Wall clock time and date at job start Wed Apr 1 2020 03:53:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.30086 * 124.88045 * 2 1
4 4 C 1.35579 * 108.84285 * 180.02562 * 3 2 1
5 5 C 1.40285 * 106.62292 * 0.18700 * 4 3 2
6 6 C 1.38587 * 119.93028 * 180.32189 * 5 4 3
7 7 C 1.38214 * 120.21018 * 359.77285 * 6 5 4
8 8 C 1.38181 * 120.67401 * 359.97438 * 7 6 5
9 9 C 1.39359 * 120.24528 * 0.02562 * 8 7 6
10 10 C 1.47431 * 120.30091 * 179.97438 * 9 8 7
11 11 O 1.21600 * 120.00414 * 179.97438 * 10 9 8
12 12 N 1.34776 * 119.99934 * 359.97438 * 10 9 8
13 13 C 1.46502 * 120.00097 * 179.97438 * 12 10 9
14 14 C 1.53002 * 109.47330 * 180.02562 * 13 12 10
15 15 O 1.42903 * 110.88601 * 303.88366 * 14 13 12
16 16 C 1.55155 * 111.00656 * 180.02562 * 14 13 12
17 17 C 1.54321 * 102.94327 * 206.38710 * 16 14 13
18 18 N 1.47024 * 107.26902 * 22.18783 * 17 16 14
19 19 C 1.36945 * 125.64529 * 181.02795 * 18 17 16
20 20 H 1.07993 * 119.99956 * 168.97531 * 19 18 17
21 21 C 1.38804 * 119.99858 * 348.96917 * 19 18 17
22 22 N 1.31619 * 120.00008 * 165.61387 * 21 19 18
23 23 Si 1.86799 * 120.00344 * 345.61227 * 21 19 18
24 24 H 1.48508 * 109.47333 * 65.29582 * 23 21 19
25 25 H 1.48504 * 109.47487 * 185.29203 * 23 21 19
26 26 H 1.48496 * 109.47478 * 305.29213 * 23 21 19
27 27 C 1.47423 * 108.70580 * 1.28870 * 18 17 16
28 28 O 1.34148 * 124.88388 * 180.53360 * 2 1 3
29 29 H 1.09000 * 109.46716 * 90.00371 * 1 2 3
30 30 H 1.08997 * 109.47011 * 209.99776 * 1 2 3
31 31 H 1.08995 * 109.47548 * 330.00077 * 1 2 3
32 32 H 1.07992 * 119.89432 * 179.74462 * 6 5 4
33 33 H 1.08004 * 119.66399 * 179.97438 * 7 6 5
34 34 H 1.08006 * 119.88030 * 179.97438 * 8 7 6
35 35 H 0.96998 * 120.00222 * 0.02562 * 12 10 9
36 36 H 1.09008 * 109.46721 * 60.00684 * 13 12 10
37 37 H 1.08997 * 109.47330 * 300.00272 * 13 12 10
38 38 H 0.96703 * 113.99934 * 56.11626 * 15 14 13
39 39 H 1.08998 * 110.72398 * 88.02109 * 16 14 13
40 40 H 1.09003 * 110.87009 * 324.81958 * 16 14 13
41 41 H 1.09007 * 109.88056 * 262.77694 * 17 16 14
42 42 H 1.08997 * 109.88609 * 141.61110 * 17 16 14
43 43 H 0.97003 * 120.00039 * 354.92489 * 22 21 19
44 44 H 1.09002 * 110.36342 * 94.48436 * 27 18 17
45 45 H 1.08997 * 110.36760 * 216.80298 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2509 1.0672 0.0000
4 6 3.5539 0.6926 -0.0006
5 6 3.5682 -0.7102 -0.0053
6 6 4.7763 -1.3894 -0.0002
7 6 5.9678 -0.6890 0.0048
8 6 5.9734 0.6928 0.0043
9 6 4.7723 1.3995 -0.0008
10 6 4.7768 2.8738 -0.0008
11 8 3.7257 3.4851 -0.0057
12 7 5.9461 3.5442 0.0047
13 6 5.9506 5.0092 0.0041
14 6 7.3946 5.5148 0.0103
15 8 8.1165 4.9811 1.1221
16 6 7.4409 7.0656 0.0106
17 6 8.8008 7.3710 -0.6520
18 7 9.1754 6.1902 -1.4439
19 6 10.3268 6.0500 -2.1719
20 1 10.5969 5.0850 -2.5745
21 6 11.1466 7.1482 -2.3923
22 7 12.3735 6.9750 -2.8360
23 14 10.5085 8.8719 -2.0594
24 1 10.2473 9.0311 -0.6061
25 1 11.5222 9.8672 -2.4919
26 1 9.2487 9.0881 -2.8153
27 6 8.1033 5.1847 -1.3295
28 8 2.2742 -1.1004 -0.0102
29 1 -0.3633 -0.0001 -1.0277
30 1 -0.3633 -0.8900 0.5138
31 1 -0.3634 0.8899 0.5138
32 1 4.7866 -2.4692 0.0003
33 1 6.9042 -1.2273 0.0091
34 1 6.9120 1.2271 0.0086
35 1 6.7846 3.0566 0.0082
36 1 5.4336 5.3744 0.8916
37 1 5.4422 5.3738 -0.8885
38 1 8.1156 4.0150 1.1645
39 1 7.4128 7.4522 1.0293
40 1 6.6229 7.4786 -0.5798
41 1 9.5531 7.5571 0.1145
42 1 8.7090 8.2402 -1.3032
43 1 12.7301 6.0787 -2.9389
44 1 7.4066 5.2767 -2.1627
45 1 8.5267 4.1808 -1.2971
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754762488.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:53:39
Heat of formation + Delta-G solvation = 3.129082 kcal
Electronic energy + Delta-G solvation = -29834.550761 eV
Core-core repulsion = 25627.318052 eV
Total energy + Delta-G solvation = -4207.232709 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-43.66698 -40.22259 -38.88768 -37.84503 -35.53067 -35.18408 -34.25054 -32.42341
-32.04714 -31.55557 -29.91741 -28.71389 -28.50422 -26.08244 -24.18410 -23.56463
-22.69545 -22.19111 -21.09773 -20.48677 -20.18187 -18.62186 -18.27619 -17.51456
-17.26387 -17.01129 -16.53129 -15.81349 -15.71526 -15.33847 -15.11657 -14.64370
-14.35414 -14.16353 -14.00573 -13.84127 -13.67818 -13.55453 -13.27291 -13.15835
-13.01705 -12.59818 -12.55580 -12.35824 -12.17142 -11.87190 -11.65138 -11.40592
-11.28011 -11.05182 -10.87026 -10.72678 -10.07364 -9.95885 -9.82498 -9.34226
-9.31918 -9.17851 -8.97758 -8.83609 -8.69886 -7.03535 -6.31614 -3.23309
-0.05811 0.65888 2.03121 2.04751 2.55938 2.87666 3.37846 3.44370
3.44742 3.50365 3.72442 4.04874 4.25525 4.30496 4.42129 4.53113
4.59179 4.62172 4.63906 4.80656 4.87535 4.89296 4.97629 5.11109
5.16063 5.18909 5.33985 5.44749 5.45740 5.60199 5.67553 5.70656
5.72934 5.80212 5.83766 6.00269 6.07612 6.11185 6.18716 6.27109
6.32636 6.53110 6.78240 7.24382 7.30265 7.61810 7.76759 8.07398
8.31927 9.02540 9.54150 10.20559 11.19099
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.021692 B = 0.002340 C = 0.002205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.487867 B =11965.409917 C =12694.907428
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C 0.247 3.753
3 N -0.455 5.455
4 C 0.076 3.924
5 C -0.004 4.004
6 C -0.065 4.065
7 C -0.101 4.101
8 C -0.081 4.081
9 C -0.079 4.079
10 C 0.555 3.445
11 O -0.507 6.507
12 N -0.724 5.724
13 C 0.106 3.894
14 C 0.102 3.898
15 O -0.535 6.535
16 C -0.113 4.113
17 C 0.114 3.886
18 N -0.606 5.606
19 C -0.321 4.321
20 H 0.077 0.923
21 C -0.021 4.021
22 N -0.928 5.928
23 Si 1.071 2.929
24 H -0.285 1.285
25 H -0.302 1.302
26 H -0.298 1.298
27 C 0.117 3.883
28 O -0.214 6.214
29 H 0.100 0.900
30 H 0.093 0.907
31 H 0.108 0.892
32 H 0.141 0.859
33 H 0.150 0.850
34 H 0.143 0.857
35 H 0.396 0.604
36 H 0.078 0.922
37 H 0.082 0.918
38 H 0.365 0.635
39 H 0.082 0.918
40 H 0.083 0.917
41 H 0.051 0.949
42 H 0.030 0.970
43 H 0.261 0.739
44 H 0.033 0.967
45 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.003 -18.650 8.461 29.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.036 3.964
3 N -0.184 5.184
4 C -0.038 4.038
5 C -0.054 4.054
6 C -0.084 4.084
7 C -0.119 4.119
8 C -0.101 4.101
9 C -0.083 4.083
10 C 0.341 3.659
11 O -0.382 6.382
12 N -0.379 5.379
13 C -0.018 4.018
14 C 0.059 3.941
15 O -0.339 6.339
16 C -0.151 4.151
17 C -0.010 4.010
18 N -0.334 5.334
19 C -0.448 4.448
20 H 0.095 0.905
21 C -0.220 4.220
22 N -0.569 5.569
23 Si 0.905 3.095
24 H -0.212 1.212
25 H -0.230 1.230
26 H -0.227 1.227
27 C -0.009 4.009
28 O -0.106 6.106
29 H 0.119 0.881
30 H 0.112 0.888
31 H 0.126 0.874
32 H 0.159 0.841
33 H 0.168 0.832
34 H 0.160 0.840
35 H 0.232 0.768
36 H 0.096 0.904
37 H 0.100 0.900
38 H 0.211 0.789
39 H 0.100 0.900
40 H 0.102 0.898
41 H 0.069 0.931
42 H 0.047 0.953
43 H 0.071 0.929
44 H 0.051 0.949
45 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -21.402 -15.329 8.407 27.635
hybrid contribution 0.181 -3.280 -0.148 3.288
sum -21.221 -18.608 8.258 29.408
Atomic orbital electron populations
1.20451 0.80581 1.05733 1.05366 1.26816 0.96940 0.78086 0.94510
1.70804 1.00578 1.27952 1.19016 1.19511 0.91609 0.90563 1.02136
1.20240 0.84211 0.94147 1.06801 1.20072 0.87250 1.00655 1.00463
1.20976 0.97524 0.93695 0.99752 1.21350 0.96800 0.94651 0.97340
1.19226 0.90647 0.93341 1.05090 1.17901 0.84009 0.86519 0.77480
1.90860 1.30814 1.69028 1.47449 1.45851 1.08242 1.07707 1.76053
1.22012 0.97486 0.78840 1.03469 1.22746 0.88051 0.95475 0.87785
1.86640 1.75852 1.24379 1.47055 1.22574 0.98972 0.91647 1.01891
1.21974 0.94000 0.91056 0.93990 1.44681 1.19270 1.13579 1.55829
1.20138 0.96772 0.97323 1.30604 0.90529 1.25860 0.94846 1.02925
0.98413 1.70902 1.13668 1.24435 1.47913 0.83835 0.73392 0.76294
0.76014 1.21243 1.22997 1.22660 1.22201 0.91171 0.94205 0.93369
1.84498 1.15043 1.36429 1.74641 0.88146 0.88810 0.87370 0.84139
0.83225 0.83967 0.76846 0.90379 0.90017 0.78890 0.89984 0.89833
0.93131 0.95275 0.92912 0.94943 0.93762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.31 10.51 36.00 0.38 0.07 16
2 C 0.25 2.52 8.24 -13.02 -0.11 2.41 16
3 N -0.45 -6.37 10.62 -8.48 -0.09 -6.46 16
4 C 0.08 1.01 6.84 -84.45 -0.58 0.44 16
5 C 0.00 -0.04 7.42 -38.68 -0.29 -0.33 16
6 C -0.07 -0.50 10.05 -39.46 -0.40 -0.90 16
7 C -0.10 -0.67 10.00 -39.61 -0.40 -1.07 16
8 C -0.08 -0.68 9.53 -39.19 -0.37 -1.06 16
9 C -0.08 -0.97 5.90 -104.74 -0.62 -1.58 16
10 C 0.55 7.91 7.76 -12.52 -0.10 7.81 16
11 O -0.51 -9.16 16.07 5.28 0.08 -9.08 16
12 N -0.72 -8.69 5.15 -61.38 -0.32 -9.01 16
13 C 0.11 1.43 4.89 -4.04 -0.02 1.41 16
14 C 0.10 1.59 0.97 -88.35 -0.09 1.51 16
15 O -0.54 -8.34 13.21 -35.23 -0.47 -8.81 16
16 C -0.11 -1.90 6.15 -24.90 -0.15 -2.05 16
17 C 0.11 2.52 4.61 -3.06 -0.01 2.51 16
18 N -0.61 -14.78 3.32 -169.94 -0.56 -15.34 16
19 C -0.32 -9.21 10.56 -15.06 -0.16 -9.37 16
20 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16
21 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16
22 N -0.93 -29.33 13.70 55.49 0.76 -28.57 16
23 Si 1.07 27.15 24.53 -169.99 -4.17 22.98 16
24 H -0.29 -6.65 5.43 56.52 0.31 -6.34 16
25 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16
26 H -0.30 -7.26 6.84 56.52 0.39 -6.88 16
27 C 0.12 2.23 6.23 -2.41 -0.02 2.22 16
28 O -0.21 -2.23 10.78 3.71 0.04 -2.19 16
29 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16
30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16
31 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16
33 H 0.15 0.52 8.06 -52.48 -0.42 0.09 16
34 H 0.14 0.83 6.39 -52.48 -0.34 0.49 16
35 H 0.40 3.73 5.31 -40.82 -0.22 3.52 16
36 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16
37 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16
38 H 0.36 4.15 7.69 45.56 0.35 4.50 16
39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16
40 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16
41 H 0.05 1.20 6.78 -51.93 -0.35 0.85 16
42 H 0.03 0.68 3.82 -51.93 -0.20 0.48 16
43 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16
44 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16
45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
LS Contribution 367.77 15.07 5.54 5.54
Total: -1.00 -39.77 367.77 -7.27 -47.03
By element:
Atomic # 1 Polarization: 7.67 SS G_CDS: -5.07 Total: 2.60 kcal
Atomic # 6 Polarization: 4.32 SS G_CDS: -3.02 Total: 1.30 kcal
Atomic # 7 Polarization: -59.17 SS G_CDS: -0.21 Total: -59.38 kcal
Atomic # 8 Polarization: -19.74 SS G_CDS: -0.34 Total: -20.08 kcal
Atomic # 14 Polarization: 27.15 SS G_CDS: -4.17 Total: 22.98 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -39.77 -7.27 -47.03 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754762488.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.163 kcal
(2) G-P(sol) polarization free energy of solvation -39.768 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.396 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds