Wall clock time and date at job start Wed Apr 1 2020 03:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46954 * 2 1 4 4 N 1.46503 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99931 * 274.98760 * 4 3 2 6 6 H 1.07996 * 119.99608 * 337.41786 * 5 4 3 7 7 C 1.38806 * 119.99897 * 157.41427 * 5 4 3 8 8 N 1.31621 * 120.00079 * 8.28032 * 7 5 4 9 9 Si 1.86799 * 120.00032 * 188.27987 * 7 5 4 10 10 H 1.48506 * 109.47249 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47439 * 120.00168 * 9 7 5 12 12 H 1.48499 * 109.47238 * 240.00336 * 9 7 5 13 13 C 1.46495 * 120.00194 * 94.98930 * 4 3 2 14 14 C 1.50707 * 109.46848 * 269.99870 * 13 4 3 15 15 N 1.29820 * 118.32003 * 0.02562 * 14 13 4 16 16 C 1.35678 * 121.65021 * 179.97438 * 15 14 13 17 17 C 1.39613 * 121.56558 * 180.02562 * 16 15 14 18 18 C 1.38985 * 119.42436 * 179.97438 * 17 16 15 19 19 C 1.47950 * 119.76609 * 179.97438 * 18 17 16 20 20 O 1.21451 * 119.99723 * 0.02562 * 19 18 17 21 21 O 1.34684 * 120.00697 * 180.02562 * 19 18 17 22 22 C 1.45193 * 117.00636 * 179.97438 * 21 19 18 23 23 C 1.40049 * 120.47232 * 0.02562 * 18 17 16 24 24 C 1.36583 * 120.57730 * 359.97438 * 23 18 17 25 25 C 1.39373 * 119.84912 * 0.02562 * 24 23 18 26 26 C 1.47285 * 121.79383 * 180.02562 * 25 24 23 27 27 O 1.21703 * 121.29558 * 359.97291 * 26 25 24 28 28 N 1.35339 * 117.40842 * 179.71203 * 26 25 24 29 29 H 0.96991 * 119.69179 * 180.26459 * 28 26 25 30 30 H 1.08998 * 109.47190 * 60.00208 * 1 2 3 31 31 H 1.09004 * 109.46642 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46916 * 299.99773 * 1 2 3 33 33 H 1.09000 * 109.46916 * 240.00227 * 2 1 3 34 34 H 1.09004 * 109.46799 * 119.99883 * 2 1 3 35 35 H 1.09000 * 109.47123 * 60.00354 * 3 2 1 36 36 H 1.08998 * 109.47002 * 299.99907 * 3 2 1 37 37 H 0.97002 * 119.99768 * 180.02562 * 8 7 5 38 38 H 1.08997 * 109.47154 * 150.00208 * 13 4 3 39 39 H 1.09000 * 109.47381 * 29.99651 * 13 4 3 40 40 H 1.07999 * 120.28878 * 359.96211 * 17 16 15 41 41 H 1.09000 * 109.47351 * 300.00668 * 22 21 19 42 42 H 1.09007 * 109.46866 * 59.99727 * 22 21 19 43 43 H 1.08994 * 109.47349 * 180.02562 * 22 21 19 44 44 H 1.08006 * 119.71599 * 179.97438 * 23 18 17 45 45 H 1.07999 * 120.07947 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3392 1.1806 6 1 3.7127 1.6187 2.1080 7 6 5.4985 0.8753 1.1857 8 7 6.1354 0.6897 0.0489 9 14 6.3551 0.5145 2.8060 10 1 5.4293 0.8036 3.9306 11 1 6.7538 -0.9154 2.8475 12 1 7.5635 1.3690 2.9281 13 6 4.2370 1.5530 -1.2648 14 6 4.4880 0.1754 -1.8220 15 7 4.0518 -0.8482 -1.1533 16 6 4.2397 -2.1181 -1.5926 17 6 3.7693 -3.2177 -0.8723 18 6 3.9862 -4.4995 -1.3640 19 6 3.4915 -5.6702 -0.6066 20 8 2.8978 -5.5092 0.4406 21 8 3.6994 -6.9145 -1.0783 22 6 3.1869 -8.0154 -0.2825 23 6 4.6707 -4.6909 -2.5707 24 6 5.1350 -3.6221 -3.2832 25 6 4.9279 -2.3285 -2.8075 26 6 5.4096 -1.1456 -3.5410 27 8 6.0093 -1.2558 -4.5943 28 7 5.1545 0.0688 -3.0010 29 1 5.4533 0.8703 -3.4582 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 7.0495 0.3651 0.0526 38 1 5.1895 2.0535 -1.0905 39 1 3.6477 2.1310 -1.9766 40 1 3.2417 -3.0736 0.0589 41 1 3.6481 -7.9957 0.7049 42 1 2.1060 -7.9177 -0.1806 43 1 3.4220 -8.9594 -0.7741 44 1 4.8328 -5.6923 -2.9413 45 1 5.6615 -3.7790 -4.2131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103469521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:44 Heat of formation + Delta-G solvation = -55.477358 kcal Electronic energy + Delta-G solvation = -31258.004892 eV Core-core repulsion = 27048.230818 eV Total energy + Delta-G solvation = -4209.774075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.38615 -41.53293 -39.25845 -38.95842 -37.58848 -37.30138 -34.63847 -34.36168 -32.69144 -32.42745 -31.09206 -29.11862 -28.28674 -27.19703 -26.28778 -24.67795 -23.21360 -23.01851 -22.58625 -21.53447 -20.27330 -19.73284 -19.02362 -18.59017 -17.95938 -17.47884 -17.38642 -17.08790 -16.57612 -16.53072 -15.89190 -15.74331 -15.47273 -15.16763 -14.90040 -14.76809 -14.59381 -14.51076 -14.14804 -13.86441 -13.69975 -13.47481 -13.16251 -13.12073 -12.91896 -12.74800 -12.65823 -12.48237 -12.13687 -12.06602 -11.87151 -11.84180 -11.80944 -11.72623 -11.37866 -11.24048 -11.04912 -10.60700 -10.33821 -10.28779 -8.87744 -8.70430 -7.87361 -5.20507 -0.82872 -0.11179 1.01119 1.38327 1.43463 1.51610 1.51812 1.54083 1.89374 2.09794 2.53103 3.10324 3.23570 3.36811 3.42430 3.58192 3.69430 3.81931 4.03568 4.17486 4.29720 4.32524 4.37098 4.43537 4.47607 4.59863 4.69279 4.78218 4.80491 4.87308 4.92096 4.97876 5.10331 5.11477 5.15633 5.20417 5.27792 5.39145 5.43318 5.51567 5.62744 5.67143 5.68299 5.85142 5.93112 6.37672 6.54320 6.83369 7.17710 7.49659 7.89704 8.28301 9.15480 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.004520 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.716648 B = 6192.595677 C = 6853.752636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.150 3.850 4 N -0.579 5.579 5 C -0.215 4.215 6 H 0.072 0.928 7 C -0.028 4.028 8 N -0.919 5.919 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.314 1.314 12 H -0.295 1.295 13 C 0.213 3.787 14 C 0.441 3.559 15 N -0.513 5.513 16 C 0.164 3.836 17 C -0.072 4.072 18 C -0.083 4.083 19 C 0.515 3.485 20 O -0.529 6.529 21 O -0.348 6.348 22 C 0.027 3.973 23 C -0.103 4.103 24 C -0.043 4.043 25 C -0.217 4.217 26 C 0.548 3.452 27 O -0.558 6.558 28 N -0.637 5.637 29 H 0.423 0.577 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.241 0.759 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.127 0.873 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.141 0.859 44 H 0.174 0.826 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 -8.104 -6.523 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.025 3.975 4 N -0.297 5.297 5 C -0.345 4.345 6 H 0.090 0.910 7 C -0.222 4.222 8 N -0.567 5.567 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.242 1.242 12 H -0.222 1.222 13 C 0.083 3.917 14 C 0.175 3.825 15 N -0.235 5.235 16 C 0.051 3.949 17 C -0.092 4.092 18 C -0.086 4.086 19 C 0.360 3.640 20 O -0.420 6.420 21 O -0.263 6.263 22 C -0.065 4.065 23 C -0.121 4.121 24 C -0.062 4.062 25 C -0.224 4.224 26 C 0.341 3.659 27 O -0.438 6.438 28 N -0.279 5.279 29 H 0.262 0.738 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.145 0.855 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.159 0.841 44 H 0.191 0.809 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.667 -8.350 -5.940 12.225 hybrid contribution 1.469 -0.437 0.654 1.667 sum -5.198 -8.787 -5.286 11.497 Atomic orbital electron populations 1.21713 0.95673 1.00841 1.01740 1.21974 0.94475 0.99389 1.00891 1.21087 0.82098 0.94491 0.99847 1.43950 1.01175 1.82747 1.01800 1.19441 0.95046 1.32944 0.87110 0.90993 1.25127 0.98698 1.00436 0.97953 1.69709 1.10793 1.52162 1.24069 0.85520 0.78457 0.76073 0.82201 1.19813 1.24242 1.22208 1.20200 0.99076 0.86105 0.86313 1.24899 0.80335 1.00007 0.77285 1.68759 1.29366 0.95715 1.29626 1.19119 0.92344 0.92944 0.90526 1.20803 0.99253 0.89639 0.99496 1.19157 1.02491 0.89983 0.96933 1.21211 0.75827 0.84091 0.82833 1.90835 1.39927 1.87016 1.24237 1.86522 1.73082 1.14817 1.51917 1.23667 0.99870 0.86780 0.96217 1.21146 0.97429 1.00827 0.92728 1.20844 0.96087 0.89520 0.99776 1.20992 1.07350 0.95541 0.98520 1.18510 0.78780 0.84106 0.84482 1.90793 1.43015 1.86469 1.23502 1.44488 1.51064 1.10198 1.22144 0.73757 0.92088 0.93871 0.92653 0.92930 0.95420 0.93570 0.91842 0.94878 0.87118 0.90487 0.85521 0.92063 0.91631 0.84069 0.80900 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.91 71.98 0.71 -3.24 16 2 C -0.13 -4.55 5.52 30.60 0.17 -4.38 16 3 C 0.15 5.23 5.72 86.38 0.49 5.72 16 4 N -0.58 -24.01 1.96 -706.35 -1.38 -25.39 16 5 C -0.22 -10.29 9.66 84.03 0.81 -9.48 16 6 H 0.07 3.46 7.84 -2.91 -0.02 3.44 16 7 C -0.03 -1.41 5.39 84.86 0.46 -0.95 16 8 N -0.92 -45.87 8.15 21.65 0.18 -45.70 16 9 Si 0.94 43.74 29.56 68.60 2.03 45.77 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 C 0.21 8.03 5.39 85.64 0.46 8.49 16 14 C 0.44 17.28 5.60 138.07 0.77 18.05 16 15 N -0.51 -21.97 6.38 -179.87 -1.15 -23.12 16 16 C 0.16 6.71 6.62 39.61 0.26 6.98 16 17 C -0.07 -2.80 9.57 22.78 0.22 -2.58 16 18 C -0.08 -2.70 5.87 -20.09 -0.12 -2.82 16 19 C 0.51 15.94 7.90 70.40 0.56 16.49 16 20 O -0.53 -19.42 16.10 20.00 0.32 -19.10 16 21 O -0.35 -8.22 9.78 -55.93 -0.55 -8.77 16 22 C 0.03 0.45 10.56 113.37 1.20 1.65 16 23 C -0.10 -2.80 9.54 22.32 0.21 -2.59 16 24 C -0.04 -1.32 9.61 22.16 0.21 -1.11 16 25 C -0.22 -8.16 5.90 -19.89 -0.12 -8.28 16 26 C 0.55 20.99 8.00 86.53 0.69 21.69 16 27 O -0.56 -22.60 17.46 -4.36 -0.08 -22.67 16 28 N -0.64 -22.47 5.27 -304.71 -1.61 -24.08 16 29 H 0.42 12.45 8.75 -92.71 -0.81 11.64 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 2.04 6.16 -2.39 -0.01 2.02 16 34 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.05 1.58 8.08 -2.39 -0.02 1.57 16 36 H 0.06 1.88 7.83 -2.39 -0.02 1.87 16 37 H 0.24 12.55 8.31 -92.71 -0.77 11.78 16 38 H 0.11 4.63 6.26 -2.39 -0.01 4.62 16 39 H 0.08 2.30 7.86 -2.39 -0.02 2.29 16 40 H 0.13 5.36 7.62 -2.91 -0.02 5.33 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.17 3.44 7.57 -2.91 -0.02 3.41 16 45 H 0.15 4.13 7.81 -2.91 -0.02 4.11 16 Total: -1.00 -63.29 377.84 4.99 -58.30 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.23 Total: 21.11 kcal Atomic # 6 Polarization: 36.65 SS G_CDS: 7.00 Total: 43.65 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -3.96 Total: -118.29 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.30 Total: -50.54 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -63.29 4.99 -58.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103469521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.825 kcal (2) G-P(sol) polarization free energy of solvation -63.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds