Wall clock time and date at job start Wed Apr 1 2020 04:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 N 1.46503 * 109.47339 * 186.74234 * 3 2 1 5 5 C 1.36866 * 120.00196 * 277.69250 * 4 3 2 6 6 H 1.07997 * 120.00030 * 176.70984 * 5 4 3 7 7 C 1.39047 * 119.99903 * 356.70762 * 5 4 3 8 8 N 1.31363 * 120.00048 * 30.04110 * 7 5 4 9 9 Si 1.86804 * 120.00160 * 210.03470 * 7 5 4 10 10 H 1.48503 * 109.46671 * 90.00131 * 9 7 5 11 11 H 1.48495 * 109.47042 * 210.00106 * 9 7 5 12 12 H 1.48491 * 109.47210 * 330.00530 * 9 7 5 13 13 C 1.34781 * 119.99506 * 97.68638 * 4 3 2 14 14 O 1.21594 * 119.99377 * 186.68312 * 13 4 3 15 15 C 1.47720 * 120.00454 * 6.67989 * 13 4 3 16 16 C 1.39647 * 120.15169 * 132.87944 * 15 13 4 17 17 C 1.37932 * 119.84813 * 179.70237 * 16 15 13 18 18 C 1.38379 * 120.15004 * 0.29780 * 17 16 15 19 19 C 1.50701 * 119.84346 * 179.97438 * 18 17 16 20 20 N 1.46504 * 109.46957 * 90.00283 * 19 18 17 21 21 C 1.34773 * 124.17672 * 89.99898 * 20 19 18 22 22 O 1.21233 * 127.15959 * 359.92373 * 21 20 19 23 23 C 1.51578 * 105.68101 * 179.97438 * 21 20 19 24 24 N 1.47312 * 103.59770 * 359.97438 * 23 21 20 25 25 C 1.33787 * 124.17839 * 269.69264 * 20 19 18 26 26 O 1.21539 * 123.77054 * 0.04445 * 25 20 19 27 27 C 1.38376 * 120.30458 * 0.02562 * 18 17 16 28 28 C 1.37932 * 120.15202 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47431 * 300.00118 * 1 2 3 31 31 H 1.09001 * 109.46771 * 59.99901 * 1 2 3 32 32 H 1.09000 * 109.47231 * 240.00175 * 2 1 3 33 33 H 1.09001 * 109.46771 * 120.00099 * 2 1 3 34 34 H 1.09001 * 109.47269 * 66.74175 * 3 2 1 35 35 H 1.08998 * 109.46970 * 306.74234 * 3 2 1 36 36 H 0.97001 * 120.00086 * 179.97438 * 8 7 5 37 37 H 1.08007 * 120.07451 * 359.97438 * 16 15 13 38 38 H 1.08000 * 119.92564 * 180.28475 * 17 16 15 39 39 H 1.09002 * 109.47024 * 209.99635 * 19 18 17 40 40 H 1.08993 * 109.47575 * 330.00310 * 19 18 17 41 41 H 1.09004 * 110.59717 * 118.52597 * 23 21 20 42 42 H 1.09000 * 110.59801 * 241.46585 * 23 21 20 43 43 H 0.96998 * 126.69033 * 180.02562 * 24 23 21 44 44 H 1.08000 * 119.92188 * 179.97438 * 27 18 17 45 45 H 1.07999 * 120.07198 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4960 1.4457 -0.1622 5 6 4.3059 1.2427 0.9224 6 1 5.3771 1.1920 0.7945 7 6 3.7495 1.1017 2.1888 8 7 2.5502 0.5831 2.3254 9 14 4.7073 1.6494 3.6962 10 1 4.3969 3.0717 3.9899 11 1 4.3239 0.8088 4.8587 12 1 6.1623 1.5035 3.4381 13 6 4.0380 1.6484 -1.3794 14 8 5.2378 1.5310 -1.5379 15 6 3.1744 2.0132 -2.5211 16 6 3.5324 3.0690 -3.3621 17 6 2.7246 3.4004 -4.4298 18 6 1.5586 2.6932 -4.6650 19 6 0.6808 3.0615 -5.8333 20 7 1.0933 2.2982 -7.0137 21 6 0.5960 1.0905 -7.3462 22 8 -0.2443 0.4544 -6.7470 23 6 1.3067 0.6925 -8.6245 24 7 2.2060 1.8290 -8.8890 25 6 2.0061 2.7164 -7.8980 26 8 2.5917 3.7781 -7.8135 27 6 1.1944 1.6502 -3.8317 28 6 1.9930 1.3082 -2.7603 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7786 1.9203 0.9441 35 1 1.5815 1.9899 -0.8235 36 1 2.1622 0.4844 3.2089 37 1 4.4420 3.6220 -3.1794 38 1 3.0025 4.2137 -5.0838 39 1 -0.3573 2.8294 -5.5952 40 1 0.7770 4.1277 -6.0382 41 1 1.8790 -0.2233 -8.4759 42 1 0.5923 0.5716 -9.4388 43 1 2.8199 1.9210 -9.6343 44 1 0.2829 1.1027 -4.0207 45 1 1.7077 0.4937 -2.1110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:01 Heat of formation + Delta-G solvation = -44.557731 kcal Electronic energy + Delta-G solvation = -30570.063063 eV Core-core repulsion = 26360.762498 eV Total energy + Delta-G solvation = -4209.300564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.27764 -41.26757 -39.59242 -39.40168 -37.38936 -37.11700 -35.99008 -34.31612 -33.35484 -32.52123 -31.91520 -28.95248 -28.22471 -27.40242 -26.28680 -24.10412 -23.63262 -23.40306 -22.39171 -21.49017 -21.02577 -19.02537 -18.93864 -18.36391 -18.21348 -17.67350 -17.24572 -16.63963 -16.43961 -16.40513 -16.19334 -15.99817 -15.63577 -15.31039 -15.23957 -15.20562 -14.95272 -14.58980 -14.22274 -14.03936 -13.91978 -13.78793 -13.48499 -13.24841 -13.16252 -12.96696 -12.65349 -12.54917 -12.17199 -12.12308 -12.08721 -12.02905 -11.81274 -11.40204 -11.28460 -10.93380 -10.75733 -10.48401 -10.36618 -9.98933 -9.81773 -9.72352 -8.36985 -5.86556 -0.10996 0.38508 0.68071 1.26307 1.37136 1.41305 1.51318 1.96070 1.99231 2.22846 2.33873 2.73890 2.89690 3.07420 3.11966 3.64991 3.70334 3.88292 3.98924 4.02248 4.33390 4.34577 4.34910 4.35397 4.46357 4.53550 4.55917 4.60203 4.67098 4.76479 4.80684 4.90396 5.02174 5.06361 5.21472 5.27999 5.33356 5.42385 5.45700 5.49540 5.60175 5.87818 5.90250 5.99502 6.07256 6.08177 6.43039 6.50972 7.11053 7.14903 7.37983 7.96992 8.50773 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002836 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.383659 B = 9871.348706 C =10715.855238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.126 3.874 4 N -0.431 5.431 5 C -0.362 4.362 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.842 5.842 9 Si 0.978 3.022 10 H -0.270 1.270 11 H -0.266 1.266 12 H -0.281 1.281 13 C 0.446 3.554 14 O -0.647 6.647 15 C -0.102 4.102 16 C -0.100 4.100 17 C -0.090 4.090 18 C -0.109 4.109 19 C 0.164 3.836 20 N -0.577 5.577 21 C 0.513 3.487 22 O -0.495 6.495 23 C 0.071 3.929 24 N -0.713 5.713 25 C 0.694 3.306 26 O -0.580 6.580 27 C -0.092 4.092 28 C -0.117 4.117 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.026 0.974 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.279 0.721 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.453 0.547 44 H 0.149 0.851 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.129 0.724 -20.323 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.003 3.997 4 N -0.146 5.146 5 C -0.489 4.489 6 H 0.090 0.910 7 C -0.188 4.188 8 N -0.478 5.478 9 Si 0.802 3.198 10 H -0.195 1.195 11 H -0.191 1.191 12 H -0.206 1.206 13 C 0.238 3.762 14 O -0.538 6.538 15 C -0.106 4.106 16 C -0.119 4.119 17 C -0.109 4.109 18 C -0.111 4.111 19 C 0.043 3.957 20 N -0.322 5.322 21 C 0.302 3.698 22 O -0.366 6.366 23 C -0.055 4.055 24 N -0.378 5.378 25 C 0.394 3.606 26 O -0.457 6.457 27 C -0.110 4.110 28 C -0.135 4.135 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.159 0.841 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.165 0.835 42 H 0.180 0.820 43 H 0.300 0.700 44 H 0.167 0.833 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.942 0.834 -19.737 23.083 hybrid contribution 1.372 0.203 0.928 1.669 sum -10.569 1.038 -18.808 21.599 Atomic orbital electron populations 1.21557 0.94030 1.01651 1.01485 1.22143 0.96522 0.96452 1.01754 1.21789 0.78494 0.98516 1.00871 1.43992 1.07192 1.57402 1.05975 1.19571 0.91337 1.52234 0.85766 0.90955 1.25878 0.97747 0.94599 1.00559 1.70161 1.17450 1.34908 1.25264 0.85192 0.78416 0.78908 0.77329 1.19534 1.19100 1.20602 1.18580 0.87712 0.86179 0.83767 1.90536 1.17566 1.60984 1.84689 1.20075 0.95903 0.98316 0.96291 1.21165 0.99690 0.96171 0.94920 1.21100 0.93688 1.00080 0.95991 1.20257 0.96371 0.96904 0.97537 1.20596 0.98394 0.97409 0.79259 1.46541 1.39336 1.21391 1.24938 1.21603 0.81095 0.79784 0.87284 1.90822 1.31066 1.56299 1.58405 1.22726 0.94873 0.92051 0.95839 1.45409 1.45244 1.19158 1.27993 1.16097 0.79653 0.84131 0.80703 1.90995 1.52988 1.24169 1.77514 1.21182 0.99985 0.96529 0.93289 1.21935 0.92920 1.00134 0.98538 0.92172 0.92928 0.92380 0.95572 0.88559 0.90874 0.91675 0.91029 0.86889 0.84062 0.85872 0.86751 0.83492 0.81986 0.70009 0.83302 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.87 71.98 0.71 -3.38 16 2 C -0.13 -5.41 4.77 30.59 0.15 -5.27 16 3 C 0.13 5.70 4.17 86.38 0.36 6.06 16 4 N -0.43 -23.40 2.64 -638.95 -1.68 -25.08 16 5 C -0.36 -21.06 9.38 84.10 0.79 -20.27 16 6 H 0.07 4.62 7.32 -2.91 -0.02 4.60 16 7 C 0.02 0.92 4.97 84.96 0.42 1.34 16 8 N -0.84 -41.13 7.87 21.68 0.17 -40.96 16 9 Si 0.98 41.67 29.65 68.60 2.03 43.71 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.45 24.51 7.20 86.75 0.62 25.13 16 14 O -0.65 -40.87 16.60 -4.01 -0.07 -40.93 16 15 C -0.10 -4.48 5.06 -20.09 -0.10 -4.58 16 16 C -0.10 -3.89 9.71 22.54 0.22 -3.67 16 17 C -0.09 -2.75 9.68 22.23 0.22 -2.54 16 18 C -0.11 -2.87 5.47 -19.80 -0.11 -2.98 16 19 C 0.16 3.13 5.82 85.63 0.50 3.63 16 20 N -0.58 -10.59 2.59 -777.22 -2.01 -12.60 16 21 C 0.51 8.08 8.32 87.94 0.73 8.81 16 22 O -0.49 -10.61 17.76 -2.88 -0.05 -10.67 16 23 C 0.07 0.41 7.97 85.76 0.68 1.09 16 24 N -0.71 -6.87 6.58 -480.32 -3.16 -10.03 16 25 C 0.69 13.38 8.62 179.44 1.55 14.92 16 26 O -0.58 -15.71 17.48 -3.84 -0.07 -15.78 16 27 C -0.09 -2.61 9.68 22.23 0.22 -2.39 16 28 C -0.12 -4.26 7.42 22.54 0.17 -4.09 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.10 6.24 -2.39 -0.01 1.09 16 33 H 0.10 4.60 5.48 -2.39 -0.01 4.59 16 34 H 0.07 3.52 6.20 -2.39 -0.01 3.51 16 35 H 0.07 2.69 5.07 -2.39 -0.01 2.67 16 36 H 0.28 12.56 8.31 -92.71 -0.77 11.79 16 37 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 39 H 0.12 1.89 7.94 -2.39 -0.02 1.87 16 40 H 0.11 2.00 7.79 -2.39 -0.02 1.98 16 41 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.45 2.19 8.96 -92.71 -0.83 1.36 16 44 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 45 H 0.14 5.16 3.78 -2.91 -0.01 5.15 16 Total: -1.00 -79.63 372.59 2.51 -77.12 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.23 Total: 23.39 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 7.12 Total: 11.83 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -6.69 Total: -88.68 kcal Atomic # 8 Polarization: -67.19 SS G_CDS: -0.18 Total: -67.37 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.71 kcal Total: -79.63 2.51 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.564 kcal (2) G-P(sol) polarization free energy of solvation -79.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds