 41 H 0.016 0.984 42 H 0.033 0.967 43 H 0.143 0.857 44 H 0.118 0.882 45 H 0.161 0.839 46 H 0.173 0.827 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.695 -17.166 -6.533 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 C -0.189 4.189 4 C 0.303 3.697 5 O -0.441 6.441 6 N -0.354 5.354 7 C 0.082 3.918 8 C -0.202 4.202 9 C -0.169 4.169 10 C 0.062 3.938 11 N -0.346 5.346 12 C -0.368 4.368 13 H 0.088 0.912 14 C -0.252 4.252 15 N -0.595 5.595 16 Si 0.802 3.198 17 H -0.197 1.197 18 H -0.221 1.221 19 H -0.214 1.214 20 C 0.008 3.992 21 C -0.156 4.156 22 C -0.688 4.688 23 S 2.654 3.346 24 O -1.003 7.003 25 O -0.986 6.986 26 N -0.853 5.853 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.242 0.758 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.038 0.962 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.034 0.966 42 H 0.051 0.949 43 H 0.161 0.839 44 H 0.137 0.863 45 H 0.179 0.821 46 H 0.191 0.809 47 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 9.894 -17.994 -5.505 21.260 hybrid contribution -1.448 1.466 -0.378 2.095 sum 8.446 -16.527 -5.884 19.471 Atomic orbital electron populations 1.22418 0.93877 1.02913 1.03175 1.20475 0.96088 0.92096 0.84794 1.22301 1.04737 0.95826 0.95997 1.21010 0.78197 0.81330 0.89209 1.90491 1.41036 1.64628 1.47916 1.45859 1.56929 1.11948 1.20623 1.21242 0.93118 0.92146 0.85288 1.21956 1.01297 1.01360 0.95606 1.23082 0.99191 0.92981 1.01680 1.20915 0.84754 0.91740 0.96408 1.44691 1.10589 1.20739 1.58552 1.19350 0.89979 1.03352 1.24109 0.91213 1.25503 1.00879 0.97047 1.01737 1.70160 1.30945 1.12258 1.46130 0.85092 0.79429 0.77439 0.77852 1.19712 1.22088 1.21410 1.21939 0.94828 0.89000 0.93480 1.22698 1.07052 0.89796 0.96062 1.30602 1.15034 1.04602 1.18543 1.06586 0.74366 0.73665 0.80032 1.93540 1.82404 1.57655 1.66693 1.93590 1.36262 1.81141 1.87562 1.55136 1.71112 1.45522 1.13540 0.90663 0.91373 0.92878 0.85954 0.86259 0.75783 0.91575 0.91272 0.91183 0.88709 0.89773 0.96158 0.97720 0.94383 0.96586 0.94908 0.83936 0.86334 0.82114 0.80877 0.72226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.23 71.98 0.59 -2.53 16 2 C 0.16 2.50 0.83 3.68 0.00 2.51 16 3 C -0.15 -2.58 4.70 29.85 0.14 -2.44 16 4 C 0.51 13.83 6.68 87.66 0.59 14.42 16 5 O -0.56 -17.77 8.62 -3.04 -0.03 -17.80 16 6 N -0.70 -19.92 5.18 -416.62 -2.16 -22.08 16 7 C 0.17 5.54 0.83 5.00 0.00 5.54 16 8 C -0.14 -4.07 8.59 71.99 0.62 -3.45 16 9 C -0.13 -4.34 5.97 31.78 0.19 -4.15 16 10 C 0.19 8.69 5.37 86.73 0.47 9.15 16 11 N -0.62 -31.27 3.39 -691.99 -2.35 -33.62 16 12 C -0.24 -13.37 10.28 84.04 0.86 -12.50 16 13 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 14 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 15 N -0.95 -54.95 10.31 21.65 0.22 -54.73 16 16 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 C 0.13 5.69 6.16 86.86 0.54 6.23 16 21 C -0.12 -0.84 5.56 31.54 0.18 -0.67 16 22 C -0.55 -3.85 7.66 72.86 0.56 -3.29 16 23 S 2.55 49.08 6.46 -56.49 -0.37 48.71 16 24 O -1.01 -28.28 18.14 -127.79 -2.32 -30.60 16 25 O -1.00 -25.45 18.14 -127.79 -2.32 -27.77 16 26 N -1.08 -22.59 5.61 -152.04 -0.85 -23.44 16 27 H 0.07 1.20 8.04 -2.39 -0.02 1.18 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.45 5.80 -2.39 -0.01 1.44 16 30 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.12 1.63 8.05 -2.39 -0.02 1.61 16 32 H 0.41 10.09 8.51 -92.71 -0.79 9.30 16 33 H 0.07 1.79 8.07 -2.39 -0.02 1.77 16 34 H 0.07 2.14 5.92 -2.39 -0.01 2.12 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 2.59 8.09 -2.39 -0.02 2.57 16 37 H 0.08 2.62 8.04 -2.39 -0.02 2.60 16 38 H 0.02 1.03 7.40 -2.38 -0.02 1.01 16 39 H 0.00 0.24 7.48 -2.39 -0.02 0.23 16 40 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.02 0.71 7.98 -2.39 -0.02 0.69 16 42 H 0.03 1.49 6.86 -2.39 -0.02 1.48 16 43 H 0.14 0.37 7.71 -2.39 -0.02 0.35 16 44 H 0.12 0.48 7.77 -2.38 -0.02 0.46 16 45 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.17 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.43 10.93 6.79 -93.11 -0.63 10.29 16 Total: -1.00 -82.12 372.45 -3.37 -85.49 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.42 Total: 22.62 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.20 Total: 6.02 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -5.14 Total: -133.86 kcal Atomic # 8 Polarization: -71.50 SS G_CDS: -4.66 Total: -76.16 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 49.08 SS G_CDS: -0.37 Total: 48.71 kcal Total: -82.12 -3.37 -85.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733411999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.404 kcal (2) G-P(sol) polarization free energy of solvation -82.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds