Wall clock time and date at job start Wed Apr 1 2020 03:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46954 * 2 1 4 4 N 1.46503 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99931 * 274.98760 * 4 3 2 6 6 H 1.07996 * 119.99608 * 337.41786 * 5 4 3 7 7 C 1.38806 * 119.99897 * 157.41427 * 5 4 3 8 8 N 1.31621 * 120.00079 * 8.28032 * 7 5 4 9 9 Si 1.86799 * 120.00032 * 188.27987 * 7 5 4 10 10 H 1.48506 * 109.47249 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47439 * 120.00168 * 9 7 5 12 12 H 1.48499 * 109.47238 * 240.00336 * 9 7 5 13 13 C 1.46495 * 120.00194 * 94.98930 * 4 3 2 14 14 C 1.50707 * 109.46848 * 269.99870 * 13 4 3 15 15 N 1.29820 * 118.32003 * 0.02562 * 14 13 4 16 16 C 1.35678 * 121.65021 * 179.97438 * 15 14 13 17 17 C 1.39613 * 121.56558 * 180.02562 * 16 15 14 18 18 C 1.38985 * 119.42436 * 179.97438 * 17 16 15 19 19 C 1.47950 * 119.76609 * 179.97438 * 18 17 16 20 20 O 1.21451 * 119.99723 * 0.02562 * 19 18 17 21 21 O 1.34684 * 120.00697 * 180.02562 * 19 18 17 22 22 C 1.45193 * 117.00636 * 179.97438 * 21 19 18 23 23 C 1.40049 * 120.47232 * 0.02562 * 18 17 16 24 24 C 1.36583 * 120.57730 * 359.97438 * 23 18 17 25 25 C 1.39373 * 119.84912 * 0.02562 * 24 23 18 26 26 C 1.47285 * 121.79383 * 180.02562 * 25 24 23 27 27 O 1.21703 * 121.29558 * 359.97291 * 26 25 24 28 28 N 1.35339 * 117.40842 * 179.71203 * 26 25 24 29 29 H 0.96991 * 119.69179 * 180.26459 * 28 26 25 30 30 H 1.08998 * 109.47190 * 60.00208 * 1 2 3 31 31 H 1.09004 * 109.46642 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46916 * 299.99773 * 1 2 3 33 33 H 1.09000 * 109.46916 * 240.00227 * 2 1 3 34 34 H 1.09004 * 109.46799 * 119.99883 * 2 1 3 35 35 H 1.09000 * 109.47123 * 60.00354 * 3 2 1 36 36 H 1.08998 * 109.47002 * 299.99907 * 3 2 1 37 37 H 0.97002 * 119.99768 * 180.02562 * 8 7 5 38 38 H 1.08997 * 109.47154 * 150.00208 * 13 4 3 39 39 H 1.09000 * 109.47381 * 29.99651 * 13 4 3 40 40 H 1.07999 * 120.28878 * 359.96211 * 17 16 15 41 41 H 1.09000 * 109.47351 * 300.00668 * 22 21 19 42 42 H 1.09007 * 109.46866 * 59.99727 * 22 21 19 43 43 H 1.08994 * 109.47349 * 180.02562 * 22 21 19 44 44 H 1.08006 * 119.71599 * 179.97438 * 23 18 17 45 45 H 1.07999 * 120.07947 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3392 1.1806 6 1 3.7127 1.6187 2.1080 7 6 5.4985 0.8753 1.1857 8 7 6.1354 0.6897 0.0489 9 14 6.3551 0.5145 2.8060 10 1 5.4293 0.8036 3.9306 11 1 6.7538 -0.9154 2.8475 12 1 7.5635 1.3690 2.9281 13 6 4.2370 1.5530 -1.2648 14 6 4.4880 0.1754 -1.8220 15 7 4.0518 -0.8482 -1.1533 16 6 4.2397 -2.1181 -1.5926 17 6 3.7693 -3.2177 -0.8723 18 6 3.9862 -4.4995 -1.3640 19 6 3.4915 -5.6702 -0.6066 20 8 2.8978 -5.5092 0.4406 21 8 3.6994 -6.9145 -1.0783 22 6 3.1869 -8.0154 -0.2825 23 6 4.6707 -4.6909 -2.5707 24 6 5.1350 -3.6221 -3.2832 25 6 4.9279 -2.3285 -2.8075 26 6 5.4096 -1.1456 -3.5410 27 8 6.0093 -1.2558 -4.5943 28 7 5.1545 0.0688 -3.0010 29 1 5.4533 0.8703 -3.4582 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 7.0495 0.3651 0.0526 38 1 5.1895 2.0535 -1.0905 39 1 3.6477 2.1310 -1.9766 40 1 3.2417 -3.0736 0.0589 41 1 3.6481 -7.9957 0.7049 42 1 2.1060 -7.9177 -0.1806 43 1 3.4220 -8.9594 -0.7741 44 1 4.8328 -5.6923 -2.9413 45 1 5.6615 -3.7790 -4.2131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103469521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:45 Heat of formation + Delta-G solvation = -40.962173 kcal Electronic energy + Delta-G solvation = -31257.375467 eV Core-core repulsion = 27048.230818 eV Total energy + Delta-G solvation = -4209.144649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.93013 -40.26776 -37.84213 -37.43340 -36.37127 -35.76973 -33.13354 -32.86234 -31.25889 -30.83331 -29.62154 -28.04369 -26.90007 -25.63945 -24.96851 -23.16162 -21.82612 -21.57676 -21.19850 -20.03855 -18.92243 -18.29545 -17.53839 -17.07696 -16.60758 -16.35051 -16.04438 -15.45876 -15.10080 -14.92625 -14.45532 -14.25307 -13.94966 -13.78455 -13.59922 -13.46183 -13.27460 -13.04608 -12.67962 -12.52280 -12.33174 -12.19984 -12.01063 -11.59508 -11.39211 -11.22955 -11.08819 -10.90141 -10.85624 -10.64555 -10.53507 -10.44600 -10.22498 -10.03824 -9.86358 -9.77584 -9.60888 -8.92560 -8.80910 -8.78302 -7.36047 -7.06182 -6.05607 -3.40181 0.57660 1.30982 2.37254 2.64462 2.87298 3.28898 3.34089 3.38314 3.40149 3.48024 4.33034 4.59478 4.67496 4.78562 4.87853 4.99761 5.07775 5.09117 5.20467 5.31302 5.36843 5.38627 5.58576 5.77555 5.78021 5.80274 5.91806 6.12448 6.15995 6.18284 6.24508 6.31833 6.39793 6.47954 6.53055 6.53893 6.60139 6.71148 6.88488 6.99335 7.07984 7.13942 7.33320 7.38267 7.56460 7.76230 8.11897 8.30845 8.89509 9.05614 9.57290 10.01825 11.01210 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.004520 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.716648 B = 6192.595677 C = 6853.752636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.150 3.850 4 N -0.568 5.568 5 C -0.215 4.215 6 H 0.079 0.921 7 C 0.004 3.996 8 N -0.913 5.913 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.292 1.292 13 C 0.213 3.787 14 C 0.441 3.559 15 N -0.493 5.493 16 C 0.187 3.813 17 C -0.055 4.055 18 C -0.085 4.085 19 C 0.510 3.490 20 O -0.501 6.501 21 O -0.355 6.355 22 C 0.036 3.964 23 C -0.129 4.129 24 C -0.044 4.044 25 C -0.205 4.205 26 C 0.551 3.449 27 O -0.543 6.543 28 N -0.646 5.646 29 H 0.411 0.589 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.256 0.744 38 H 0.129 0.871 39 H 0.039 0.961 40 H 0.147 0.853 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.135 0.865 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.631 -6.741 -4.915 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.024 3.976 4 N -0.285 5.285 5 C -0.343 4.343 6 H 0.097 0.903 7 C -0.192 4.192 8 N -0.560 5.560 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.219 1.219 13 C 0.082 3.918 14 C 0.176 3.824 15 N -0.214 5.214 16 C 0.072 3.928 17 C -0.074 4.074 18 C -0.088 4.088 19 C 0.354 3.646 20 O -0.389 6.389 21 O -0.271 6.271 22 C -0.057 4.057 23 C -0.148 4.148 24 C -0.064 4.064 25 C -0.213 4.213 26 C 0.344 3.656 27 O -0.421 6.421 28 N -0.288 5.288 29 H 0.248 0.752 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.147 0.853 39 H 0.057 0.943 40 H 0.165 0.835 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.153 0.847 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.790 -6.973 -4.311 10.036 hybrid contribution 1.278 -0.662 0.216 1.455 sum -4.512 -7.635 -4.095 9.768 Atomic orbital electron populations 1.21805 0.98350 1.00313 1.00367 1.22149 0.92222 0.99978 1.03396 1.20976 0.83638 0.94398 0.98571 1.43841 1.00058 1.82501 1.02086 1.19413 0.95141 1.33624 0.86140 0.90283 1.24807 0.97959 0.99342 0.97053 1.69539 1.11594 1.50897 1.23963 0.86049 0.78975 0.77940 0.82786 1.20306 1.21628 1.21949 1.20180 0.99314 0.86188 0.86110 1.24876 0.80518 1.00081 0.76952 1.68808 1.28724 0.94968 1.28948 1.18981 0.91192 0.92978 0.89644 1.20907 0.98214 0.88550 0.99769 1.18994 1.03007 0.90413 0.96377 1.21356 0.76470 0.83246 0.83492 1.90841 1.38583 1.86464 1.22986 1.86543 1.73470 1.15402 1.51715 1.23262 0.99711 0.86814 0.95952 1.20778 1.00148 0.99441 0.94419 1.20553 0.96369 0.90388 0.99052 1.20790 1.07354 0.94363 0.98767 1.18405 0.78959 0.83612 0.84642 1.90807 1.42153 1.86192 1.22910 1.44636 1.51732 1.09884 1.22568 0.75226 0.93911 0.93929 0.93658 0.91368 0.91945 0.93758 0.94417 0.93323 0.85336 0.94337 0.83503 0.91851 0.91844 0.88094 0.84709 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.14 -2.45 5.52 -26.73 -0.15 -2.60 16 3 C 0.15 2.69 5.72 -4.04 -0.02 2.67 16 4 N -0.57 -11.80 1.96 -174.61 -0.34 -12.15 16 5 C -0.21 -5.04 9.66 -15.06 -0.15 -5.19 16 6 H 0.08 1.87 7.84 -52.49 -0.41 1.46 16 7 C 0.00 0.09 5.39 -17.43 -0.09 -0.01 16 8 N -0.91 -22.27 8.15 55.49 0.45 -21.81 16 9 Si 0.91 20.72 29.56 -169.99 -5.03 15.70 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.21 4.06 5.39 -5.19 -0.03 4.03 16 14 C 0.44 8.65 5.60 -155.23 -0.87 7.78 16 15 N -0.49 -10.37 6.38 -8.21 -0.05 -10.42 16 16 C 0.19 3.78 6.62 -84.52 -0.56 3.22 16 17 C -0.05 -1.04 9.57 -38.79 -0.37 -1.41 16 18 C -0.09 -1.43 5.87 -104.96 -0.62 -2.05 16 19 C 0.51 8.20 7.90 34.71 0.27 8.48 16 20 O -0.50 -9.19 16.10 -19.23 -0.31 -9.50 16 21 O -0.35 -4.69 9.78 -40.45 -0.40 -5.09 16 22 C 0.04 0.35 10.56 101.05 1.07 1.42 16 23 C -0.13 -1.94 9.54 -39.50 -0.38 -2.31 16 24 C -0.04 -0.73 9.61 -39.76 -0.38 -1.11 16 25 C -0.21 -3.93 5.90 -104.67 -0.62 -4.55 16 26 C 0.55 10.75 8.00 -12.33 -0.10 10.65 16 27 O -0.54 -11.30 17.46 5.19 0.09 -11.21 16 28 N -0.65 -11.56 5.27 -10.40 -0.05 -11.62 16 29 H 0.41 6.20 8.75 -40.82 -0.36 5.84 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.31 6.16 -51.93 -0.32 0.99 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.04 0.61 7.83 -51.93 -0.41 0.20 16 37 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 38 H 0.13 2.69 6.26 -51.93 -0.32 2.36 16 39 H 0.04 0.62 7.86 -51.93 -0.41 0.21 16 40 H 0.15 2.92 7.62 -52.49 -0.40 2.52 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.14 1.66 7.57 -52.48 -0.40 1.27 16 45 H 0.13 2.01 7.81 -52.49 -0.41 1.60 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -28.57 377.84 -8.51 -37.08 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.95 Total: 6.14 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: -2.62 Total: 17.18 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.00 Total: -56.00 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.61 Total: -25.80 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.57 -8.51 -37.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103469521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.885 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds