Wall clock time and date at job start Wed Apr 1 2020 04:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47372 * 2 1 4 4 N 1.46498 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.36735 * 120.00219 * 264.65661 * 4 3 2 6 6 H 1.07999 * 119.99902 * 138.46366 * 5 4 3 7 7 C 1.39145 * 119.99882 * 318.46420 * 5 4 3 8 8 N 1.31304 * 119.99711 * 161.29078 * 7 5 4 9 9 Si 1.86793 * 120.00145 * 341.28994 * 7 5 4 10 10 H 1.48500 * 109.46943 * 93.92052 * 9 7 5 11 11 H 1.48504 * 109.47498 * 213.92108 * 9 7 5 12 12 H 1.48500 * 109.47022 * 333.92214 * 9 7 5 13 13 C 1.34780 * 119.99637 * 84.66137 * 4 3 2 14 14 O 1.21578 * 120.00292 * 5.22286 * 13 4 3 15 15 C 1.47893 * 119.99680 * 185.22088 * 13 4 3 16 16 C 1.39876 * 119.84851 * 143.07943 * 15 13 4 17 17 C 1.36698 * 120.40877 * 180.25657 * 16 15 13 18 18 C 1.39343 * 119.83741 * 359.74590 * 17 16 15 19 19 C 1.40593 * 120.26014 * 0.02562 * 18 17 16 20 20 C 1.38532 * 119.68693 * 359.97438 * 19 18 17 21 21 N 1.38792 * 118.79255 * 179.97438 * 19 18 17 22 22 H 0.96999 * 119.67307 * 180.02562 * 21 19 18 23 23 C 1.34404 * 120.65562 * 0.02562 * 21 19 18 24 24 O 1.21579 * 118.59359 * 179.97438 * 23 21 19 25 25 N 1.34213 * 122.81562 * 359.97438 * 23 21 19 26 26 C 1.46494 * 119.35553 * 180.02562 * 25 23 21 27 27 C 1.52998 * 109.47628 * 269.98337 * 26 25 23 28 28 C 1.35056 * 121.28767 * 0.02562 * 25 23 21 29 29 O 1.21580 * 120.84827 * 180.02562 * 28 25 23 30 30 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46750 * 300.00337 * 1 2 3 32 32 H 1.08998 * 109.46684 * 60.00034 * 1 2 3 33 33 H 1.09005 * 109.47016 * 239.99730 * 2 1 3 34 34 H 1.09005 * 109.47334 * 120.00008 * 2 1 3 35 35 H 1.09002 * 109.46782 * 60.00023 * 3 2 1 36 36 H 1.09001 * 109.46461 * 299.99677 * 3 2 1 37 37 H 0.96997 * 119.99520 * 179.97438 * 8 7 5 38 38 H 1.08007 * 119.79684 * 0.02562 * 16 15 13 39 39 H 1.08002 * 120.08115 * 179.72271 * 17 16 15 40 40 H 1.08005 * 120.24486 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47129 * 29.98799 * 26 25 23 42 42 H 1.09004 * 109.47211 * 149.98168 * 26 25 23 43 43 H 1.09004 * 109.46963 * 59.99679 * 27 26 25 44 44 H 1.08999 * 109.47296 * 180.02562 * 27 26 25 45 45 H 1.08995 * 109.46839 * 299.99956 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1883 1.5528 1.1799 6 1 5.0645 0.9462 1.3551 7 6 3.7547 2.4466 2.1541 8 7 4.1558 2.3088 3.3967 9 14 2.6020 3.8427 1.6941 10 1 1.1971 3.4217 1.9270 11 1 2.9071 5.0322 2.5292 12 1 2.7854 4.1841 0.2606 13 6 4.1794 1.3336 -1.1613 14 8 3.5757 1.3311 -2.2166 15 6 5.6537 1.2172 -1.1525 16 6 6.2923 0.3903 -2.0825 17 6 7.6540 0.2702 -2.0813 18 6 8.4117 0.9795 -1.1516 19 6 7.7812 1.8173 -0.2150 20 6 6.4010 1.9357 -0.2203 21 7 8.5654 2.5092 0.6975 22 1 8.1437 3.0905 1.3495 23 6 9.9033 2.3818 0.6867 24 8 10.5539 3.0056 1.5026 25 7 10.5520 1.5954 -0.1863 26 6 12.0135 1.5126 -0.1298 27 6 12.6208 2.5883 -1.0325 28 6 9.8837 0.8790 -1.1159 29 8 10.4795 0.1688 -1.9026 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9562 -0.8901 37 1 3.8538 2.9321 4.0758 38 1 5.7057 -0.1595 -2.8037 39 1 8.1413 -0.3732 -2.7989 40 1 5.9072 2.5765 0.4954 41 1 12.3469 1.6686 0.8962 42 1 12.3352 0.5284 -0.4705 43 1 12.2991 3.5725 -0.6918 44 1 13.7082 2.5263 -0.9908 45 1 12.2875 2.4321 -2.0585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:39 Heat of formation + Delta-G solvation = -71.784277 kcal Electronic energy + Delta-G solvation = -30840.147914 eV Core-core repulsion = 26629.666718 eV Total energy + Delta-G solvation = -4210.481196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.34499 -41.28154 -40.19422 -39.59702 -37.30918 -36.66106 -36.43256 -34.84335 -33.70050 -32.84305 -31.64609 -30.85253 -27.87765 -27.24269 -25.92270 -25.20405 -23.97142 -23.68247 -22.79739 -21.63053 -20.50461 -19.91842 -19.46647 -18.51923 -18.07095 -17.91736 -17.42188 -17.18139 -16.60352 -16.42868 -16.16986 -15.82982 -15.58179 -15.50924 -15.31137 -15.02479 -14.78905 -14.71229 -14.55820 -14.38491 -14.09891 -13.67124 -13.62613 -13.31780 -13.21046 -13.18096 -12.60435 -12.59285 -12.48339 -12.19907 -12.12399 -12.04094 -11.99404 -11.92088 -11.54735 -11.50143 -11.17982 -10.99830 -10.63098 -10.13482 -9.76553 -9.31392 -8.52290 -6.16949 -0.68092 0.11395 0.86674 0.97484 1.19355 1.34028 1.43190 1.54523 1.87275 2.06730 2.16869 2.45516 2.71801 2.92336 3.07226 3.50730 3.77973 3.93853 4.02850 4.08977 4.12318 4.13723 4.16351 4.21563 4.29798 4.41006 4.45637 4.56852 4.60455 4.64453 4.72055 4.85651 4.90689 4.93953 5.04384 5.12708 5.17226 5.19993 5.24677 5.29388 5.40401 5.47871 5.50779 5.63641 6.03268 6.07753 6.19741 6.22149 6.78175 6.87796 7.29753 7.66018 8.57928 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.003579 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.608025 B = 7821.635541 C = 9133.207412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.093 3.907 4 N -0.458 5.458 5 C -0.346 4.346 6 H 0.094 0.906 7 C 0.045 3.955 8 N -0.880 5.880 9 Si 0.911 3.089 10 H -0.259 1.259 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.510 3.490 14 O -0.604 6.604 15 C -0.045 4.045 16 C -0.108 4.108 17 C -0.019 4.019 18 C -0.196 4.196 19 C 0.184 3.816 20 C -0.107 4.107 21 N -0.634 5.634 22 H 0.442 0.558 23 C 0.707 3.293 24 O -0.567 6.567 25 N -0.556 5.556 26 C 0.099 3.901 27 C -0.159 4.159 28 C 0.571 3.429 29 O -0.509 6.509 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.282 0.718 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.050 0.950 44 H 0.102 0.898 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 -1.442 -5.609 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C -0.029 4.029 4 N -0.177 5.177 5 C -0.473 4.473 6 H 0.112 0.888 7 C -0.161 4.161 8 N -0.515 5.515 9 Si 0.736 3.264 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.300 3.700 14 O -0.490 6.490 15 C -0.049 4.049 16 C -0.128 4.128 17 C -0.038 4.038 18 C -0.202 4.202 19 C 0.084 3.916 20 C -0.128 4.128 21 N -0.280 5.280 22 H 0.284 0.716 23 C 0.409 3.591 24 O -0.443 6.443 25 N -0.300 5.300 26 C -0.021 4.021 27 C -0.217 4.217 28 C 0.364 3.636 29 O -0.383 6.383 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.167 0.833 39 H 0.185 0.815 40 H 0.177 0.823 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.069 0.931 44 H 0.121 0.879 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.421 -1.469 -5.894 9.590 hybrid contribution -0.950 1.066 0.736 1.606 sum 6.471 -0.403 -5.159 8.285 Atomic orbital electron populations 1.21681 0.93398 1.02863 1.02076 1.21702 0.97430 0.95594 1.01634 1.21883 0.81223 0.98674 1.01136 1.43700 1.05014 1.63216 1.05724 1.19002 1.13681 1.22898 0.91712 0.88816 1.25716 0.97718 0.98355 0.94353 1.69732 1.44324 1.36474 1.00999 0.86368 0.80495 0.80402 0.79099 1.18509 1.20979 1.19208 1.18605 0.87497 0.80431 0.83453 1.90645 1.70281 1.56627 1.31479 1.19988 0.93038 0.96620 0.95277 1.20995 0.94366 0.98905 0.98545 1.20725 0.92279 0.95389 0.95418 1.19648 0.92059 1.06023 1.02486 1.17872 0.91033 0.92792 0.89854 1.21412 0.89939 1.01958 0.99502 1.42731 1.04300 1.46193 1.34781 0.71565 1.15596 0.81743 0.80270 0.81487 1.91007 1.64343 1.48705 1.40292 1.46308 1.11300 1.41657 1.30749 1.21985 0.73829 1.02624 1.03618 1.22039 1.02930 0.97768 0.98930 1.18446 0.87400 0.78314 0.79454 1.90780 1.70440 1.38251 1.38873 0.90797 0.92573 0.92097 0.92594 0.92334 0.91504 0.91455 0.90777 0.83321 0.81537 0.82335 0.87834 0.87395 0.93071 0.87939 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.08 16 2 C -0.13 -4.30 6.22 30.60 0.19 -4.10 16 3 C 0.09 3.69 3.97 86.38 0.34 4.04 16 4 N -0.46 -19.77 2.12 -638.79 -1.35 -21.12 16 5 C -0.35 -15.72 6.65 84.15 0.56 -15.16 16 6 H 0.09 4.54 6.56 -2.91 -0.02 4.52 16 7 C 0.05 2.10 5.30 84.99 0.45 2.55 16 8 N -0.88 -43.18 13.95 21.70 0.30 -42.87 16 9 Si 0.91 37.40 25.05 68.60 1.72 39.12 16 10 H -0.26 -10.13 6.68 99.48 0.66 -9.47 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 13 C 0.51 21.64 7.30 86.80 0.63 22.28 16 14 O -0.60 -27.62 16.48 -3.96 -0.07 -27.69 16 15 C -0.05 -1.65 5.43 -20.04 -0.11 -1.76 16 16 C -0.11 -3.29 9.54 22.31 0.21 -3.08 16 17 C -0.02 -0.52 9.60 22.17 0.21 -0.30 16 18 C -0.20 -5.73 5.89 -19.97 -0.12 -5.85 16 19 C 0.18 5.68 6.66 38.69 0.26 5.94 16 20 C -0.11 -3.72 7.64 22.62 0.17 -3.55 16 21 N -0.63 -18.34 5.35 -317.91 -1.70 -20.04 16 22 H 0.44 11.99 8.79 -92.71 -0.81 11.18 16 23 C 0.71 20.96 8.33 179.35 1.49 22.45 16 24 O -0.57 -18.72 16.49 -3.96 -0.07 -18.79 16 25 N -0.56 -15.02 2.55 -776.71 -1.98 -17.00 16 26 C 0.10 2.11 5.76 86.38 0.50 2.61 16 27 C -0.16 -2.93 10.23 71.98 0.74 -2.20 16 28 C 0.57 16.38 7.65 86.67 0.66 17.04 16 29 O -0.51 -15.41 16.16 -3.97 -0.06 -15.48 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.07 2.68 3.79 -2.39 -0.01 2.67 16 36 H 0.07 2.67 7.52 -2.39 -0.02 2.65 16 37 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 38 H 0.15 4.18 8.01 -2.91 -0.02 4.15 16 39 H 0.17 3.68 7.79 -2.91 -0.02 3.66 16 40 H 0.16 6.03 5.81 -2.91 -0.02 6.02 16 41 H 0.10 2.13 7.30 -2.39 -0.02 2.11 16 42 H 0.11 2.09 7.41 -2.38 -0.02 2.07 16 43 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -57.53 371.56 3.90 -53.64 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.19 Total: 32.42 kcal Atomic # 6 Polarization: 30.91 SS G_CDS: 6.91 Total: 37.82 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -4.73 Total: -101.04 kcal Atomic # 8 Polarization: -61.76 SS G_CDS: -0.19 Total: -61.95 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 1.72 Total: 39.12 kcal Total: -57.53 3.90 -53.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.148 kcal (2) G-P(sol) polarization free energy of solvation -57.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds