Wall clock time and date at job start Wed Apr 1 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47023 * 2 1 4 4 H 1.08995 * 109.47421 * 304.99656 * 3 2 1 5 5 N 1.46497 * 109.46968 * 65.00243 * 3 2 1 6 6 C 1.34781 * 119.99756 * 274.72375 * 5 3 2 7 7 O 1.21272 * 120.00215 * 0.27069 * 6 5 3 8 8 C 1.50703 * 119.99742 * 180.27963 * 6 5 3 9 9 C 1.50705 * 109.46676 * 179.97438 * 8 6 5 10 10 C 1.38327 * 119.96363 * 269.71913 * 9 8 6 11 11 C 1.38279 * 120.13702 * 179.77068 * 10 9 8 12 12 C 1.38118 * 120.06661 * 0.50696 * 11 10 9 13 13 C 1.38855 * 119.93407 * 359.74677 * 12 11 10 14 14 O 1.35749 * 120.07001 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00413 * 354.49741 * 14 13 12 16 16 H 1.08002 * 119.99386 * 5.05210 * 15 14 13 17 17 C 1.38649 * 120.00623 * 185.04993 * 15 14 13 18 18 N 1.31564 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00414 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46790 * 60.00243 * 19 17 15 21 21 H 1.48496 * 109.47242 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47140 * 300.00264 * 19 17 15 23 23 C 1.38077 * 119.96554 * 89.99712 * 9 8 6 24 24 C 1.50697 * 109.47118 * 184.99840 * 3 2 1 25 25 N 1.29952 * 126.29099 * 285.02977 * 24 3 2 26 26 O 1.21292 * 110.25483 * 179.97438 * 25 24 3 27 27 C 1.33645 * 109.81248 * 359.97438 * 26 25 24 28 28 C 1.50697 * 126.55389 * 180.02562 * 27 26 25 29 29 N 1.31132 * 106.89298 * 359.76758 * 27 26 25 30 30 H 1.09003 * 109.47501 * 60.00084 * 1 2 3 31 31 H 1.09006 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47234 * 299.99811 * 1 2 3 33 33 H 1.09001 * 109.47024 * 239.99678 * 2 1 3 34 34 H 1.09000 * 109.46983 * 120.00460 * 2 1 3 35 35 H 0.96996 * 120.00243 * 95.00135 * 5 3 2 36 36 H 1.09000 * 109.47063 * 299.99525 * 8 6 5 37 37 H 1.08998 * 109.47445 * 60.00109 * 8 6 5 38 38 H 1.08000 * 119.92824 * 359.97438 * 10 9 8 39 39 H 1.07996 * 119.96162 * 180.25565 * 11 10 9 40 40 H 1.08004 * 120.03339 * 179.72618 * 12 11 10 41 41 H 0.97003 * 119.99793 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.03635 * 359.95965 * 23 9 8 43 43 H 1.08998 * 109.47474 * 359.97144 * 28 27 26 44 44 H 1.09001 * 109.47403 * 119.97130 * 28 27 26 45 45 H 1.09007 * 109.47061 * 239.97432 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4371 2.6691 1.3651 7 8 -0.3374 2.6371 0.4324 8 6 0.0408 3.3483 2.6507 9 6 -1.3546 3.9015 2.5170 10 6 -1.5453 5.1908 2.0535 11 6 -2.8243 5.7003 1.9250 12 6 -3.9153 4.9265 2.2692 13 6 -3.7270 3.6337 2.7398 14 8 -4.7973 2.8709 3.0794 15 6 -6.0075 3.4642 3.0454 16 1 -6.1027 4.4759 2.6794 17 6 -7.1298 2.7758 3.4801 18 7 -7.0137 1.5436 3.9263 19 14 -8.8063 3.5982 3.4336 20 1 -9.1350 3.9732 2.0348 21 1 -9.8335 2.6578 3.9489 22 1 -8.7831 4.8178 4.2806 23 6 -2.4412 3.1229 2.8628 24 6 3.5418 1.4443 -0.1238 25 7 4.3912 1.1444 0.8129 26 8 5.5264 1.2415 0.3971 27 6 5.5088 1.6238 -0.8833 28 6 6.7070 1.8583 -1.7666 29 7 4.2493 1.7504 -1.2259 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.2719 2.1231 1.9978 36 1 0.0692 2.6263 3.4668 37 1 0.7352 4.1618 2.8609 38 1 -0.6935 5.7995 1.7883 39 1 -2.9701 6.7058 1.5589 40 1 -4.9139 5.3265 2.1728 41 1 -7.7988 1.0621 4.2308 42 1 -2.2915 2.1177 3.2283 43 1 7.6187 1.6681 -1.2003 44 1 6.6643 1.1856 -2.6232 45 1 6.7048 2.8911 -2.1153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089773642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:45 Heat of formation + Delta-G solvation = 27.843071 kcal Electronic energy + Delta-G solvation = -29128.618729 eV Core-core repulsion = 24922.457700 eV Total energy + Delta-G solvation = -4206.161030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.03498 -40.15535 -38.85520 -37.12459 -36.35214 -35.48572 -33.53380 -32.79830 -32.24532 -31.65992 -29.40648 -29.15422 -28.03114 -26.57495 -25.16882 -24.08545 -22.69202 -21.91478 -21.48836 -20.61143 -20.23752 -18.56100 -18.13763 -17.58369 -17.00904 -16.83916 -16.44236 -15.70703 -15.09271 -14.99151 -14.69910 -14.57084 -14.34490 -13.99654 -13.91959 -13.67178 -13.66303 -13.42321 -13.22818 -13.00600 -12.56604 -12.53791 -12.36804 -12.16333 -11.81806 -11.66323 -11.57159 -11.47332 -11.44966 -11.21033 -10.94310 -10.78511 -10.73737 -10.57238 -10.42191 -10.34322 -9.73688 -9.28495 -9.22972 -8.77848 -8.01312 -7.15930 -6.38583 -3.97570 0.70638 1.72132 2.14091 2.37712 2.44971 2.71249 2.87319 3.17081 3.18186 3.20739 3.31214 3.64967 4.01685 4.42836 4.56980 4.66622 4.72599 4.74036 4.88982 4.94666 5.00716 5.11301 5.16098 5.24617 5.29114 5.32377 5.49514 5.54459 5.55173 5.68888 5.71800 5.80267 5.94519 5.98749 6.06137 6.22892 6.25012 6.39435 6.48143 6.71235 6.97466 7.12737 7.32056 7.36034 7.42854 7.49934 7.73139 7.88557 8.06439 8.25396 9.07087 9.78291 10.79606 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024037 B = 0.002004 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.573862 B =13970.796185 C =14575.800718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.240 3.760 4 H 0.119 0.881 5 N -0.733 5.733 6 C 0.518 3.482 7 O -0.506 6.506 8 C -0.093 4.093 9 C -0.032 4.032 10 C -0.196 4.196 11 C -0.075 4.075 12 C -0.230 4.230 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.173 4.173 24 C 0.169 3.831 25 N -0.375 5.375 26 O 0.080 5.920 27 C 0.179 3.821 28 C -0.062 4.062 29 N -0.475 5.475 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.269 0.412 -7.916 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.133 3.867 4 H 0.137 0.863 5 N -0.389 5.389 6 C 0.305 3.695 7 O -0.379 6.379 8 C -0.132 4.132 9 C -0.033 4.033 10 C -0.215 4.215 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.101 3.899 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.500 5.500 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.193 4.193 24 C -0.105 4.105 25 N -0.082 5.082 26 O 0.020 5.980 27 C -0.041 4.041 28 C -0.120 4.120 29 N -0.209 5.209 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 25.897 -0.180 -7.910 27.079 hybrid contribution -0.290 0.454 0.217 0.581 sum 25.608 0.274 -7.693 26.740 Atomic orbital electron populations 1.21802 0.92956 1.01510 1.03978 1.21947 0.98309 0.93679 1.02592 1.19114 0.81509 0.95897 0.90148 0.86322 1.46051 1.17994 1.59322 1.15492 1.20750 0.80495 0.77793 0.90435 1.90781 1.50053 1.56955 1.40080 1.20586 0.96355 1.00929 0.95368 1.18621 0.91674 0.93913 0.99108 1.20342 0.96394 0.95901 1.08878 1.20670 0.92384 0.98320 0.97910 1.21171 0.99409 0.95659 1.08716 1.19272 0.88464 0.89904 0.92231 1.83975 1.13000 1.36191 1.75145 1.21261 0.81377 0.99837 1.44210 0.89202 1.25268 0.99227 0.95848 0.96204 1.70037 1.30663 1.09852 1.39429 0.85795 0.80096 0.78646 0.78962 1.19543 1.20331 1.19557 1.19934 0.89735 1.00304 1.09298 1.25910 0.99806 0.99387 0.85379 1.74587 0.89871 1.20740 1.23032 1.85306 1.24363 1.62163 1.26190 1.28913 0.96089 0.94590 0.84541 1.20420 0.89704 1.05225 0.96653 1.71886 1.01326 1.20829 1.26859 0.91640 0.92805 0.91681 0.91032 0.91328 0.76333 0.88104 0.88382 0.88008 0.87513 0.85645 0.92077 0.86838 0.88368 0.87706 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.52 37.16 0.32 -1.65 16 2 C -0.13 -1.42 5.59 -26.73 -0.15 -1.57 16 3 C 0.24 2.82 2.80 -69.09 -0.19 2.63 16 4 H 0.12 1.58 7.57 -51.93 -0.39 1.18 16 5 N -0.73 -8.46 5.02 -54.94 -0.28 -8.74 16 6 C 0.52 7.48 6.40 -10.98 -0.07 7.41 16 7 O -0.51 -9.31 13.19 5.56 0.07 -9.23 16 8 C -0.09 -1.25 5.83 -29.03 -0.17 -1.42 16 9 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 10 C -0.20 -3.59 9.70 -39.53 -0.38 -3.97 16 11 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 12 C -0.23 -5.25 9.17 -39.40 -0.36 -5.62 16 13 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 14 O -0.18 -5.28 9.76 0.06 0.00 -5.28 16 15 C -0.39 -11.22 9.49 30.88 0.29 -10.92 16 16 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 19 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C -0.17 -3.82 9.65 -39.39 -0.38 -4.20 16 24 C 0.17 1.87 7.01 -156.37 -1.10 0.77 16 25 N -0.38 -3.98 11.86 30.90 0.37 -3.61 16 26 O 0.08 0.69 11.31 18.10 0.20 0.90 16 27 C 0.18 1.30 8.51 -13.06 -0.11 1.18 16 28 C -0.06 -0.12 10.51 36.00 0.38 0.26 16 29 N -0.47 -4.95 11.55 -9.87 -0.11 -5.06 16 30 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.01 5.66 -51.93 -0.29 0.72 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 3.87 8.36 -40.82 -0.34 3.53 16 36 H 0.10 1.18 8.08 -51.93 -0.42 0.76 16 37 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 43 H 0.10 -0.02 8.14 -51.93 -0.42 -0.45 16 44 H 0.10 0.10 8.14 -51.93 -0.42 -0.33 16 45 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -35.77 384.73 -7.13 -42.90 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.78 Total: 6.84 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.14 Total: -15.38 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.74 Total: -42.53 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.28 Total: -13.62 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.77 -7.13 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089773642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.743 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds