Wall clock time and date at job start Wed Apr 1 2020 03:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47189 * 2 1 4 4 H 1.09004 * 109.46986 * 54.99632 * 3 2 1 5 5 N 1.46502 * 109.47054 * 295.00324 * 3 2 1 6 6 C 1.34768 * 120.00082 * 84.99267 * 5 3 2 7 7 O 1.21279 * 120.00229 * 0.02562 * 6 5 3 8 8 C 1.50700 * 119.99844 * 179.97438 * 6 5 3 9 9 C 1.50707 * 109.47089 * 180.02562 * 8 6 5 10 10 C 1.38321 * 119.96235 * 269.72646 * 9 8 6 11 11 C 1.38280 * 120.13700 * 179.76757 * 10 9 8 12 12 C 1.38127 * 120.06774 * 0.50859 * 11 10 9 13 13 C 1.38853 * 119.92806 * 359.74640 * 12 11 10 14 14 O 1.35757 * 120.06919 * 179.97438 * 13 12 11 15 15 C 1.34827 * 116.99849 * 354.48487 * 14 13 12 16 16 H 1.08006 * 120.00052 * 5.06617 * 15 14 13 17 17 C 1.38652 * 120.00267 * 185.05922 * 15 14 13 18 18 N 1.31556 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00268 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46905 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47463 * 120.00067 * 19 17 15 22 22 H 1.48498 * 109.46617 * 239.99942 * 19 17 15 23 23 C 1.38079 * 119.96612 * 90.00423 * 9 8 6 24 24 C 1.50701 * 109.47217 * 174.99907 * 3 2 1 25 25 N 1.29943 * 126.28333 * 74.68855 * 24 3 2 26 26 O 1.21304 * 110.24805 * 179.83946 * 25 24 3 27 27 C 1.33645 * 109.81025 * 0.42786 * 26 25 24 28 28 C 1.50700 * 126.55301 * 179.71622 * 27 26 25 29 29 N 1.31130 * 106.89813 * 359.73808 * 27 26 25 30 30 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47289 * 299.99437 * 1 2 3 32 32 H 1.08998 * 109.47208 * 60.00195 * 1 2 3 33 33 H 1.08996 * 109.47212 * 240.00031 * 2 1 3 34 34 H 1.08998 * 109.47208 * 119.99805 * 2 1 3 35 35 H 0.97000 * 119.99756 * 265.00290 * 5 3 2 36 36 H 1.09000 * 109.47111 * 60.00496 * 8 6 5 37 37 H 1.09001 * 109.47712 * 300.00764 * 8 6 5 38 38 H 1.08002 * 119.93628 * 359.97438 * 10 9 8 39 39 H 1.07998 * 119.96810 * 180.25311 * 11 10 9 40 40 H 1.08000 * 120.03454 * 179.72133 * 12 11 10 41 41 H 0.97001 * 120.00363 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.03338 * 359.95102 * 23 9 8 43 43 H 1.09001 * 109.46863 * 270.03009 * 28 27 26 44 44 H 1.09000 * 109.47046 * 30.01912 * 28 27 26 45 45 H 1.08996 * 109.47494 * 150.02221 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6643 -1.3669 7 8 -0.3393 2.6325 -0.4341 8 6 0.0366 3.3385 -2.6544 9 6 -1.3610 3.8868 -2.5227 10 6 -2.4461 3.1037 -2.8728 11 6 -3.7303 3.6014 -2.7489 12 6 -3.9326 4.8865 -2.2848 13 6 -2.8451 5.6769 -1.9375 14 8 -3.0406 6.9406 -1.4815 15 6 -4.3051 7.4081 -1.4971 16 1 -5.1180 6.7573 -1.7838 17 6 -4.5621 8.7243 -1.1450 18 7 -3.5719 9.5172 -0.7962 19 14 -6.3141 9.3719 -1.1660 20 1 -7.2369 8.2891 -1.5918 21 1 -6.6873 9.8344 0.1949 22 1 -6.4108 10.5071 -2.1184 23 6 -1.5566 5.1723 -2.0581 24 6 3.5419 1.4443 0.1239 25 7 4.3910 1.1394 -0.8114 26 8 5.5265 1.2417 -0.3971 27 6 5.5088 1.6245 0.8833 28 6 6.7070 1.8594 1.7665 29 7 4.2495 1.7562 1.2243 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2718 2.1231 -1.9978 36 1 0.0680 2.6145 -3.4686 37 1 0.7280 4.1541 -2.8667 38 1 -2.2903 2.1003 -3.2406 39 1 -4.5757 2.9862 -3.0192 40 1 -4.9356 5.2763 -2.1925 41 1 -3.7516 10.4381 -0.5502 42 1 -0.7088 5.7845 -1.7885 43 1 6.9725 0.9315 2.2730 44 1 7.5470 2.1941 1.1578 45 1 6.4684 2.6224 2.5073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089773641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:41 Heat of formation + Delta-G solvation = 27.827977 kcal Electronic energy + Delta-G solvation = -29110.839252 eV Core-core repulsion = 24904.677568 eV Total energy + Delta-G solvation = -4206.161684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.01011 -40.16267 -38.85771 -37.12055 -36.34787 -35.47868 -33.51544 -32.82652 -32.25460 -31.66740 -29.38639 -29.16260 -28.03878 -26.58719 -25.17152 -24.07487 -22.72168 -21.92937 -21.47854 -20.61826 -20.24046 -18.54032 -18.13003 -17.58661 -16.99390 -16.83292 -16.49507 -15.69237 -15.10972 -14.97997 -14.71048 -14.52829 -14.35423 -14.02497 -13.95863 -13.67294 -13.60440 -13.40941 -13.20999 -13.04124 -12.59988 -12.50585 -12.37018 -12.19212 -11.85228 -11.69558 -11.61002 -11.48225 -11.44011 -11.23165 -11.01428 -10.79853 -10.72627 -10.56795 -10.39130 -10.32888 -9.74031 -9.27945 -9.23875 -8.78961 -8.01381 -7.16091 -6.39065 -3.97920 0.72535 1.74344 2.14104 2.39978 2.44718 2.71117 2.88637 3.16140 3.17257 3.22991 3.31095 3.67550 4.01313 4.44079 4.56721 4.67247 4.71977 4.75380 4.89211 4.92480 5.00083 5.12368 5.15890 5.23549 5.26764 5.34781 5.47065 5.53822 5.54616 5.66296 5.70518 5.80262 5.82706 5.97760 5.98559 6.22137 6.23359 6.36654 6.39579 6.71181 6.97302 7.13112 7.32027 7.35832 7.42811 7.49938 7.74858 7.88453 8.06270 8.25144 9.06876 9.78304 10.79392 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.002133 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.439579 B =13125.665070 C =14168.012815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.239 3.761 4 H 0.120 0.880 5 N -0.733 5.733 6 C 0.518 3.482 7 O -0.506 6.506 8 C -0.093 4.093 9 C -0.032 4.032 10 C -0.195 4.195 11 C -0.075 4.075 12 C -0.230 4.230 13 C 0.155 3.845 14 O -0.180 6.180 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.174 4.174 24 C 0.168 3.832 25 N -0.376 5.376 26 O 0.079 5.921 27 C 0.180 3.820 28 C -0.063 4.063 29 N -0.474 5.474 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.268 0.732 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.167 -18.448 0.536 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.133 3.867 4 H 0.138 0.862 5 N -0.388 5.388 6 C 0.305 3.695 7 O -0.379 6.379 8 C -0.132 4.132 9 C -0.033 4.033 10 C -0.214 4.214 11 C -0.093 4.093 12 C -0.249 4.249 13 C 0.101 3.899 14 O -0.084 6.084 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.193 4.193 24 C -0.105 4.105 25 N -0.083 5.083 26 O 0.019 5.981 27 C -0.040 4.040 28 C -0.121 4.121 29 N -0.208 5.208 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.237 0.763 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.165 -18.183 0.870 25.716 hybrid contribution -0.340 0.316 -0.278 0.541 sum 17.825 -17.867 0.592 25.245 Atomic orbital electron populations 1.21802 0.93219 1.01169 1.03983 1.21934 0.98151 0.93819 1.02573 1.19114 0.81625 0.95738 0.90257 0.86243 1.46049 1.17840 1.59487 1.15468 1.20748 0.80570 0.77669 0.90482 1.90782 1.50371 1.56661 1.40059 1.20585 0.96573 1.00957 0.95122 1.18620 0.92277 0.93298 0.99121 1.20337 0.92369 0.99188 1.09552 1.20675 0.96087 0.94823 0.97709 1.21175 0.99358 0.95487 1.08910 1.19273 0.93019 0.86258 0.91314 1.83979 1.30797 1.22971 1.70644 1.21365 0.81857 0.95791 1.47577 0.89073 1.25278 0.99810 0.94929 0.96597 1.70052 1.31223 1.06578 1.42154 0.85653 0.80465 0.79084 0.78251 1.19121 1.20190 1.20206 1.19943 0.94946 0.95989 1.08433 1.25885 0.99775 0.99302 0.85553 1.74577 0.89870 1.20814 1.23064 1.85296 1.24316 1.62275 1.26199 1.28913 0.96106 0.94525 0.84458 1.20434 0.89774 1.05125 0.96756 1.71918 1.01325 1.20656 1.26887 0.93025 0.91555 0.91775 0.91387 0.90999 0.76330 0.88258 0.88222 0.87948 0.87500 0.85633 0.92173 0.86890 0.87899 0.88255 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.51 37.16 0.32 -1.40 16 2 C -0.13 -1.31 5.59 -26.73 -0.15 -1.46 16 3 C 0.24 2.81 2.80 -69.08 -0.19 2.62 16 4 H 0.12 1.63 7.58 -51.93 -0.39 1.24 16 5 N -0.73 -8.46 5.02 -54.93 -0.28 -8.74 16 6 C 0.52 7.48 6.39 -10.99 -0.07 7.41 16 7 O -0.51 -9.30 13.17 5.56 0.07 -9.23 16 8 C -0.09 -1.25 5.83 -29.03 -0.17 -1.42 16 9 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 10 C -0.20 -3.54 9.70 -39.54 -0.38 -3.92 16 11 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 12 C -0.23 -5.25 9.17 -39.39 -0.36 -5.61 16 13 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 14 O -0.18 -5.33 9.76 0.04 0.00 -5.33 16 15 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 16 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.99 13.67 55.48 0.76 -25.23 16 19 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.17 -3.86 9.65 -39.40 -0.38 -4.24 16 24 C 0.17 1.91 7.01 -156.37 -1.10 0.81 16 25 N -0.38 -4.03 11.87 30.90 0.37 -3.67 16 26 O 0.08 0.71 11.31 18.09 0.20 0.91 16 27 C 0.18 1.39 8.51 -13.05 -0.11 1.28 16 28 C -0.06 -0.15 10.51 36.01 0.38 0.22 16 29 N -0.47 -5.18 11.55 -9.87 -0.11 -5.30 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 32 H 0.06 0.87 5.65 -51.93 -0.29 0.57 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 3.87 8.36 -40.82 -0.34 3.53 16 36 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 40 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 43 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 45 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -35.98 384.71 -7.13 -43.11 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.78 Total: 6.55 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -3.14 Total: -14.93 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.74 Total: -42.93 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.28 Total: -13.65 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.98 -7.13 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089773641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.936 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds