Wall clock time and date at job start Wed Apr 1 2020 03:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47189 * 2 1 4 4 H 1.09004 * 109.46986 * 54.99632 * 3 2 1 5 5 N 1.46502 * 109.47054 * 295.00324 * 3 2 1 6 6 C 1.34768 * 120.00082 * 84.99267 * 5 3 2 7 7 O 1.21279 * 120.00229 * 0.02562 * 6 5 3 8 8 C 1.50700 * 119.99844 * 179.97438 * 6 5 3 9 9 C 1.50707 * 109.47089 * 180.02562 * 8 6 5 10 10 C 1.38321 * 119.96235 * 269.72646 * 9 8 6 11 11 C 1.38280 * 120.13700 * 179.76757 * 10 9 8 12 12 C 1.38127 * 120.06774 * 0.50859 * 11 10 9 13 13 C 1.38853 * 119.92806 * 359.74640 * 12 11 10 14 14 O 1.35757 * 120.06919 * 179.97438 * 13 12 11 15 15 C 1.34827 * 116.99849 * 354.48487 * 14 13 12 16 16 H 1.08006 * 120.00052 * 5.06617 * 15 14 13 17 17 C 1.38652 * 120.00267 * 185.05922 * 15 14 13 18 18 N 1.31556 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00268 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46905 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47463 * 120.00067 * 19 17 15 22 22 H 1.48498 * 109.46617 * 239.99942 * 19 17 15 23 23 C 1.38079 * 119.96612 * 90.00423 * 9 8 6 24 24 C 1.50701 * 109.47217 * 174.99907 * 3 2 1 25 25 N 1.29943 * 126.28333 * 74.68855 * 24 3 2 26 26 O 1.21304 * 110.24805 * 179.83946 * 25 24 3 27 27 C 1.33645 * 109.81025 * 0.42786 * 26 25 24 28 28 C 1.50700 * 126.55301 * 179.71622 * 27 26 25 29 29 N 1.31130 * 106.89813 * 359.73808 * 27 26 25 30 30 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47289 * 299.99437 * 1 2 3 32 32 H 1.08998 * 109.47208 * 60.00195 * 1 2 3 33 33 H 1.08996 * 109.47212 * 240.00031 * 2 1 3 34 34 H 1.08998 * 109.47208 * 119.99805 * 2 1 3 35 35 H 0.97000 * 119.99756 * 265.00290 * 5 3 2 36 36 H 1.09000 * 109.47111 * 60.00496 * 8 6 5 37 37 H 1.09001 * 109.47712 * 300.00764 * 8 6 5 38 38 H 1.08002 * 119.93628 * 359.97438 * 10 9 8 39 39 H 1.07998 * 119.96810 * 180.25311 * 11 10 9 40 40 H 1.08000 * 120.03454 * 179.72133 * 12 11 10 41 41 H 0.97001 * 120.00363 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.03338 * 359.95102 * 23 9 8 43 43 H 1.09001 * 109.46863 * 270.03009 * 28 27 26 44 44 H 1.09000 * 109.47046 * 30.01912 * 28 27 26 45 45 H 1.08996 * 109.47494 * 150.02221 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6643 -1.3669 7 8 -0.3393 2.6325 -0.4341 8 6 0.0366 3.3385 -2.6544 9 6 -1.3610 3.8868 -2.5227 10 6 -2.4461 3.1037 -2.8728 11 6 -3.7303 3.6014 -2.7489 12 6 -3.9326 4.8865 -2.2848 13 6 -2.8451 5.6769 -1.9375 14 8 -3.0406 6.9406 -1.4815 15 6 -4.3051 7.4081 -1.4971 16 1 -5.1180 6.7573 -1.7838 17 6 -4.5621 8.7243 -1.1450 18 7 -3.5719 9.5172 -0.7962 19 14 -6.3141 9.3719 -1.1660 20 1 -7.2369 8.2891 -1.5918 21 1 -6.6873 9.8344 0.1949 22 1 -6.4108 10.5071 -2.1184 23 6 -1.5566 5.1723 -2.0581 24 6 3.5419 1.4443 0.1239 25 7 4.3910 1.1394 -0.8114 26 8 5.5265 1.2417 -0.3971 27 6 5.5088 1.6245 0.8833 28 6 6.7070 1.8594 1.7665 29 7 4.2495 1.7562 1.2243 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2718 2.1231 -1.9978 36 1 0.0680 2.6145 -3.4686 37 1 0.7280 4.1541 -2.8667 38 1 -2.2903 2.1003 -3.2406 39 1 -4.5757 2.9862 -3.0192 40 1 -4.9356 5.2763 -2.1925 41 1 -3.7516 10.4381 -0.5502 42 1 -0.7088 5.7845 -1.7885 43 1 6.9725 0.9315 2.2730 44 1 7.5470 2.1941 1.1578 45 1 6.4684 2.6224 2.5073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089773641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:40 Heat of formation + Delta-G solvation = 1.140720 kcal Electronic energy + Delta-G solvation = -29111.996498 eV Core-core repulsion = 24904.677568 eV Total energy + Delta-G solvation = -4207.318931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.74522 -41.37456 -40.56844 -38.45920 -37.70188 -36.33418 -34.36645 -34.21828 -33.89338 -32.99239 -30.89940 -29.83762 -29.17110 -27.88757 -27.16807 -24.83601 -23.51619 -23.36899 -23.02747 -21.85341 -21.38299 -19.55385 -19.27381 -18.98578 -18.66722 -17.87299 -17.53495 -16.92129 -16.70586 -16.18483 -16.10788 -15.75574 -15.51671 -15.49103 -15.21767 -14.87713 -14.52556 -14.29841 -14.18738 -14.13204 -13.99105 -13.89183 -13.59381 -13.10177 -13.00999 -12.98222 -12.84572 -12.57891 -12.50709 -12.42419 -12.36545 -12.22684 -12.19866 -12.08712 -11.94655 -11.20796 -11.08789 -10.90685 -10.80422 -10.28170 -9.64584 -8.97950 -8.47644 -6.16123 0.05247 0.50473 0.75758 0.99474 1.33379 1.42312 1.52374 1.58792 1.83814 1.93825 2.17121 2.47066 2.82836 2.98413 3.17611 3.43186 3.67145 3.75082 3.81509 4.03080 4.03553 4.10539 4.30205 4.31532 4.40942 4.45055 4.49314 4.57686 4.60678 4.61861 4.65693 4.73572 4.74386 4.91875 4.94362 5.01700 5.06930 5.12786 5.13058 5.25055 5.30398 5.39365 5.65060 5.72729 5.75277 6.02655 6.22278 6.39366 6.97033 7.03434 7.17480 7.79059 8.76307 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.002133 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.439579 B =13125.665070 C =14168.012815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.241 3.759 4 H 0.093 0.907 5 N -0.716 5.716 6 C 0.521 3.479 7 O -0.553 6.553 8 C -0.090 4.090 9 C -0.024 4.024 10 C -0.177 4.177 11 C -0.073 4.073 12 C -0.245 4.245 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.266 1.266 23 C -0.192 4.192 24 C 0.156 3.844 25 N -0.384 5.384 26 O 0.081 5.919 27 C 0.196 3.804 28 C -0.063 4.063 29 N -0.512 5.512 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.415 0.585 36 H 0.145 0.855 37 H 0.118 0.882 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.272 0.728 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.319 -21.489 -0.868 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C 0.134 3.866 4 H 0.111 0.889 5 N -0.371 5.371 6 C 0.309 3.691 7 O -0.430 6.430 8 C -0.130 4.130 9 C -0.024 4.024 10 C -0.195 4.195 11 C -0.091 4.091 12 C -0.264 4.264 13 C 0.062 3.938 14 O -0.142 6.142 15 C -0.489 4.489 16 H 0.118 0.882 17 C -0.223 4.223 18 N -0.562 5.562 19 Si 0.840 3.160 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.191 1.191 23 C -0.212 4.212 24 C -0.117 4.117 25 N -0.092 5.092 26 O 0.021 5.979 27 C -0.023 4.023 28 C -0.121 4.121 29 N -0.246 5.246 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.251 0.749 36 H 0.163 0.837 37 H 0.136 0.864 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 19.371 -21.289 -0.567 28.788 hybrid contribution -0.433 0.959 0.118 1.059 sum 18.938 -20.330 -0.449 27.788 Atomic orbital electron populations 1.21723 0.94161 1.01618 1.02133 1.21852 0.97068 0.93012 1.03532 1.19000 0.82262 0.96131 0.89216 0.88907 1.45851 1.17072 1.58344 1.15862 1.20835 0.80842 0.77288 0.90107 1.90786 1.51935 1.58656 1.41580 1.20689 0.93722 1.02528 0.96027 1.19106 0.95409 0.91517 0.96393 1.20960 0.91452 1.00635 1.06485 1.21133 0.98310 0.93501 0.96125 1.21292 0.98300 0.97021 1.09827 1.19871 0.95137 0.85721 0.93116 1.83939 1.31326 1.25359 1.73616 1.21869 0.82301 0.96648 1.48054 0.88194 1.26630 1.05061 0.94769 0.95816 1.70199 1.34153 1.07200 1.44615 0.84505 0.74162 0.78677 0.78676 1.17466 1.19379 1.19097 1.20202 0.93664 0.97873 1.09448 1.25742 0.99523 1.00284 0.86163 1.74544 0.90248 1.21161 1.23200 1.85268 1.23515 1.62290 1.26832 1.29869 0.96529 0.91906 0.84038 1.20814 0.88361 1.06450 0.96440 1.71921 1.02818 1.22501 1.27403 0.91313 0.93892 0.93109 0.90121 0.90210 0.74862 0.83725 0.86415 0.83387 0.83661 0.86499 0.91869 0.87847 0.85568 0.85646 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 71.98 0.61 -2.56 16 2 C -0.12 -2.27 5.59 30.60 0.17 -2.09 16 3 C 0.24 5.54 2.80 44.25 0.12 5.66 16 4 H 0.09 2.66 7.58 -2.38 -0.02 2.64 16 5 N -0.72 -15.46 5.02 -446.09 -2.24 -17.70 16 6 C 0.52 14.30 6.39 87.66 0.56 14.86 16 7 O -0.55 -20.37 13.17 -3.03 -0.04 -20.41 16 8 C -0.09 -2.18 5.83 29.10 0.17 -2.01 16 9 C -0.02 -0.83 4.37 -19.88 -0.09 -0.92 16 10 C -0.18 -5.80 9.70 22.30 0.22 -5.58 16 11 C -0.07 -2.66 10.04 22.25 0.22 -2.44 16 12 C -0.25 -11.42 9.17 22.39 0.21 -11.21 16 13 C 0.11 5.95 6.65 22.58 0.15 6.10 16 14 O -0.24 -14.98 9.76 -22.78 -0.22 -15.20 16 15 C -0.41 -25.18 9.49 67.92 0.64 -24.53 16 16 H 0.10 5.63 5.20 -2.91 -0.02 5.61 16 17 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 18 N -0.92 -58.71 13.67 21.61 0.30 -58.42 16 19 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 20 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 C -0.19 -8.83 9.65 22.39 0.22 -8.62 16 24 C 0.16 3.41 7.01 138.46 0.97 4.38 16 25 N -0.38 -7.61 11.87 -60.33 -0.72 -8.32 16 26 O 0.08 1.30 11.31 74.81 0.85 2.15 16 27 C 0.20 2.66 8.51 88.38 0.75 3.42 16 28 C -0.06 -0.13 10.51 71.24 0.75 0.62 16 29 N -0.51 -10.84 11.55 -303.21 -3.50 -14.34 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.17 7.85 -2.39 -0.02 1.15 16 32 H 0.05 1.29 5.65 -2.39 -0.01 1.28 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 6.98 8.36 -92.71 -0.78 6.21 16 36 H 0.14 2.24 8.08 -2.39 -0.02 2.22 16 37 H 0.12 2.49 8.08 -2.39 -0.02 2.47 16 38 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 39 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 40 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 41 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.13 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -86.61 384.71 2.86 -83.75 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.27 Total: 27.94 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 6.14 Total: -25.99 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.16 Total: -98.79 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: 0.58 Total: -33.47 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -86.61 2.86 -83.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089773641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.891 kcal (2) G-P(sol) polarization free energy of solvation -86.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds