Wall clock time and date at job start Wed Apr 1 2020 04:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 N 1.46503 * 109.47339 * 186.74234 * 3 2 1 5 5 C 1.36866 * 120.00196 * 277.69250 * 4 3 2 6 6 H 1.07997 * 120.00030 * 176.70984 * 5 4 3 7 7 C 1.39047 * 119.99903 * 356.70762 * 5 4 3 8 8 N 1.31363 * 120.00048 * 30.04110 * 7 5 4 9 9 Si 1.86804 * 120.00160 * 210.03470 * 7 5 4 10 10 H 1.48503 * 109.46671 * 90.00131 * 9 7 5 11 11 H 1.48495 * 109.47042 * 210.00106 * 9 7 5 12 12 H 1.48491 * 109.47210 * 330.00530 * 9 7 5 13 13 C 1.34781 * 119.99506 * 97.68638 * 4 3 2 14 14 O 1.21594 * 119.99377 * 186.68312 * 13 4 3 15 15 C 1.47720 * 120.00454 * 6.67989 * 13 4 3 16 16 C 1.39647 * 120.15169 * 132.87944 * 15 13 4 17 17 C 1.37932 * 119.84813 * 179.70237 * 16 15 13 18 18 C 1.38379 * 120.15004 * 0.29780 * 17 16 15 19 19 C 1.50701 * 119.84346 * 179.97438 * 18 17 16 20 20 N 1.46504 * 109.46957 * 90.00283 * 19 18 17 21 21 C 1.34773 * 124.17672 * 89.99898 * 20 19 18 22 22 O 1.21233 * 127.15959 * 359.92373 * 21 20 19 23 23 C 1.51578 * 105.68101 * 179.97438 * 21 20 19 24 24 N 1.47312 * 103.59770 * 359.97438 * 23 21 20 25 25 C 1.33787 * 124.17839 * 269.69264 * 20 19 18 26 26 O 1.21539 * 123.77054 * 0.04445 * 25 20 19 27 27 C 1.38376 * 120.30458 * 0.02562 * 18 17 16 28 28 C 1.37932 * 120.15202 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47431 * 300.00118 * 1 2 3 31 31 H 1.09001 * 109.46771 * 59.99901 * 1 2 3 32 32 H 1.09000 * 109.47231 * 240.00175 * 2 1 3 33 33 H 1.09001 * 109.46771 * 120.00099 * 2 1 3 34 34 H 1.09001 * 109.47269 * 66.74175 * 3 2 1 35 35 H 1.08998 * 109.46970 * 306.74234 * 3 2 1 36 36 H 0.97001 * 120.00086 * 179.97438 * 8 7 5 37 37 H 1.08007 * 120.07451 * 359.97438 * 16 15 13 38 38 H 1.08000 * 119.92564 * 180.28475 * 17 16 15 39 39 H 1.09002 * 109.47024 * 209.99635 * 19 18 17 40 40 H 1.08993 * 109.47575 * 330.00310 * 19 18 17 41 41 H 1.09004 * 110.59717 * 118.52597 * 23 21 20 42 42 H 1.09000 * 110.59801 * 241.46585 * 23 21 20 43 43 H 0.96998 * 126.69033 * 180.02562 * 24 23 21 44 44 H 1.08000 * 119.92188 * 179.97438 * 27 18 17 45 45 H 1.07999 * 120.07198 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4960 1.4457 -0.1622 5 6 4.3059 1.2427 0.9224 6 1 5.3771 1.1920 0.7945 7 6 3.7495 1.1017 2.1888 8 7 2.5502 0.5831 2.3254 9 14 4.7073 1.6494 3.6962 10 1 4.3969 3.0717 3.9899 11 1 4.3239 0.8088 4.8587 12 1 6.1623 1.5035 3.4381 13 6 4.0380 1.6484 -1.3794 14 8 5.2378 1.5310 -1.5379 15 6 3.1744 2.0132 -2.5211 16 6 3.5324 3.0690 -3.3621 17 6 2.7246 3.4004 -4.4298 18 6 1.5586 2.6932 -4.6650 19 6 0.6808 3.0615 -5.8333 20 7 1.0933 2.2982 -7.0137 21 6 0.5960 1.0905 -7.3462 22 8 -0.2443 0.4544 -6.7470 23 6 1.3067 0.6925 -8.6245 24 7 2.2060 1.8290 -8.8890 25 6 2.0061 2.7164 -7.8980 26 8 2.5917 3.7781 -7.8135 27 6 1.1944 1.6502 -3.8317 28 6 1.9930 1.3082 -2.7603 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7786 1.9203 0.9441 35 1 1.5815 1.9899 -0.8235 36 1 2.1622 0.4844 3.2089 37 1 4.4420 3.6220 -3.1794 38 1 3.0025 4.2137 -5.0838 39 1 -0.3573 2.8294 -5.5952 40 1 0.7770 4.1277 -6.0382 41 1 1.8790 -0.2233 -8.4759 42 1 0.5923 0.5716 -9.4388 43 1 2.8199 1.9210 -9.6343 44 1 0.2829 1.1027 -4.0207 45 1 1.7077 0.4937 -2.1110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:02 Heat of formation + Delta-G solvation = -21.854403 kcal Electronic energy + Delta-G solvation = -30569.078572 eV Core-core repulsion = 26360.762498 eV Total energy + Delta-G solvation = -4208.316074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53536 -39.62652 -38.77339 -37.83427 -36.30593 -35.45928 -35.07823 -32.57576 -31.57777 -31.17813 -30.51361 -28.16448 -27.09690 -25.78271 -24.56781 -23.21240 -22.28688 -22.16202 -20.73150 -20.56501 -19.38969 -18.29898 -17.50018 -17.03838 -16.88928 -16.47776 -15.99611 -15.56649 -15.46881 -15.00729 -14.79101 -14.42640 -14.31928 -14.20664 -14.14884 -13.71315 -13.61743 -13.48118 -12.91257 -12.71304 -12.39058 -12.28898 -12.10597 -11.83456 -11.62164 -11.42163 -11.19691 -10.97312 -10.88577 -10.60055 -10.49360 -10.42120 -10.29240 -10.14610 -9.98509 -9.79659 -9.67556 -8.84685 -8.60896 -8.54501 -8.23743 -7.86901 -6.42955 -3.80567 1.22411 1.39195 1.76367 2.11600 2.77906 2.86553 3.11653 3.23010 3.27885 3.67478 3.75605 4.04425 4.28031 4.46577 4.62712 4.72888 4.80228 4.83325 4.98879 5.16027 5.20885 5.37717 5.41613 5.50721 5.57090 5.80730 5.93346 5.97732 6.01933 6.19762 6.23753 6.37975 6.40710 6.43875 6.63998 6.68024 6.71941 6.81877 6.85764 6.86515 6.96653 7.11672 7.24996 7.29481 7.41379 7.86407 7.86519 8.02867 8.45939 9.10779 9.34303 9.93031 10.47837 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002836 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.383659 B = 9871.348706 C =10715.855238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.425 5.425 5 C -0.309 4.309 6 H 0.109 0.891 7 C 0.037 3.963 8 N -0.848 5.848 9 Si 0.916 3.084 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.463 3.537 14 O -0.592 6.592 15 C -0.072 4.072 16 C -0.090 4.090 17 C -0.098 4.098 18 C -0.131 4.131 19 C 0.165 3.835 20 N -0.571 5.571 21 C 0.520 3.480 22 O -0.465 6.465 23 C 0.062 3.938 24 N -0.731 5.731 25 C 0.702 3.298 26 O -0.539 6.539 27 C -0.103 4.103 28 C -0.115 4.115 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.269 0.731 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.440 0.560 44 H 0.123 0.877 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 1.069 -18.427 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C -0.004 4.004 4 N -0.140 5.140 5 C -0.436 4.436 6 H 0.127 0.873 7 C -0.168 4.168 8 N -0.486 5.486 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.253 3.747 14 O -0.479 6.479 15 C -0.076 4.076 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.133 4.133 19 C 0.045 3.955 20 N -0.317 5.317 21 C 0.307 3.693 22 O -0.334 6.334 23 C -0.066 4.066 24 N -0.397 5.397 25 C 0.402 3.598 26 O -0.412 6.412 27 C -0.121 4.121 28 C -0.134 4.134 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.285 0.715 44 H 0.141 0.859 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.925 1.223 -17.814 19.962 hybrid contribution 0.526 0.135 0.423 0.689 sum -8.399 1.358 -17.391 19.360 Atomic orbital electron populations 1.21647 0.97459 1.00150 1.00495 1.22324 0.93653 0.98182 1.03528 1.21737 0.80206 0.97272 1.01160 1.43787 1.05964 1.58037 1.06261 1.19772 0.92321 1.47704 0.83819 0.87336 1.25253 0.96516 0.95839 0.99146 1.70075 1.17299 1.37093 1.24119 0.86082 0.80413 0.78999 0.80264 1.20258 1.21050 1.19284 1.17793 0.87647 0.86673 0.82615 1.90612 1.15103 1.58619 1.83558 1.20381 0.94720 0.95851 0.96655 1.21168 0.99351 0.96351 0.94017 1.20975 0.93789 0.99749 0.97196 1.19890 0.97220 0.98786 0.97366 1.20546 0.98252 0.96450 0.80220 1.46520 1.39142 1.20816 1.25227 1.20899 0.81557 0.80618 0.86258 1.90831 1.29690 1.55797 1.57125 1.22474 0.94635 0.92387 0.97098 1.45422 1.45487 1.19816 1.28942 1.15893 0.79852 0.84069 0.79977 1.91018 1.51450 1.22280 1.76429 1.20978 0.99927 0.96551 0.94685 1.22007 0.93476 1.00488 0.97403 0.93912 0.92892 0.94456 0.94970 0.85660 0.89225 0.93502 0.91992 0.85559 0.85647 0.87970 0.87844 0.85878 0.85996 0.71532 0.85875 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.87 37.16 0.37 -1.98 16 2 C -0.14 -2.87 4.77 -26.73 -0.13 -2.99 16 3 C 0.12 2.65 4.17 -4.04 -0.02 2.63 16 4 N -0.43 -10.88 2.64 -115.93 -0.31 -11.19 16 5 C -0.31 -8.44 9.38 -15.00 -0.14 -8.58 16 6 H 0.11 3.17 7.32 -52.49 -0.38 2.78 16 7 C 0.04 0.92 4.97 -17.45 -0.09 0.84 16 8 N -0.85 -20.56 7.87 55.50 0.44 -20.12 16 9 Si 0.92 19.94 29.65 -169.99 -5.04 14.90 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.46 11.87 7.20 -12.38 -0.09 11.78 16 14 O -0.59 -17.23 16.60 5.28 0.09 -17.14 16 15 C -0.07 -1.52 5.06 -104.97 -0.53 -2.05 16 16 C -0.09 -1.68 9.71 -39.17 -0.38 -2.06 16 17 C -0.10 -1.55 9.68 -39.64 -0.38 -1.93 16 18 C -0.13 -1.87 5.47 -104.52 -0.57 -2.44 16 19 C 0.17 1.83 5.82 -5.19 -0.03 1.80 16 20 N -0.57 -6.11 2.59 -122.02 -0.32 -6.43 16 21 C 0.52 5.01 8.32 -10.55 -0.09 4.92 16 22 O -0.47 -5.75 17.76 5.60 0.10 -5.65 16 23 C 0.06 0.32 7.97 -4.32 -0.03 0.28 16 24 N -0.73 -4.81 6.58 -65.74 -0.43 -5.24 16 25 C 0.70 7.66 8.62 -88.02 -0.76 6.91 16 26 O -0.54 -7.72 17.48 5.33 0.09 -7.62 16 27 C -0.10 -1.58 9.68 -39.64 -0.38 -1.97 16 28 C -0.12 -2.12 7.42 -39.17 -0.29 -2.41 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.67 6.24 -51.93 -0.32 0.34 16 33 H 0.13 2.95 5.48 -51.93 -0.28 2.66 16 34 H 0.09 2.12 6.20 -51.93 -0.32 1.80 16 35 H 0.05 0.96 5.07 -51.93 -0.26 0.69 16 36 H 0.27 6.18 8.31 -40.82 -0.34 5.84 16 37 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 38 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.10 0.99 7.94 -51.93 -0.41 0.57 16 40 H 0.10 1.05 7.79 -51.93 -0.40 0.65 16 41 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.44 1.81 8.96 -40.82 -0.37 1.44 16 44 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.14 2.70 3.78 -52.49 -0.20 2.50 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -33.56 372.59 -8.79 -42.35 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.48 Total: 7.77 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -3.55 Total: 2.75 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.62 Total: -42.98 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: 0.28 Total: -30.41 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.04 Total: 14.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.56 -8.79 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.493 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds