Wall clock time and date at job start Wed Apr 1 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47043 * 2 1 4 4 C 1.50701 * 109.47386 * 120.00027 * 2 1 3 5 5 N 1.29951 * 126.28482 * 299.97616 * 4 2 1 6 6 O 1.21302 * 110.24595 * 179.72530 * 5 4 2 7 7 C 1.33642 * 109.81246 * 0.46670 * 6 5 4 8 8 C 1.50700 * 126.54954 * 179.79952 * 7 6 5 9 9 C 1.53003 * 109.47358 * 269.69136 * 8 7 6 10 10 N 1.46496 * 109.47208 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99950 * 179.97438 * 10 9 8 12 12 O 1.21592 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.47536 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.39673 * 120.19308 * 0.27711 * 13 11 10 15 15 C 1.37829 * 119.91662 * 180.30027 * 14 13 11 16 16 C 1.38573 * 120.32162 * 359.69830 * 15 14 13 17 17 C 1.38023 * 120.40656 * 0.02562 * 16 15 14 18 18 C 1.38834 * 120.06654 * 0.02562 * 17 16 15 19 19 O 1.35526 * 120.15695 * 179.97438 * 18 17 16 20 20 C 1.34813 * 117.00333 * 5.59555 * 19 18 17 21 21 H 1.08003 * 119.99735 * 354.93364 * 20 19 18 22 22 C 1.38696 * 119.99881 * 174.93689 * 20 19 18 23 23 N 1.31516 * 120.00523 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99750 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47536 * 89.99765 * 24 22 20 26 26 H 1.48501 * 109.46863 * 210.00121 * 24 22 20 27 27 H 1.48507 * 109.47000 * 329.99535 * 24 22 20 28 28 N 1.31127 * 106.89848 * 359.54260 * 7 6 5 29 29 H 1.09004 * 109.46779 * 299.99933 * 1 2 3 30 30 H 1.08995 * 109.47185 * 60.00426 * 1 2 3 31 31 H 1.09002 * 109.46817 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46779 * 240.00067 * 2 1 3 33 33 H 1.08997 * 109.47099 * 59.99731 * 3 2 1 34 34 H 1.09000 * 109.46613 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46500 * 300.00228 * 3 2 1 36 36 H 1.08998 * 109.47033 * 149.68719 * 8 7 6 37 37 H 1.09006 * 109.47196 * 29.69008 * 8 7 6 38 38 H 1.08997 * 109.46877 * 59.99706 * 9 8 7 39 39 H 1.09006 * 109.46863 * 300.00076 * 9 8 7 40 40 H 0.96999 * 120.00188 * 0.02562 * 10 9 8 41 41 H 1.07997 * 120.04439 * 0.02562 * 14 13 11 42 42 H 1.07997 * 119.83927 * 179.72258 * 15 14 13 43 43 H 1.08006 * 119.79576 * 180.02562 * 16 15 14 44 44 H 1.07998 * 119.96858 * 180.02562 * 17 16 15 45 45 H 0.97001 * 120.00147 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7954 -0.3744 2.4632 6 8 2.3374 -1.1506 3.2215 7 6 2.9999 -2.0778 2.5234 8 6 3.8071 -3.2189 3.0870 9 6 5.2580 -2.7722 3.2772 10 7 6.0425 -3.8812 3.8256 11 6 7.3565 -3.7177 4.0768 12 8 7.8908 -2.6495 3.8487 13 6 8.1467 -4.8347 4.6285 14 6 7.5385 -6.0653 4.8867 15 6 8.2807 -7.1030 5.4080 16 6 9.6306 -6.9341 5.6720 17 6 10.2464 -5.7256 5.4166 18 6 9.5142 -4.6688 4.8926 19 8 10.1170 -3.4812 4.6416 20 6 11.4530 -3.4245 4.8131 21 1 11.9825 -4.2759 5.2145 22 6 12.1474 -2.2728 4.4740 23 7 11.5027 -1.2361 3.9847 24 14 13.9987 -2.1945 4.7109 25 1 14.6762 -2.6682 3.4773 26 1 14.4030 -0.7933 4.9909 27 1 14.3885 -3.0598 5.8531 28 7 2.8088 -1.8083 1.2545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 3.7740 -4.0625 2.3977 37 1 3.3902 -3.5187 4.0485 38 1 5.2910 -1.9285 3.9665 39 1 5.6749 -2.4723 2.3156 40 1 5.6164 -4.7335 4.0072 41 1 6.4869 -6.2021 4.6823 42 1 7.8082 -8.0526 5.6113 43 1 10.2042 -7.7532 6.0801 44 1 11.2989 -5.6019 5.6247 45 1 11.9885 -0.4308 3.7472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109228176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:54 Heat of formation + Delta-G solvation = 26.051613 kcal Electronic energy + Delta-G solvation = -28752.141783 eV Core-core repulsion = 24545.903069 eV Total energy + Delta-G solvation = -4206.238713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.77944 -39.64281 -38.21107 -37.12686 -36.37267 -35.82637 -34.43463 -32.62864 -32.34893 -30.88506 -29.45874 -28.93497 -27.58871 -25.48159 -24.83817 -24.77643 -23.14981 -22.46253 -21.32218 -20.46359 -19.86224 -18.30771 -18.04858 -17.83762 -17.47523 -16.20787 -15.84352 -15.49463 -15.28331 -14.96992 -14.67408 -14.39352 -14.23746 -14.09396 -13.89773 -13.80196 -13.67970 -13.22690 -12.84764 -12.65772 -12.62903 -12.55881 -12.35894 -12.03660 -11.92166 -11.72999 -11.62760 -11.48660 -11.37183 -11.30233 -11.14771 -11.10899 -10.91458 -10.80863 -10.47042 -10.07665 -9.60481 -8.92962 -8.89003 -8.68864 -8.29928 -7.33288 -6.45951 -4.05961 0.93051 1.68640 2.01724 2.29841 2.52503 3.11065 3.12348 3.16850 3.26876 3.64806 3.70476 3.85223 3.92361 4.48277 4.57871 4.61092 4.64309 4.66095 4.78755 4.94821 5.04794 5.15529 5.18580 5.22385 5.38086 5.41265 5.41893 5.46848 5.50514 5.62071 5.68023 5.68972 5.79174 5.82092 5.88587 5.92682 6.07002 6.09547 6.53686 6.65800 6.79100 6.88700 7.03716 7.21578 7.27356 7.67143 7.89188 7.97857 8.02693 8.93443 9.02742 9.65465 10.67772 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.002245 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.377820 B =12471.055455 C =14441.291363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 C -0.147 4.147 4 C 0.175 3.825 5 N -0.381 5.381 6 O 0.080 5.920 7 C 0.191 3.809 8 C -0.039 4.039 9 C 0.129 3.871 10 N -0.744 5.744 11 C 0.556 3.444 12 O -0.498 6.498 13 C -0.228 4.228 14 C -0.038 4.038 15 C -0.231 4.231 16 C -0.050 4.050 17 C -0.237 4.237 18 C 0.189 3.811 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.941 3.059 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.266 1.266 28 N -0.476 5.476 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.394 0.606 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.438 -4.291 -3.864 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 C -0.205 4.205 4 C -0.098 4.098 5 N -0.087 5.087 6 O 0.021 5.979 7 C -0.030 4.030 8 C -0.078 4.078 9 C 0.004 3.996 10 N -0.401 5.401 11 C 0.346 3.654 12 O -0.371 6.371 13 C -0.233 4.233 14 C -0.056 4.056 15 C -0.250 4.250 16 C -0.069 4.069 17 C -0.257 4.257 18 C 0.129 3.871 19 O -0.021 6.021 20 C -0.479 4.479 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.765 3.235 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.190 1.190 28 N -0.210 5.210 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.229 0.771 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.487 -2.305 -4.420 19.147 hybrid contribution 0.809 -0.653 0.370 1.103 sum -17.678 -2.958 -4.050 18.376 Atomic orbital electron populations 1.21847 0.92901 1.02493 1.02989 1.19577 0.96335 0.95537 0.91012 1.21862 1.01818 0.93825 1.02963 1.25846 0.96636 0.92695 0.94629 1.74584 1.17849 1.13444 1.02870 1.85314 1.47640 1.29665 1.35268 1.28441 0.94706 0.93951 0.85944 1.20405 0.92930 0.91235 1.03233 1.21044 0.87158 0.90778 1.00633 1.45761 1.09875 1.15040 1.69409 1.18225 0.80612 0.88401 0.78183 1.90968 1.69560 1.26751 1.49825 1.18783 0.92581 0.95198 1.16701 1.20752 0.97883 0.91616 0.95398 1.20463 0.94790 0.99079 1.10686 1.20904 0.94445 0.95998 0.95549 1.21162 1.01347 0.94005 1.09144 1.19277 0.90837 0.86164 0.90817 1.84171 1.22362 1.24881 1.70716 1.21500 0.79730 1.02058 1.44652 0.88827 1.25392 1.00521 0.94531 0.95894 1.70125 1.36365 1.03309 1.36531 0.85725 0.80450 0.78252 0.79067 1.19724 1.20132 1.19043 1.71931 1.16777 1.14271 1.18002 0.91870 0.91020 0.92339 0.87968 0.91835 0.92018 0.91011 0.86478 0.87196 0.90935 0.90744 0.77105 0.86971 0.87247 0.87183 0.85067 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.15 -1.22 9.18 37.16 0.34 -0.88 16 4 C 0.17 2.12 6.72 -156.37 -1.05 1.07 16 5 N -0.38 -4.93 12.16 30.90 0.38 -4.56 16 6 O 0.08 0.98 11.31 18.10 0.20 1.18 16 7 C 0.19 2.15 7.77 -13.06 -0.10 2.05 16 8 C -0.04 -0.33 5.96 -27.88 -0.17 -0.49 16 9 C 0.13 1.68 5.66 -4.04 -0.02 1.65 16 10 N -0.74 -10.71 5.51 -61.35 -0.34 -11.05 16 11 C 0.56 11.68 7.76 -12.47 -0.10 11.59 16 12 O -0.50 -13.36 15.17 -16.57 -0.25 -13.61 16 13 C -0.23 -4.75 5.89 -104.81 -0.62 -5.37 16 14 C -0.04 -0.60 9.54 -39.20 -0.37 -0.98 16 15 C -0.23 -3.60 10.03 -39.61 -0.40 -4.00 16 16 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 17 C -0.24 -4.98 9.16 -39.44 -0.36 -5.34 16 18 C 0.19 4.59 6.66 -38.60 -0.26 4.33 16 19 O -0.12 -3.60 7.84 -21.07 -0.17 -3.76 16 20 C -0.40 -11.32 9.49 30.90 0.29 -11.03 16 21 H 0.09 2.37 5.21 -52.48 -0.27 2.10 16 22 C 0.04 1.24 5.49 -17.52 -0.10 1.14 16 23 N -0.83 -25.03 13.67 55.48 0.76 -24.27 16 24 Si 0.94 20.42 29.55 -169.99 -5.02 15.39 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 N -0.48 -6.07 11.55 -9.87 -0.11 -6.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.39 4.11 6.50 -40.82 -0.27 3.85 16 41 H 0.11 1.30 6.40 -52.49 -0.34 0.96 16 42 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 44 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -36.52 387.69 -7.79 -44.30 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.80 Total: 5.27 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -3.27 Total: -8.57 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.68 Total: -46.06 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.21 Total: -16.19 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.52 -7.79 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109228176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.354 kcal (2) G-P(sol) polarization free energy of solvation -36.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds