Wall clock time and date at job start Wed Apr 1 2020 03:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47023 * 2 1 4 4 H 1.08995 * 109.47421 * 304.99656 * 3 2 1 5 5 N 1.46497 * 109.46968 * 65.00243 * 3 2 1 6 6 C 1.34781 * 119.99756 * 274.72375 * 5 3 2 7 7 O 1.21272 * 120.00215 * 0.27069 * 6 5 3 8 8 C 1.50703 * 119.99742 * 180.27963 * 6 5 3 9 9 C 1.50705 * 109.46676 * 179.97438 * 8 6 5 10 10 C 1.38327 * 119.96363 * 269.71913 * 9 8 6 11 11 C 1.38279 * 120.13702 * 179.77068 * 10 9 8 12 12 C 1.38118 * 120.06661 * 0.50696 * 11 10 9 13 13 C 1.38855 * 119.93407 * 359.74677 * 12 11 10 14 14 O 1.35749 * 120.07001 * 179.97438 * 13 12 11 15 15 C 1.34828 * 117.00413 * 354.49741 * 14 13 12 16 16 H 1.08002 * 119.99386 * 5.05210 * 15 14 13 17 17 C 1.38649 * 120.00623 * 185.04993 * 15 14 13 18 18 N 1.31564 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00414 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46790 * 60.00243 * 19 17 15 21 21 H 1.48496 * 109.47242 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47140 * 300.00264 * 19 17 15 23 23 C 1.38077 * 119.96554 * 89.99712 * 9 8 6 24 24 C 1.50697 * 109.47118 * 184.99840 * 3 2 1 25 25 N 1.29952 * 126.29099 * 285.02977 * 24 3 2 26 26 O 1.21292 * 110.25483 * 179.97438 * 25 24 3 27 27 C 1.33645 * 109.81248 * 359.97438 * 26 25 24 28 28 C 1.50697 * 126.55389 * 180.02562 * 27 26 25 29 29 N 1.31132 * 106.89298 * 359.76758 * 27 26 25 30 30 H 1.09003 * 109.47501 * 60.00084 * 1 2 3 31 31 H 1.09006 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47234 * 299.99811 * 1 2 3 33 33 H 1.09001 * 109.47024 * 239.99678 * 2 1 3 34 34 H 1.09000 * 109.46983 * 120.00460 * 2 1 3 35 35 H 0.96996 * 120.00243 * 95.00135 * 5 3 2 36 36 H 1.09000 * 109.47063 * 299.99525 * 8 6 5 37 37 H 1.08998 * 109.47445 * 60.00109 * 8 6 5 38 38 H 1.08000 * 119.92824 * 359.97438 * 10 9 8 39 39 H 1.07996 * 119.96162 * 180.25565 * 11 10 9 40 40 H 1.08004 * 120.03339 * 179.72618 * 12 11 10 41 41 H 0.97003 * 119.99793 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.03635 * 359.95965 * 23 9 8 43 43 H 1.08998 * 109.47474 * 359.97144 * 28 27 26 44 44 H 1.09001 * 109.47403 * 119.97130 * 28 27 26 45 45 H 1.09007 * 109.47061 * 239.97432 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4371 2.6691 1.3651 7 8 -0.3374 2.6371 0.4324 8 6 0.0408 3.3483 2.6507 9 6 -1.3546 3.9015 2.5170 10 6 -1.5453 5.1908 2.0535 11 6 -2.8243 5.7003 1.9250 12 6 -3.9153 4.9265 2.2692 13 6 -3.7270 3.6337 2.7398 14 8 -4.7973 2.8709 3.0794 15 6 -6.0075 3.4642 3.0454 16 1 -6.1027 4.4759 2.6794 17 6 -7.1298 2.7758 3.4801 18 7 -7.0137 1.5436 3.9263 19 14 -8.8063 3.5982 3.4336 20 1 -9.1350 3.9732 2.0348 21 1 -9.8335 2.6578 3.9489 22 1 -8.7831 4.8178 4.2806 23 6 -2.4412 3.1229 2.8628 24 6 3.5418 1.4443 -0.1238 25 7 4.3912 1.1444 0.8129 26 8 5.5264 1.2415 0.3971 27 6 5.5088 1.6238 -0.8833 28 6 6.7070 1.8583 -1.7666 29 7 4.2493 1.7504 -1.2259 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.2719 2.1231 1.9978 36 1 0.0692 2.6263 3.4668 37 1 0.7352 4.1618 2.8609 38 1 -0.6935 5.7995 1.7883 39 1 -2.9701 6.7058 1.5589 40 1 -4.9139 5.3265 2.1728 41 1 -7.7988 1.0621 4.2308 42 1 -2.2915 2.1177 3.2283 43 1 7.6187 1.6681 -1.2003 44 1 6.6643 1.1856 -2.6232 45 1 6.7048 2.8911 -2.1153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089773642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:44 Heat of formation + Delta-G solvation = 1.442414 kcal Electronic energy + Delta-G solvation = -29129.763548 eV Core-core repulsion = 24922.457700 eV Total energy + Delta-G solvation = -4207.305848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.74012 -41.37352 -40.56505 -38.45954 -37.70072 -36.32623 -34.35966 -34.20952 -33.90078 -33.01611 -30.88764 -29.82275 -29.18748 -27.88432 -27.16371 -24.83107 -23.52536 -23.36577 -23.03629 -21.85351 -21.38413 -19.54607 -19.26500 -18.97644 -18.65973 -17.86696 -17.52228 -16.94537 -16.65828 -16.28910 -16.09227 -15.75475 -15.50716 -15.44699 -15.06575 -15.05371 -14.54423 -14.25492 -14.19182 -14.13867 -13.99759 -13.89143 -13.58233 -13.12049 -12.98329 -12.95454 -12.84203 -12.61949 -12.49587 -12.42142 -12.38519 -12.22471 -12.19439 -12.13398 -11.98709 -11.20793 -11.08510 -10.90229 -10.78543 -10.28593 -9.64401 -8.97850 -8.46546 -6.15099 0.07256 0.50691 0.75791 1.00313 1.33651 1.44966 1.50322 1.58793 1.85985 1.93561 2.17894 2.47964 2.83315 2.99393 3.17999 3.43593 3.67103 3.75324 3.79275 4.00091 4.03762 4.10495 4.28162 4.31390 4.40756 4.44775 4.48557 4.57838 4.60717 4.62965 4.66408 4.70741 4.73842 4.87522 4.92259 4.99440 5.06426 5.12849 5.14880 5.24179 5.30704 5.34184 5.64921 5.72773 5.75170 6.02958 6.21983 6.39356 6.97788 7.05328 7.17697 7.79456 8.76671 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024037 B = 0.002004 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.573862 B =13970.796185 C =14575.800718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.243 3.757 4 H 0.100 0.900 5 N -0.716 5.716 6 C 0.522 3.478 7 O -0.553 6.553 8 C -0.091 4.091 9 C -0.024 4.024 10 C -0.180 4.180 11 C -0.073 4.073 12 C -0.246 4.246 13 C 0.112 3.888 14 O -0.234 6.234 15 C -0.414 4.414 16 H 0.100 0.900 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.256 1.256 23 C -0.190 4.190 24 C 0.158 3.842 25 N -0.386 5.386 26 O 0.082 5.918 27 C 0.195 3.805 28 C -0.062 4.062 29 N -0.508 5.508 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.415 0.585 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.681 2.411 -8.607 31.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.137 3.863 4 H 0.118 0.882 5 N -0.371 5.371 6 C 0.309 3.691 7 O -0.429 6.429 8 C -0.130 4.130 9 C -0.025 4.025 10 C -0.198 4.198 11 C -0.091 4.091 12 C -0.265 4.265 13 C 0.062 3.938 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.117 0.883 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.180 1.180 23 C -0.209 4.209 24 C -0.115 4.115 25 N -0.094 5.094 26 O 0.021 5.979 27 C -0.024 4.024 28 C -0.120 4.120 29 N -0.243 5.243 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.251 0.749 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 29.400 1.844 -8.605 30.689 hybrid contribution -0.922 -0.082 0.317 0.979 sum 28.478 1.762 -8.288 29.712 Atomic orbital electron populations 1.21716 0.94761 1.01323 1.01964 1.21854 0.96400 0.93841 1.03482 1.18941 0.82416 0.95606 0.89377 0.88163 1.45848 1.17247 1.58115 1.15928 1.20832 0.80691 0.77498 0.90031 1.90782 1.51480 1.58983 1.41690 1.20687 0.93964 1.02811 0.95516 1.19104 0.93086 0.93708 0.96554 1.20953 0.97310 0.95868 1.05711 1.21117 0.91824 0.99552 0.96633 1.21292 1.00451 0.95292 1.09457 1.19871 0.88697 0.91286 0.93945 1.83935 1.14063 1.38143 1.77932 1.21776 0.81963 1.00546 1.44740 0.88269 1.26611 1.03624 0.96495 0.95439 1.70191 1.32076 1.11917 1.41802 0.84644 0.74022 0.77869 0.79631 1.18342 1.19491 1.18007 1.20193 0.89910 1.00705 1.10089 1.25669 0.99315 1.00463 0.86078 1.74566 0.90355 1.21111 1.23347 1.85281 1.23469 1.62166 1.26958 1.29894 0.96547 0.91882 0.84051 1.20811 0.88437 1.06288 0.96458 1.71888 1.02717 1.22565 1.27089 0.93346 0.92052 0.93954 0.89879 0.90594 0.74865 0.86058 0.84110 0.83685 0.83754 0.86449 0.91880 0.87571 0.85685 0.86277 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 8.52 71.98 0.61 -3.30 16 2 C -0.12 -2.58 5.59 30.59 0.17 -2.41 16 3 C 0.24 5.56 2.80 44.24 0.12 5.68 16 4 H 0.10 2.70 7.57 -2.39 -0.02 2.68 16 5 N -0.72 -15.45 5.02 -446.12 -2.24 -17.69 16 6 C 0.52 14.34 6.40 87.66 0.56 14.90 16 7 O -0.55 -20.38 13.19 -3.01 -0.04 -20.42 16 8 C -0.09 -2.19 5.83 29.10 0.17 -2.02 16 9 C -0.02 -0.84 4.37 -19.88 -0.09 -0.93 16 10 C -0.18 -6.00 9.70 22.30 0.22 -5.79 16 11 C -0.07 -2.71 10.04 22.25 0.22 -2.49 16 12 C -0.25 -11.45 9.17 22.39 0.21 -11.25 16 13 C 0.11 5.95 6.65 22.58 0.15 6.10 16 14 O -0.23 -14.80 9.76 -22.71 -0.22 -15.02 16 15 C -0.41 -25.18 9.49 67.92 0.64 -24.54 16 16 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 17 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 18 N -0.92 -58.34 13.67 21.61 0.30 -58.04 16 19 Si 1.02 44.38 29.55 68.60 2.03 46.41 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 C -0.19 -8.63 9.65 22.39 0.22 -8.41 16 24 C 0.16 3.29 7.01 138.46 0.97 4.26 16 25 N -0.39 -7.47 11.86 -60.32 -0.72 -8.18 16 26 O 0.08 1.23 11.31 74.83 0.85 2.08 16 27 C 0.20 2.34 8.51 88.38 0.75 3.09 16 28 C -0.06 -0.02 10.51 71.23 0.75 0.73 16 29 N -0.51 -9.79 11.55 -303.19 -3.50 -13.29 16 30 H 0.05 1.49 7.85 -2.39 -0.02 1.47 16 31 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.04 1.36 5.66 -2.39 -0.01 1.35 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.41 6.99 8.36 -92.71 -0.77 6.21 16 36 H 0.12 2.51 8.08 -2.39 -0.02 2.49 16 37 H 0.14 2.27 8.08 -2.39 -0.02 2.25 16 38 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 39 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 41 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 42 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.12 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.12 -0.18 8.14 -2.38 -0.02 -0.20 16 Total: -1.00 -85.69 384.73 2.86 -82.83 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.27 Total: 28.68 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 6.14 Total: -27.35 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -6.16 Total: -97.21 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: 0.58 Total: -33.36 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -85.69 2.86 -82.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089773642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.272 kcal (2) G-P(sol) polarization free energy of solvation -85.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds