Wall clock time and date at job start Wed Apr 1 2020 04:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47372 * 2 1 4 4 N 1.46498 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.36735 * 120.00219 * 264.65661 * 4 3 2 6 6 H 1.07999 * 119.99902 * 138.46366 * 5 4 3 7 7 C 1.39145 * 119.99882 * 318.46420 * 5 4 3 8 8 N 1.31304 * 119.99711 * 161.29078 * 7 5 4 9 9 Si 1.86793 * 120.00145 * 341.28994 * 7 5 4 10 10 H 1.48500 * 109.46943 * 93.92052 * 9 7 5 11 11 H 1.48504 * 109.47498 * 213.92108 * 9 7 5 12 12 H 1.48500 * 109.47022 * 333.92214 * 9 7 5 13 13 C 1.34780 * 119.99637 * 84.66137 * 4 3 2 14 14 O 1.21578 * 120.00292 * 5.22286 * 13 4 3 15 15 C 1.47893 * 119.99680 * 185.22088 * 13 4 3 16 16 C 1.39876 * 119.84851 * 143.07943 * 15 13 4 17 17 C 1.36698 * 120.40877 * 180.25657 * 16 15 13 18 18 C 1.39343 * 119.83741 * 359.74590 * 17 16 15 19 19 C 1.40593 * 120.26014 * 0.02562 * 18 17 16 20 20 C 1.38532 * 119.68693 * 359.97438 * 19 18 17 21 21 N 1.38792 * 118.79255 * 179.97438 * 19 18 17 22 22 H 0.96999 * 119.67307 * 180.02562 * 21 19 18 23 23 C 1.34404 * 120.65562 * 0.02562 * 21 19 18 24 24 O 1.21579 * 118.59359 * 179.97438 * 23 21 19 25 25 N 1.34213 * 122.81562 * 359.97438 * 23 21 19 26 26 C 1.46494 * 119.35553 * 180.02562 * 25 23 21 27 27 C 1.52998 * 109.47628 * 269.98337 * 26 25 23 28 28 C 1.35056 * 121.28767 * 0.02562 * 25 23 21 29 29 O 1.21580 * 120.84827 * 180.02562 * 28 25 23 30 30 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46750 * 300.00337 * 1 2 3 32 32 H 1.08998 * 109.46684 * 60.00034 * 1 2 3 33 33 H 1.09005 * 109.47016 * 239.99730 * 2 1 3 34 34 H 1.09005 * 109.47334 * 120.00008 * 2 1 3 35 35 H 1.09002 * 109.46782 * 60.00023 * 3 2 1 36 36 H 1.09001 * 109.46461 * 299.99677 * 3 2 1 37 37 H 0.96997 * 119.99520 * 179.97438 * 8 7 5 38 38 H 1.08007 * 119.79684 * 0.02562 * 16 15 13 39 39 H 1.08002 * 120.08115 * 179.72271 * 17 16 15 40 40 H 1.08005 * 120.24486 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47129 * 29.98799 * 26 25 23 42 42 H 1.09004 * 109.47211 * 149.98168 * 26 25 23 43 43 H 1.09004 * 109.46963 * 59.99679 * 27 26 25 44 44 H 1.08999 * 109.47296 * 180.02562 * 27 26 25 45 45 H 1.08995 * 109.46839 * 299.99956 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1883 1.5528 1.1799 6 1 5.0645 0.9462 1.3551 7 6 3.7547 2.4466 2.1541 8 7 4.1558 2.3088 3.3967 9 14 2.6020 3.8427 1.6941 10 1 1.1971 3.4217 1.9270 11 1 2.9071 5.0322 2.5292 12 1 2.7854 4.1841 0.2606 13 6 4.1794 1.3336 -1.1613 14 8 3.5757 1.3311 -2.2166 15 6 5.6537 1.2172 -1.1525 16 6 6.2923 0.3903 -2.0825 17 6 7.6540 0.2702 -2.0813 18 6 8.4117 0.9795 -1.1516 19 6 7.7812 1.8173 -0.2150 20 6 6.4010 1.9357 -0.2203 21 7 8.5654 2.5092 0.6975 22 1 8.1437 3.0905 1.3495 23 6 9.9033 2.3818 0.6867 24 8 10.5539 3.0056 1.5026 25 7 10.5520 1.5954 -0.1863 26 6 12.0135 1.5126 -0.1298 27 6 12.6208 2.5883 -1.0325 28 6 9.8837 0.8790 -1.1159 29 8 10.4795 0.1688 -1.9026 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9562 -0.8901 37 1 3.8538 2.9321 4.0758 38 1 5.7057 -0.1595 -2.8037 39 1 8.1413 -0.3732 -2.7989 40 1 5.9072 2.5765 0.4954 41 1 12.3469 1.6686 0.8962 42 1 12.3352 0.5284 -0.4705 43 1 12.2991 3.5725 -0.6918 44 1 13.7082 2.5263 -0.9908 45 1 12.2875 2.4321 -2.0585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:40 Heat of formation + Delta-G solvation = -56.781613 kcal Electronic energy + Delta-G solvation = -30839.497349 eV Core-core repulsion = 26629.666718 eV Total energy + Delta-G solvation = -4209.830632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11489 -39.75631 -38.92283 -38.20809 -35.73141 -35.42010 -35.11245 -33.33487 -32.07823 -31.63455 -30.48764 -29.55499 -26.48559 -25.61799 -24.58836 -23.99939 -22.80769 -22.40525 -21.42082 -20.16972 -19.06149 -18.63970 -18.07561 -17.08685 -16.76964 -16.45356 -16.14019 -15.57023 -15.39462 -15.03362 -14.61454 -14.42208 -14.27693 -14.18702 -13.95129 -13.70969 -13.64079 -13.39692 -13.24753 -12.81993 -12.67536 -12.49383 -12.33932 -12.20338 -11.79842 -11.67001 -11.30040 -11.23450 -11.12881 -11.02835 -10.82662 -10.77002 -10.58186 -10.29044 -10.22915 -9.96807 -9.85257 -9.50060 -8.95780 -8.74519 -8.13258 -7.94851 -6.74006 -4.37433 0.64413 1.39570 2.12010 2.15766 2.82035 2.92486 3.06780 3.10352 3.12586 3.55046 3.88769 3.97555 4.16736 4.27357 4.66038 4.78636 4.87949 4.99468 5.09408 5.19710 5.36927 5.40230 5.46682 5.48261 5.51494 5.60319 5.66608 5.74886 5.77038 5.90414 5.97895 6.00051 6.03821 6.18705 6.22186 6.28900 6.32116 6.47086 6.60882 6.72007 6.74601 6.74994 6.91467 7.12038 7.31164 7.45466 7.78621 7.96710 8.00126 8.63160 9.02241 9.36780 10.33207 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.003579 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.608025 B = 7821.635541 C = 9133.207412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.448 5.448 5 C -0.358 4.358 6 H 0.111 0.889 7 C 0.071 3.929 8 N -0.846 5.846 9 Si 0.871 3.129 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.258 1.258 13 C 0.511 3.489 14 O -0.584 6.584 15 C -0.022 4.022 16 C -0.114 4.114 17 C -0.034 4.034 18 C -0.195 4.195 19 C 0.179 3.821 20 C -0.105 4.105 21 N -0.638 5.638 22 H 0.438 0.562 23 C 0.706 3.294 24 O -0.552 6.552 25 N -0.558 5.558 26 C 0.107 3.893 27 C -0.165 4.165 28 C 0.567 3.433 29 O -0.502 6.502 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.280 0.720 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.175 0.825 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.317 -0.937 -4.692 7.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.023 4.023 4 N -0.166 5.166 5 C -0.484 4.484 6 H 0.128 0.872 7 C -0.139 4.139 8 N -0.479 5.479 9 Si 0.698 3.302 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.181 1.181 13 C 0.301 3.699 14 O -0.469 6.469 15 C -0.027 4.027 16 C -0.134 4.134 17 C -0.053 4.053 18 C -0.202 4.202 19 C 0.080 3.920 20 C -0.126 4.126 21 N -0.284 5.284 22 H 0.280 0.720 23 C 0.407 3.593 24 O -0.427 6.427 25 N -0.303 5.303 26 C -0.014 4.014 27 C -0.223 4.223 28 C 0.360 3.640 29 O -0.376 6.376 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.192 0.808 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.839 -0.964 -4.983 8.517 hybrid contribution -0.879 0.947 0.520 1.393 sum 5.960 -0.017 -4.463 7.446 Atomic orbital electron populations 1.21704 0.96128 1.01236 1.01481 1.21770 0.95065 0.97603 1.02583 1.21758 0.81939 0.97044 1.01558 1.43580 1.04304 1.62808 1.05922 1.19202 1.14132 1.23492 0.91622 0.87179 1.25389 0.96721 0.97244 0.94545 1.69687 1.42563 1.35408 1.00280 0.86988 0.80998 0.82095 0.80160 1.19659 1.21043 1.18149 1.18195 0.86305 0.81500 0.83939 1.90675 1.69383 1.55855 1.30953 1.20053 0.94433 0.94649 0.93527 1.20893 0.93754 0.99565 0.99225 1.20501 0.92991 0.96059 0.95732 1.19437 0.91562 1.06480 1.02672 1.17989 0.91630 0.92758 0.89657 1.21693 0.89295 1.01836 0.99814 1.42743 1.04340 1.46391 1.34950 0.72007 1.15559 0.81845 0.80334 0.81532 1.91015 1.64072 1.47984 1.39592 1.46217 1.10215 1.42398 1.31466 1.21699 0.75419 1.01477 1.02831 1.22075 1.01281 0.99034 0.99947 1.18554 0.87631 0.78360 0.79415 1.90778 1.70355 1.37888 1.38555 0.92895 0.92942 0.92920 0.91897 0.91242 0.91083 0.91231 0.90980 0.84445 0.84089 0.80779 0.88298 0.88468 0.91945 0.90678 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.13 -2.30 6.22 -26.73 -0.17 -2.46 16 3 C 0.10 1.98 3.97 -4.04 -0.02 1.97 16 4 N -0.45 -9.58 2.12 -115.88 -0.25 -9.82 16 5 C -0.36 -7.99 6.65 -15.03 -0.10 -8.09 16 6 H 0.11 2.59 6.56 -52.49 -0.34 2.25 16 7 C 0.07 1.62 5.30 -17.44 -0.09 1.53 16 8 N -0.85 -20.47 13.95 55.51 0.77 -19.70 16 9 Si 0.87 18.16 25.05 -169.99 -4.26 13.91 16 10 H -0.27 -5.49 6.68 56.52 0.38 -5.11 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 13 C 0.51 10.79 7.30 -12.31 -0.09 10.70 16 14 O -0.58 -13.36 16.48 5.30 0.09 -13.28 16 15 C -0.02 -0.41 5.43 -104.89 -0.57 -0.98 16 16 C -0.11 -1.82 9.54 -39.53 -0.38 -2.19 16 17 C -0.03 -0.49 9.60 -39.73 -0.38 -0.87 16 18 C -0.20 -3.01 5.89 -104.79 -0.62 -3.63 16 19 C 0.18 2.81 6.66 -83.71 -0.56 2.25 16 20 C -0.11 -1.82 7.64 -39.03 -0.30 -2.12 16 21 N -0.64 -9.36 5.35 -14.39 -0.08 -9.44 16 22 H 0.44 5.91 8.79 -40.82 -0.36 5.55 16 23 C 0.71 10.79 8.33 -87.76 -0.73 10.06 16 24 O -0.55 -9.34 16.49 5.30 0.09 -9.25 16 25 N -0.56 -7.97 2.55 -122.04 -0.31 -8.28 16 26 C 0.11 1.24 5.76 -4.05 -0.02 1.22 16 27 C -0.17 -1.69 10.23 37.16 0.38 -1.31 16 28 C 0.57 8.69 7.65 -12.32 -0.09 8.59 16 29 O -0.50 -8.22 16.16 5.30 0.09 -8.13 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.44 3.79 -51.93 -0.20 1.24 16 36 H 0.07 1.39 7.52 -51.93 -0.39 1.00 16 37 H 0.28 6.39 8.31 -40.82 -0.34 6.06 16 38 H 0.14 2.04 8.01 -52.48 -0.42 1.62 16 39 H 0.14 1.79 7.79 -52.49 -0.41 1.38 16 40 H 0.18 3.21 5.81 -52.48 -0.30 2.91 16 41 H 0.10 1.10 7.30 -51.93 -0.38 0.72 16 42 H 0.10 1.05 7.41 -51.93 -0.38 0.67 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -27.42 371.56 -7.35 -34.77 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.73 Total: 10.70 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -3.37 Total: 12.92 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.14 Total: -47.23 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: 0.26 Total: -30.65 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -4.26 Total: 13.91 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.42 -7.35 -34.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.012 kcal (2) G-P(sol) polarization free energy of solvation -27.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds