Wall clock time and date at job start Wed Apr 1 2020 04:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46994 * 2 1 4 4 N 1.46495 * 109.47045 * 179.97438 * 3 2 1 5 5 C 1.36941 * 120.00312 * 273.75067 * 4 3 2 6 6 H 1.08001 * 119.99790 * 8.92948 * 5 4 3 7 7 C 1.38806 * 120.00124 * 188.94120 * 5 4 3 8 8 N 1.31624 * 120.00398 * 24.90793 * 7 5 4 9 9 Si 1.86807 * 119.99858 * 204.90867 * 7 5 4 10 10 H 1.48498 * 109.46924 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47099 * 119.99725 * 9 7 5 12 12 H 1.48497 * 109.47276 * 239.99698 * 9 7 5 13 13 C 1.46498 * 120.00038 * 93.74738 * 4 3 2 14 14 C 1.50707 * 109.47295 * 89.99872 * 13 4 3 15 15 O 1.21274 * 119.99722 * 0.02562 * 14 13 4 16 16 N 1.34771 * 119.99990 * 180.02562 * 14 13 4 17 17 C 1.39455 * 119.99950 * 185.16975 * 16 14 13 18 18 C 1.38969 * 119.85033 * 33.08692 * 17 16 14 19 19 C 1.38271 * 120.40051 * 180.02562 * 18 17 16 20 20 C 1.38791 * 119.82925 * 0.25222 * 19 18 17 21 21 C 1.41097 * 119.92432 * 359.47815 * 20 19 18 22 22 C 1.38317 * 119.89898 * 0.52030 * 21 20 19 23 23 C 1.47866 * 105.85189 * 180.33715 * 21 20 19 24 24 O 1.21443 * 125.74079 * 180.22421 * 23 21 20 25 25 N 1.34540 * 108.51221 * 359.48682 * 23 21 20 26 26 C 1.46491 * 124.44638 * 180.02562 * 25 23 21 27 27 C 1.34504 * 111.09949 * 0.69284 * 25 23 21 28 28 O 1.21476 * 125.67438 * 179.42798 * 27 25 23 29 29 H 1.09004 * 109.46875 * 60.00539 * 1 2 3 30 30 H 1.09003 * 109.47330 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47475 * 300.00063 * 1 2 3 32 32 H 1.08993 * 109.47604 * 240.00020 * 2 1 3 33 33 H 1.09004 * 109.46875 * 119.99461 * 2 1 3 34 34 H 1.09003 * 109.47061 * 59.99683 * 3 2 1 35 35 H 1.09004 * 109.46869 * 299.99464 * 3 2 1 36 36 H 0.96996 * 119.99696 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47500 * 329.99799 * 13 4 3 38 38 H 1.09008 * 109.47462 * 209.99964 * 13 4 3 39 39 H 0.97004 * 120.00642 * 5.16404 * 16 14 13 40 40 H 1.08000 * 119.80014 * 359.97438 * 18 17 16 41 41 H 1.07997 * 120.09007 * 179.97438 * 19 18 17 42 42 H 1.08001 * 120.17642 * 179.77267 * 22 21 20 43 43 H 1.08997 * 109.47008 * 180.66986 * 26 25 23 44 44 H 1.08997 * 109.47420 * 300.66836 * 26 25 23 45 45 H 1.09002 * 109.47499 * 60.66969 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3652 1.1843 6 1 3.6586 1.1596 2.1023 7 6 5.5646 1.5512 1.2043 8 7 6.1471 2.2576 0.2587 9 14 6.5890 0.7988 2.5733 10 1 5.7018 0.0568 3.5048 11 1 7.5853 -0.1352 1.9900 12 1 7.2942 1.8761 3.3131 13 6 4.2379 1.5253 -1.2651 14 6 4.4892 2.9715 -1.6065 15 8 4.0953 3.8468 -0.8653 16 7 5.1518 3.2921 -2.7355 17 6 5.4790 4.6220 -2.9982 18 6 5.7778 5.4813 -1.9477 19 6 6.1032 6.8022 -2.1951 20 6 6.1267 7.2747 -3.4999 21 6 5.8295 6.4036 -4.5694 22 6 5.5049 5.0836 -4.3137 23 6 5.9527 7.2164 -5.7985 24 8 5.7689 6.8208 -6.9319 25 7 6.2868 8.4718 -5.4487 26 6 6.4978 9.5680 -6.3974 27 6 6.4158 8.5847 -4.1147 28 8 6.7195 9.5968 -3.5154 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 7.1082 2.3871 0.2726 37 1 3.6493 1.0621 -2.0569 38 1 5.1904 1.0041 -1.1682 39 1 5.4012 2.5978 -3.3654 40 1 5.7549 5.1154 -0.9318 41 1 6.3342 7.4657 -1.3749 42 1 5.2730 4.4139 -5.1287 43 1 6.7697 10.4723 -5.8530 44 1 7.3003 9.3033 -7.0859 45 1 5.5805 9.7440 -6.9591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058910147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:14 Heat of formation + Delta-G solvation = -37.617931 kcal Electronic energy + Delta-G solvation = -29924.137155 eV Core-core repulsion = 25715.137523 eV Total energy + Delta-G solvation = -4208.999632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.36340 -41.07911 -39.80283 -39.12109 -37.55593 -36.94672 -35.45393 -34.61056 -32.78796 -32.37633 -31.63809 -29.19293 -27.92597 -27.27422 -26.18123 -24.25913 -24.04080 -23.16440 -21.92646 -21.41387 -20.71558 -19.26957 -18.74152 -18.36775 -18.05447 -17.89031 -17.29846 -16.90351 -16.61686 -16.02484 -15.95022 -15.78153 -15.50954 -15.18852 -15.08395 -14.99570 -14.79547 -14.51541 -14.38661 -14.12356 -13.91707 -13.65773 -13.53893 -13.28243 -13.11370 -12.88198 -12.62473 -12.53104 -12.17389 -12.02238 -12.01630 -11.76869 -11.69947 -11.59496 -11.37104 -11.30407 -10.94167 -10.72989 -10.35850 -10.18135 -9.15557 -8.85039 -7.88483 -5.11907 -1.03687 -0.06377 0.90936 1.25497 1.47837 1.53931 1.60768 1.79722 2.11912 2.29357 2.56210 2.67368 2.78664 3.20742 3.29492 3.56730 3.63722 3.97479 4.10308 4.15978 4.23014 4.28235 4.40480 4.40999 4.43687 4.58255 4.66556 4.68022 4.71359 4.75974 4.80371 4.87992 4.98201 5.00430 5.19601 5.25187 5.28695 5.30978 5.41008 5.47158 5.49738 5.66136 5.71546 5.92014 6.02843 6.28173 6.52542 6.75056 7.16410 7.71553 7.91853 8.26934 9.19575 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.002765 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.793991 B =10123.627922 C =11272.491079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.150 3.850 4 N -0.589 5.589 5 C -0.249 4.249 6 H 0.067 0.933 7 C -0.041 4.041 8 N -0.913 5.913 9 Si 0.954 3.046 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.306 1.306 13 C 0.165 3.835 14 C 0.529 3.471 15 O -0.548 6.548 16 N -0.672 5.672 17 C 0.197 3.803 18 C -0.118 4.118 19 C -0.016 4.016 20 C -0.190 4.190 21 C -0.126 4.126 22 C -0.069 4.069 23 C 0.589 3.411 24 O -0.482 6.482 25 N -0.579 5.579 26 C 0.073 3.927 27 C 0.586 3.414 28 O -0.494 6.494 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.026 0.974 35 H 0.044 0.956 36 H 0.247 0.753 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.423 0.577 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.170 0.830 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 4.095 -13.714 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.024 3.976 4 N -0.308 5.308 5 C -0.379 4.379 6 H 0.085 0.915 7 C -0.236 4.236 8 N -0.560 5.560 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.235 1.235 13 C 0.034 3.966 14 C 0.317 3.683 15 O -0.422 6.422 16 N -0.318 5.318 17 C 0.098 3.902 18 C -0.139 4.139 19 C -0.035 4.035 20 C -0.195 4.195 21 C -0.131 4.131 22 C -0.091 4.091 23 C 0.379 3.621 24 O -0.355 6.355 25 N -0.320 5.320 26 C -0.066 4.066 27 C 0.378 3.622 28 O -0.368 6.368 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.261 0.739 40 H 0.145 0.855 41 H 0.164 0.836 42 H 0.188 0.812 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.835 5.028 -13.447 14.473 hybrid contribution 1.086 -0.262 0.986 1.490 sum -0.750 4.766 -12.461 13.362 Atomic orbital electron populations 1.21675 0.94618 1.01972 1.01684 1.21923 0.95946 0.97760 1.01309 1.20936 0.82594 0.95273 0.98793 1.44158 1.01130 1.83297 1.02188 1.19400 0.90179 1.40532 0.87780 0.91485 1.25141 0.97960 1.00155 1.00344 1.69930 1.09197 1.39739 1.37176 0.85407 0.78841 0.77764 0.79488 1.20257 1.21387 1.23457 1.20785 0.98474 0.89888 0.87468 1.22719 0.73852 0.94250 0.77455 1.90521 1.51794 1.51448 1.48439 1.43912 1.57359 1.05719 1.24830 1.18068 0.92928 0.86496 0.92688 1.21448 0.98485 0.93516 1.00487 1.20626 0.93488 0.94472 0.94945 1.20311 1.10018 0.94201 0.94952 1.20196 1.04632 0.95041 0.93207 1.20555 0.99260 0.93753 0.95489 1.18233 0.74282 0.81623 0.88002 1.90782 1.46011 1.75572 1.23111 1.46437 1.63908 1.12687 1.09008 1.22182 1.04544 0.87844 0.92033 1.18290 0.74386 0.87805 0.81763 1.90776 1.44156 1.34686 1.67179 0.92260 0.91731 0.93283 0.92149 0.93675 0.95516 0.93728 0.94268 0.90234 0.88899 0.73912 0.85471 0.83557 0.81217 0.87988 0.88843 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.91 71.98 0.71 -2.70 16 2 C -0.13 -4.02 6.24 30.60 0.19 -3.83 16 3 C 0.15 5.71 5.67 86.38 0.49 6.20 16 4 N -0.59 -26.45 2.02 -706.31 -1.43 -27.88 16 5 C -0.25 -12.71 9.70 84.03 0.81 -11.90 16 6 H 0.07 3.49 7.94 -2.91 -0.02 3.46 16 7 C -0.04 -2.08 4.89 84.86 0.42 -1.67 16 8 N -0.91 -46.84 8.95 21.65 0.19 -46.65 16 9 Si 0.95 42.79 29.62 68.60 2.03 44.82 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.31 -14.32 7.11 99.48 0.71 -13.62 16 13 C 0.16 6.52 5.41 85.64 0.46 6.98 16 14 C 0.53 21.38 5.61 87.66 0.49 21.88 16 15 O -0.55 -27.09 13.76 -3.01 -0.04 -27.13 16 16 N -0.67 -20.85 5.32 -303.37 -1.61 -22.47 16 17 C 0.20 6.07 6.29 38.39 0.24 6.31 16 18 C -0.12 -4.14 8.63 22.45 0.19 -3.95 16 19 C -0.02 -0.48 10.08 22.41 0.23 -0.25 16 20 C -0.19 -5.32 6.40 -19.98 -0.13 -5.45 16 21 C -0.13 -3.29 6.40 -20.01 -0.13 -3.42 16 22 C -0.07 -1.72 10.00 22.58 0.23 -1.49 16 23 C 0.59 14.67 8.03 86.83 0.70 15.37 16 24 O -0.48 -13.26 17.80 -3.54 -0.06 -13.32 16 25 N -0.58 -13.13 3.02 -786.64 -2.38 -15.51 16 26 C 0.07 1.08 10.87 127.77 1.39 2.47 16 27 C 0.59 15.78 8.01 86.75 0.69 16.48 16 28 O -0.49 -15.21 17.43 -3.64 -0.06 -15.27 16 29 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.03 1.10 8.07 -2.39 -0.02 1.08 16 35 H 0.04 1.61 8.04 -2.38 -0.02 1.59 16 36 H 0.25 12.67 8.31 -92.71 -0.77 11.90 16 37 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 38 H 0.09 3.99 6.33 -2.38 -0.02 3.98 16 39 H 0.42 9.70 8.81 -92.71 -0.82 8.88 16 40 H 0.13 5.59 6.35 -2.91 -0.02 5.57 16 41 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 43 H 0.10 1.39 7.58 -2.39 -0.02 1.38 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.57 384.03 3.85 -62.73 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.22 Total: 19.64 kcal Atomic # 6 Polarization: 34.04 SS G_CDS: 6.99 Total: 41.04 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -5.23 Total: -112.50 kcal Atomic # 8 Polarization: -55.56 SS G_CDS: -0.17 Total: -55.73 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -66.57 3.85 -62.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058910147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.108 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds