Wall clock time and date at job start Wed Apr 1 2020 03:53:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.30086 * 124.88045 * 2 1
4 4 C 1.35579 * 108.84285 * 180.02562 * 3 2 1
5 5 C 1.40285 * 106.62292 * 0.18700 * 4 3 2
6 6 C 1.38587 * 119.93028 * 180.32189 * 5 4 3
7 7 C 1.38214 * 120.21018 * 359.77285 * 6 5 4
8 8 C 1.38181 * 120.67401 * 359.97438 * 7 6 5
9 9 C 1.39359 * 120.24528 * 0.02562 * 8 7 6
10 10 C 1.47431 * 120.30091 * 179.97438 * 9 8 7
11 11 O 1.21600 * 120.00414 * 179.97438 * 10 9 8
12 12 N 1.34776 * 119.99934 * 359.97438 * 10 9 8
13 13 C 1.46502 * 120.00097 * 179.97438 * 12 10 9
14 14 C 1.53002 * 109.47330 * 180.02562 * 13 12 10
15 15 O 1.42903 * 110.88601 * 303.88366 * 14 13 12
16 16 C 1.55155 * 111.00656 * 180.02562 * 14 13 12
17 17 C 1.54321 * 102.94327 * 206.38710 * 16 14 13
18 18 N 1.47024 * 107.26902 * 22.18783 * 17 16 14
19 19 C 1.36945 * 125.64529 * 181.02795 * 18 17 16
20 20 H 1.07993 * 119.99956 * 168.97531 * 19 18 17
21 21 C 1.38804 * 119.99858 * 348.96917 * 19 18 17
22 22 N 1.31619 * 120.00008 * 165.61387 * 21 19 18
23 23 Si 1.86799 * 120.00344 * 345.61227 * 21 19 18
24 24 H 1.48508 * 109.47333 * 65.29582 * 23 21 19
25 25 H 1.48504 * 109.47487 * 185.29203 * 23 21 19
26 26 H 1.48496 * 109.47478 * 305.29213 * 23 21 19
27 27 C 1.47423 * 108.70580 * 1.28870 * 18 17 16
28 28 O 1.34148 * 124.88388 * 180.53360 * 2 1 3
29 29 H 1.09000 * 109.46716 * 90.00371 * 1 2 3
30 30 H 1.08997 * 109.47011 * 209.99776 * 1 2 3
31 31 H 1.08995 * 109.47548 * 330.00077 * 1 2 3
32 32 H 1.07992 * 119.89432 * 179.74462 * 6 5 4
33 33 H 1.08004 * 119.66399 * 179.97438 * 7 6 5
34 34 H 1.08006 * 119.88030 * 179.97438 * 8 7 6
35 35 H 0.96998 * 120.00222 * 0.02562 * 12 10 9
36 36 H 1.09008 * 109.46721 * 60.00684 * 13 12 10
37 37 H 1.08997 * 109.47330 * 300.00272 * 13 12 10
38 38 H 0.96703 * 113.99934 * 56.11626 * 15 14 13
39 39 H 1.08998 * 110.72398 * 88.02109 * 16 14 13
40 40 H 1.09003 * 110.87009 * 324.81958 * 16 14 13
41 41 H 1.09007 * 109.88056 * 262.77694 * 17 16 14
42 42 H 1.08997 * 109.88609 * 141.61110 * 17 16 14
43 43 H 0.97003 * 120.00039 * 354.92489 * 22 21 19
44 44 H 1.09002 * 110.36342 * 94.48436 * 27 18 17
45 45 H 1.08997 * 110.36760 * 216.80298 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2509 1.0672 0.0000
4 6 3.5539 0.6926 -0.0006
5 6 3.5682 -0.7102 -0.0053
6 6 4.7763 -1.3894 -0.0002
7 6 5.9678 -0.6890 0.0048
8 6 5.9734 0.6928 0.0043
9 6 4.7723 1.3995 -0.0008
10 6 4.7768 2.8738 -0.0008
11 8 3.7257 3.4851 -0.0057
12 7 5.9461 3.5442 0.0047
13 6 5.9506 5.0092 0.0041
14 6 7.3946 5.5148 0.0103
15 8 8.1165 4.9811 1.1221
16 6 7.4409 7.0656 0.0106
17 6 8.8008 7.3710 -0.6520
18 7 9.1754 6.1902 -1.4439
19 6 10.3268 6.0500 -2.1719
20 1 10.5969 5.0850 -2.5745
21 6 11.1466 7.1482 -2.3923
22 7 12.3735 6.9750 -2.8360
23 14 10.5085 8.8719 -2.0594
24 1 10.2473 9.0311 -0.6061
25 1 11.5222 9.8672 -2.4919
26 1 9.2487 9.0881 -2.8153
27 6 8.1033 5.1847 -1.3295
28 8 2.2742 -1.1004 -0.0102
29 1 -0.3633 -0.0001 -1.0277
30 1 -0.3633 -0.8900 0.5138
31 1 -0.3634 0.8899 0.5138
32 1 4.7866 -2.4692 0.0003
33 1 6.9042 -1.2273 0.0091
34 1 6.9120 1.2271 0.0086
35 1 6.7846 3.0566 0.0082
36 1 5.4336 5.3744 0.8916
37 1 5.4422 5.3738 -0.8885
38 1 8.1156 4.0150 1.1645
39 1 7.4128 7.4522 1.0293
40 1 6.6229 7.4786 -0.5798
41 1 9.5531 7.5571 0.1145
42 1 8.7090 8.2402 -1.3032
43 1 12.7301 6.0787 -2.9389
44 1 7.4066 5.2767 -2.1627
45 1 8.5267 4.1808 -1.2971
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754762488.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:53:38
Heat of formation + Delta-G solvation = -31.675344 kcal
Electronic energy + Delta-G solvation = -29836.059994 eV
Core-core repulsion = 25627.318052 eV
Total energy + Delta-G solvation = -4208.741942 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-44.39491 -41.31178 -40.15604 -38.66931 -37.06155 -35.99130 -35.36777 -34.39703
-32.65351 -32.45381 -31.49827 -30.10787 -29.14588 -27.57424 -25.40805 -24.59134
-23.72338 -22.90930 -22.77714 -21.60219 -21.51117 -19.65786 -19.40647 -19.05906
-18.01805 -17.89956 -17.71900 -17.23448 -16.60648 -16.46891 -16.21497 -16.16673
-15.50577 -15.28640 -15.21922 -14.94116 -14.74293 -14.70644 -14.44264 -14.12036
-13.70488 -13.67154 -13.45593 -13.28274 -13.16539 -13.12575 -13.01373 -12.91050
-12.84237 -12.34033 -12.07195 -11.83342 -11.70568 -11.46797 -11.24390 -11.06543
-10.89239 -10.68200 -10.32919 -9.97268 -9.55991 -9.08128 -8.64405 -5.47331
-0.78234 -0.02632 1.29231 1.39670 1.41464 1.49718 1.68086 1.71470
1.88791 2.55002 2.62888 2.76946 3.04418 3.08461 3.22909 3.29270
3.49865 3.65210 3.67840 3.74325 3.78742 3.98494 4.03630 4.21054
4.26475 4.34972 4.54101 4.56844 4.58783 4.61869 4.64965 4.68388
4.75921 4.80471 4.85031 4.89266 5.00430 5.07754 5.10915 5.15611
5.20474 5.21704 5.50205 5.52521 6.09791 6.31720 6.53762 6.70120
6.81525 7.06996 7.43249 8.07570 8.88497
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.021692 B = 0.002340 C = 0.002205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.487867 B =11965.409917 C =12694.907428
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 C 0.251 3.749
3 N -0.511 5.511
4 C 0.041 3.959
5 C -0.025 4.025
6 C -0.054 4.054
7 C -0.093 4.093
8 C -0.068 4.068
9 C -0.116 4.116
10 C 0.555 3.445
11 O -0.556 6.556
12 N -0.712 5.712
13 C 0.118 3.882
14 C 0.123 3.877
15 O -0.548 6.548
16 C -0.109 4.109
17 C 0.104 3.896
18 N -0.628 5.628
19 C -0.307 4.307
20 H 0.050 0.950
21 C -0.081 4.081
22 N -0.965 5.965
23 Si 1.107 2.893
24 H -0.254 1.254
25 H -0.313 1.313
26 H -0.283 1.283
27 C 0.110 3.890
28 O -0.216 6.216
29 H 0.118 0.882
30 H 0.121 0.879
31 H 0.109 0.891
32 H 0.174 0.826
33 H 0.192 0.808
34 H 0.168 0.832
35 H 0.409 0.591
36 H 0.083 0.917
37 H 0.078 0.922
38 H 0.383 0.617
39 H 0.102 0.898
40 H 0.108 0.892
41 H 0.032 0.968
42 H 0.027 0.973
43 H 0.248 0.752
44 H 0.037 0.963
45 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.343 -20.266 9.757 31.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.041 3.959
3 N -0.241 5.241
4 C -0.072 4.072
5 C -0.075 4.075
6 C -0.073 4.073
7 C -0.111 4.111
8 C -0.087 4.087
9 C -0.120 4.120
10 C 0.343 3.657
11 O -0.434 6.434
12 N -0.366 5.366
13 C -0.006 4.006
14 C 0.081 3.919
15 O -0.355 6.355
16 C -0.147 4.147
17 C -0.020 4.020
18 N -0.355 5.355
19 C -0.436 4.436
20 H 0.068 0.932
21 C -0.274 4.274
22 N -0.610 5.610
23 Si 0.936 3.064
24 H -0.180 1.180
25 H -0.243 1.243
26 H -0.211 1.211
27 C -0.015 4.015
28 O -0.108 6.108
29 H 0.136 0.864
30 H 0.139 0.861
31 H 0.128 0.872
32 H 0.191 0.809
33 H 0.210 0.790
34 H 0.186 0.814
35 H 0.247 0.753
36 H 0.101 0.899
37 H 0.096 0.904
38 H 0.233 0.767
39 H 0.121 0.879
40 H 0.126 0.874
41 H 0.050 0.950
42 H 0.044 0.956
43 H 0.057 0.943
44 H 0.055 0.945
45 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -22.760 -17.003 9.733 30.031
hybrid contribution 0.597 -2.990 -0.556 3.099
sum -22.163 -19.993 9.177 31.227
Atomic orbital electron populations
1.20751 0.77268 1.07124 1.06829 1.27766 0.98443 0.77414 0.92299
1.70762 1.01714 1.29995 1.21627 1.19911 0.91840 0.92116 1.03337
1.20696 0.85174 0.93598 1.08001 1.20632 0.86229 1.02363 0.98053
1.21501 0.98795 0.93000 0.97782 1.21737 0.96284 0.95708 0.95009
1.19252 0.91900 0.92208 1.08676 1.18271 0.83584 0.87525 0.76329
1.90823 1.32477 1.70144 1.49983 1.45684 1.08450 1.07153 1.75350
1.21793 0.95641 0.79626 1.03570 1.22423 0.88558 0.95022 0.85915
1.86612 1.75952 1.26333 1.46559 1.22629 0.96592 0.92480 1.02959
1.22074 0.96411 0.90191 0.93368 1.44773 1.19311 1.15791 1.55628
1.20069 0.98038 0.95997 1.29448 0.93162 1.27069 0.94690 1.06644
0.98979 1.70999 1.15284 1.23567 1.51125 0.83408 0.73078 0.72032
0.77928 1.17960 1.24280 1.21065 1.22446 0.90154 0.93354 0.95579
1.84492 1.15131 1.36483 1.74726 0.86418 0.86060 0.87205 0.80889
0.79045 0.81449 0.75283 0.89904 0.90402 0.76737 0.87932 0.87393
0.94954 0.95598 0.94306 0.94502 0.92957
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.54 10.51 71.24 0.75 0.20 16
2 C 0.25 5.14 8.24 88.37 0.73 5.86 16
3 N -0.51 -14.89 10.62 -295.53 -3.14 -18.03 16
4 C 0.04 1.12 6.84 39.71 0.27 1.39 16
5 C -0.02 -0.51 7.42 22.85 0.17 -0.35 16
6 C -0.05 -0.67 10.05 22.35 0.22 -0.45 16
7 C -0.09 -0.88 10.00 22.25 0.22 -0.66 16
8 C -0.07 -0.96 9.53 22.53 0.21 -0.75 16
9 C -0.12 -2.79 5.90 -19.94 -0.12 -2.90 16
10 C 0.55 15.68 7.76 86.66 0.67 16.35 16
11 O -0.56 -20.61 16.07 -4.03 -0.06 -20.68 16
12 N -0.71 -15.85 5.15 -466.36 -2.40 -18.26 16
13 C 0.12 2.94 4.89 86.38 0.42 3.36 16
14 C 0.12 3.53 0.97 -9.33 -0.01 3.52 16
15 O -0.55 -15.47 13.21 -148.98 -1.97 -17.43 16
16 C -0.11 -3.31 6.15 31.78 0.20 -3.12 16
17 C 0.10 4.36 4.61 86.73 0.40 4.76 16
18 N -0.63 -29.93 3.32 -691.57 -2.30 -32.23 16
19 C -0.31 -17.77 10.56 84.03 0.89 -16.88 16
20 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16
21 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16
22 N -0.97 -62.75 13.70 21.65 0.30 -62.45 16
23 Si 1.11 54.76 24.53 68.60 1.68 56.44 16
24 H -0.25 -11.23 5.43 99.48 0.54 -10.69 16
25 H -0.31 -15.98 7.11 99.48 0.71 -15.28 16
26 H -0.28 -13.14 6.84 99.48 0.68 -12.46 16
27 C 0.11 3.99 6.23 86.93 0.54 4.53 16
28 O -0.22 -4.38 10.78 -9.66 -0.10 -4.49 16
29 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16
30 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16
31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16
32 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16
33 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16
34 H 0.17 1.34 6.39 -2.91 -0.02 1.32 16
35 H 0.41 6.66 5.31 -92.71 -0.49 6.17 16
36 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16
37 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16
38 H 0.38 7.48 7.69 -74.06 -0.57 6.91 16
39 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16
40 H 0.11 2.78 8.04 -2.39 -0.02 2.76 16
41 H 0.03 1.47 6.78 -2.38 -0.02 1.46 16
42 H 0.03 1.14 3.82 -2.39 -0.01 1.13 16
43 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16
44 H 0.04 1.34 7.99 -2.39 -0.02 1.32 16
45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
Total: -1.00 -91.90 367.77 -2.19 -94.09
By element:
Atomic # 1 Polarization: 12.81 SS G_CDS: -0.23 Total: 12.58 kcal
Atomic # 6 Polarization: 4.41 SS G_CDS: 6.04 Total: 10.45 kcal
Atomic # 7 Polarization: -123.42 SS G_CDS: -7.54 Total: -130.96 kcal
Atomic # 8 Polarization: -40.46 SS G_CDS: -2.14 Total: -42.60 kcal
Atomic # 14 Polarization: 54.76 SS G_CDS: 1.68 Total: 56.44 kcal
Total: -91.90 -2.19 -94.09 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754762488.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.412 kcal
(2) G-P(sol) polarization free energy of solvation -91.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.485 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.190 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.675 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds