Wall clock time and date at job start Wed Apr 1 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 N 1.46495 * 109.47045 * 179.97438 * 3 2 1 5 5 C 1.36941 * 120.00312 * 273.75067 * 4 3 2 6 6 H 1.08001 * 119.99790 * 8.92948 * 5 4 3 7 7 C 1.38806 * 120.00124 * 188.94120 * 5 4 3 8 8 N 1.31624 * 120.00398 * 24.90793 * 7 5 4 9 9 Si 1.86807 * 119.99858 * 204.90867 * 7 5 4 10 10 H 1.48498 * 109.46924 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47099 * 119.99725 * 9 7 5 12 12 H 1.48497 * 109.47276 * 239.99698 * 9 7 5 13 13 C 1.46498 * 120.00038 * 93.74738 * 4 3 2 14 14 C 1.50707 * 109.47295 * 89.99872 * 13 4 3 15 15 O 1.21274 * 119.99722 * 0.02562 * 14 13 4 16 16 N 1.34771 * 119.99990 * 180.02562 * 14 13 4 17 17 C 1.39455 * 119.99950 * 185.16975 * 16 14 13 18 18 C 1.38969 * 119.85033 * 33.08692 * 17 16 14 19 19 C 1.38271 * 120.40051 * 180.02562 * 18 17 16 20 20 C 1.38791 * 119.82925 * 0.25222 * 19 18 17 21 21 C 1.41097 * 119.92432 * 359.47815 * 20 19 18 22 22 C 1.38317 * 119.89898 * 0.52030 * 21 20 19 23 23 C 1.47866 * 105.85189 * 180.33715 * 21 20 19 24 24 O 1.21443 * 125.74079 * 180.22421 * 23 21 20 25 25 N 1.34540 * 108.51221 * 359.48682 * 23 21 20 26 26 C 1.46491 * 124.44638 * 180.02562 * 25 23 21 27 27 C 1.34504 * 111.09949 * 0.69284 * 25 23 21 28 28 O 1.21476 * 125.67438 * 179.42798 * 27 25 23 29 29 H 1.09004 * 109.46875 * 60.00539 * 1 2 3 30 30 H 1.09003 * 109.47330 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47475 * 300.00063 * 1 2 3 32 32 H 1.08993 * 109.47604 * 240.00020 * 2 1 3 33 33 H 1.09004 * 109.46875 * 119.99461 * 2 1 3 34 34 H 1.09003 * 109.47061 * 59.99683 * 3 2 1 35 35 H 1.09004 * 109.46869 * 299.99464 * 3 2 1 36 36 H 0.96996 * 119.99696 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47500 * 329.99799 * 13 4 3 38 38 H 1.09008 * 109.47462 * 209.99964 * 13 4 3 39 39 H 0.97004 * 120.00642 * 5.16404 * 16 14 13 40 40 H 1.08000 * 119.80014 * 359.97438 * 18 17 16 41 41 H 1.07997 * 120.09007 * 179.97438 * 19 18 17 42 42 H 1.08001 * 120.17642 * 179.77267 * 22 21 20 43 43 H 1.08997 * 109.47008 * 180.66986 * 26 25 23 44 44 H 1.08997 * 109.47420 * 300.66836 * 26 25 23 45 45 H 1.09002 * 109.47499 * 60.66969 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3652 1.1843 6 1 3.6586 1.1596 2.1023 7 6 5.5646 1.5512 1.2043 8 7 6.1471 2.2576 0.2587 9 14 6.5890 0.7988 2.5733 10 1 5.7018 0.0568 3.5048 11 1 7.5853 -0.1352 1.9900 12 1 7.2942 1.8761 3.3131 13 6 4.2379 1.5253 -1.2651 14 6 4.4892 2.9715 -1.6065 15 8 4.0953 3.8468 -0.8653 16 7 5.1518 3.2921 -2.7355 17 6 5.4790 4.6220 -2.9982 18 6 5.7778 5.4813 -1.9477 19 6 6.1032 6.8022 -2.1951 20 6 6.1267 7.2747 -3.4999 21 6 5.8295 6.4036 -4.5694 22 6 5.5049 5.0836 -4.3137 23 6 5.9527 7.2164 -5.7985 24 8 5.7689 6.8208 -6.9319 25 7 6.2868 8.4718 -5.4487 26 6 6.4978 9.5680 -6.3974 27 6 6.4158 8.5847 -4.1147 28 8 6.7195 9.5968 -3.5154 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 7.1082 2.3871 0.2726 37 1 3.6493 1.0621 -2.0569 38 1 5.1904 1.0041 -1.1682 39 1 5.4012 2.5978 -3.3654 40 1 5.7549 5.1154 -0.9318 41 1 6.3342 7.4657 -1.3749 42 1 5.2730 4.4139 -5.1287 43 1 6.7697 10.4723 -5.8530 44 1 7.3003 9.3033 -7.0859 45 1 5.5805 9.7440 -6.9591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058910147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:15 Heat of formation + Delta-G solvation = -19.815504 kcal Electronic energy + Delta-G solvation = -29923.365184 eV Core-core repulsion = 25715.137523 eV Total energy + Delta-G solvation = -4208.227661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.24600 -39.68280 -38.64210 -37.73900 -36.08027 -35.73572 -34.06460 -33.07025 -31.61559 -30.76169 -30.39832 -27.89115 -26.71600 -25.67237 -25.00031 -22.99945 -22.72206 -21.85019 -20.55625 -20.04414 -19.44455 -17.92986 -17.28021 -17.21305 -16.83298 -16.58086 -15.85136 -15.45623 -15.28030 -14.71586 -14.56529 -14.41427 -14.01566 -13.94116 -13.89379 -13.65944 -13.53536 -13.21892 -12.98454 -12.91773 -12.77854 -12.57102 -12.38879 -11.73554 -11.63895 -11.50216 -11.13832 -10.82928 -10.77343 -10.61947 -10.49932 -10.42282 -10.29221 -10.03974 -9.95155 -9.93371 -9.84407 -9.17650 -8.94995 -8.49014 -7.84684 -7.10329 -6.00386 -3.23748 0.14556 1.11463 2.12297 2.26206 2.89627 3.30066 3.40476 3.40719 3.44166 3.63569 3.90511 4.08745 4.34777 4.41749 4.69812 4.89378 5.03692 5.13941 5.18360 5.24368 5.26941 5.34684 5.38635 5.53344 5.55196 5.64436 5.79976 5.90746 5.91588 6.00509 6.11499 6.21157 6.24437 6.33658 6.45629 6.47302 6.57081 6.60333 6.70447 6.80512 6.88404 7.04458 7.15028 7.24977 7.60724 7.65270 8.00525 8.16821 8.98897 9.26039 9.66812 10.09036 11.11378 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.002765 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.793991 B =10123.627922 C =11272.491079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.150 3.850 4 N -0.573 5.573 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.002 4.002 8 N -0.906 5.906 9 Si 0.903 3.097 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.293 1.293 13 C 0.166 3.834 14 C 0.525 3.475 15 O -0.502 6.502 16 N -0.685 5.685 17 C 0.208 3.792 18 C -0.102 4.102 19 C -0.017 4.017 20 C -0.188 4.188 21 C -0.126 4.126 22 C -0.089 4.089 23 C 0.581 3.419 24 O -0.472 6.472 25 N -0.584 5.584 26 C 0.081 3.919 27 C 0.581 3.419 28 O -0.476 6.476 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.254 0.746 37 H 0.042 0.958 38 H 0.109 0.891 39 H 0.404 0.596 40 H 0.167 0.833 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.295 4.308 -11.305 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.291 5.291 5 C -0.368 4.368 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.553 5.553 9 Si 0.734 3.266 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.220 1.220 13 C 0.035 3.965 14 C 0.313 3.687 15 O -0.373 6.373 16 N -0.330 5.330 17 C 0.108 3.892 18 C -0.123 4.123 19 C -0.037 4.037 20 C -0.193 4.193 21 C -0.130 4.130 22 C -0.111 4.111 23 C 0.371 3.629 24 O -0.344 6.344 25 N -0.327 5.327 26 C -0.059 4.059 27 C 0.372 3.628 28 O -0.348 6.348 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.127 0.873 39 H 0.239 0.761 40 H 0.184 0.816 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.112 0.888 44 H 0.095 0.905 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.425 5.252 -10.973 12.248 hybrid contribution 0.966 -0.416 0.303 1.094 sum -0.459 4.836 -10.670 11.724 Atomic orbital electron populations 1.21728 0.97156 1.00550 1.01151 1.22089 0.93840 1.00402 1.01788 1.20828 0.84022 0.93346 0.99426 1.43982 0.99914 1.82950 1.02251 1.19321 0.89759 1.40798 0.86955 0.90274 1.24637 0.97246 0.99452 0.98478 1.69792 1.09797 1.39308 1.36388 0.86191 0.80172 0.78960 0.81315 1.20467 1.21633 1.22011 1.20754 0.98696 0.89854 0.87234 1.22857 0.74070 0.94626 0.77134 1.90534 1.49749 1.50390 1.46614 1.44337 1.58210 1.04877 1.25565 1.18034 0.92202 0.86948 0.92008 1.21750 0.96507 0.92244 1.01790 1.20649 0.93791 0.95146 0.94128 1.20229 1.10446 0.93550 0.95098 1.20035 1.05088 0.94867 0.93035 1.20414 1.01169 0.93534 0.95975 1.18410 0.74543 0.81429 0.88536 1.90776 1.45410 1.75351 1.22858 1.46399 1.64814 1.12244 1.09245 1.21848 1.03026 0.88760 0.92297 1.18394 0.74772 0.88398 0.81189 1.90779 1.43208 1.34176 1.66674 0.93394 0.93619 0.93161 0.92926 0.91995 0.93542 0.94468 0.93511 0.93955 0.87306 0.76076 0.81607 0.84368 0.84304 0.88751 0.90495 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.14 -2.27 6.24 -26.73 -0.17 -2.43 16 3 C 0.15 2.87 5.67 -4.04 -0.02 2.85 16 4 N -0.57 -12.73 2.02 -174.60 -0.35 -13.09 16 5 C -0.24 -5.97 9.70 -15.06 -0.15 -6.12 16 6 H 0.08 1.99 7.94 -52.49 -0.42 1.57 16 7 C 0.00 -0.04 4.89 -17.43 -0.09 -0.12 16 8 N -0.91 -22.68 8.95 55.49 0.50 -22.18 16 9 Si 0.90 20.36 29.62 -169.99 -5.04 15.32 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 C 0.17 3.31 5.41 -5.19 -0.03 3.28 16 14 C 0.53 10.57 5.61 -10.98 -0.06 10.50 16 15 O -0.50 -12.06 13.76 5.56 0.08 -11.98 16 16 N -0.68 -10.88 5.32 -9.82 -0.05 -10.93 16 17 C 0.21 3.27 6.29 -83.67 -0.53 2.74 16 18 C -0.10 -1.74 8.63 -39.30 -0.34 -2.08 16 19 C -0.02 -0.26 10.08 -39.36 -0.40 -0.66 16 20 C -0.19 -2.74 6.40 -104.80 -0.67 -3.41 16 21 C -0.13 -1.77 6.40 -104.84 -0.67 -2.44 16 22 C -0.09 -1.21 10.00 -39.11 -0.39 -1.60 16 23 C 0.58 7.99 8.03 -12.43 -0.10 7.89 16 24 O -0.47 -7.19 17.80 5.42 0.10 -7.09 16 25 N -0.58 -7.31 3.02 -125.11 -0.38 -7.69 16 26 C 0.08 0.72 10.87 59.84 0.65 1.37 16 27 C 0.58 8.27 8.01 -12.58 -0.10 8.17 16 28 O -0.48 -7.60 17.43 5.39 0.09 -7.51 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 37 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.11 2.33 6.33 -51.92 -0.33 2.01 16 39 H 0.40 4.99 8.81 -40.82 -0.36 4.63 16 40 H 0.17 3.42 6.35 -52.49 -0.33 3.09 16 41 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.09 0.76 7.58 -51.93 -0.39 0.37 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -30.31 384.03 -7.98 -38.29 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.03 Total: 4.70 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: -2.69 Total: 16.37 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.29 Total: -53.89 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: 0.27 Total: -26.58 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.04 Total: 15.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.31 -7.98 -38.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058910147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.479 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds