Wall clock time and date at job start Wed Apr 1 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47043 * 2 1 4 4 C 1.50701 * 109.47386 * 120.00027 * 2 1 3 5 5 N 1.29951 * 126.28482 * 299.97616 * 4 2 1 6 6 O 1.21302 * 110.24595 * 179.72530 * 5 4 2 7 7 C 1.33642 * 109.81246 * 0.46670 * 6 5 4 8 8 C 1.50700 * 126.54954 * 179.79952 * 7 6 5 9 9 C 1.53003 * 109.47358 * 269.69136 * 8 7 6 10 10 N 1.46496 * 109.47208 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99950 * 179.97438 * 10 9 8 12 12 O 1.21592 * 120.00358 * 0.02562 * 11 10 9 13 13 C 1.47536 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.39673 * 120.19308 * 0.27711 * 13 11 10 15 15 C 1.37829 * 119.91662 * 180.30027 * 14 13 11 16 16 C 1.38573 * 120.32162 * 359.69830 * 15 14 13 17 17 C 1.38023 * 120.40656 * 0.02562 * 16 15 14 18 18 C 1.38834 * 120.06654 * 0.02562 * 17 16 15 19 19 O 1.35526 * 120.15695 * 179.97438 * 18 17 16 20 20 C 1.34813 * 117.00333 * 5.59555 * 19 18 17 21 21 H 1.08003 * 119.99735 * 354.93364 * 20 19 18 22 22 C 1.38696 * 119.99881 * 174.93689 * 20 19 18 23 23 N 1.31516 * 120.00523 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99750 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47536 * 89.99765 * 24 22 20 26 26 H 1.48501 * 109.46863 * 210.00121 * 24 22 20 27 27 H 1.48507 * 109.47000 * 329.99535 * 24 22 20 28 28 N 1.31127 * 106.89848 * 359.54260 * 7 6 5 29 29 H 1.09004 * 109.46779 * 299.99933 * 1 2 3 30 30 H 1.08995 * 109.47185 * 60.00426 * 1 2 3 31 31 H 1.09002 * 109.46817 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46779 * 240.00067 * 2 1 3 33 33 H 1.08997 * 109.47099 * 59.99731 * 3 2 1 34 34 H 1.09000 * 109.46613 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46500 * 300.00228 * 3 2 1 36 36 H 1.08998 * 109.47033 * 149.68719 * 8 7 6 37 37 H 1.09006 * 109.47196 * 29.69008 * 8 7 6 38 38 H 1.08997 * 109.46877 * 59.99706 * 9 8 7 39 39 H 1.09006 * 109.46863 * 300.00076 * 9 8 7 40 40 H 0.96999 * 120.00188 * 0.02562 * 10 9 8 41 41 H 1.07997 * 120.04439 * 0.02562 * 14 13 11 42 42 H 1.07997 * 119.83927 * 179.72258 * 15 14 13 43 43 H 1.08006 * 119.79576 * 180.02562 * 16 15 14 44 44 H 1.07998 * 119.96858 * 180.02562 * 17 16 15 45 45 H 0.97001 * 120.00147 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7954 -0.3744 2.4632 6 8 2.3374 -1.1506 3.2215 7 6 2.9999 -2.0778 2.5234 8 6 3.8071 -3.2189 3.0870 9 6 5.2580 -2.7722 3.2772 10 7 6.0425 -3.8812 3.8256 11 6 7.3565 -3.7177 4.0768 12 8 7.8908 -2.6495 3.8487 13 6 8.1467 -4.8347 4.6285 14 6 7.5385 -6.0653 4.8867 15 6 8.2807 -7.1030 5.4080 16 6 9.6306 -6.9341 5.6720 17 6 10.2464 -5.7256 5.4166 18 6 9.5142 -4.6688 4.8926 19 8 10.1170 -3.4812 4.6416 20 6 11.4530 -3.4245 4.8131 21 1 11.9825 -4.2759 5.2145 22 6 12.1474 -2.2728 4.4740 23 7 11.5027 -1.2361 3.9847 24 14 13.9987 -2.1945 4.7109 25 1 14.6762 -2.6682 3.4773 26 1 14.4030 -0.7933 4.9909 27 1 14.3885 -3.0598 5.8531 28 7 2.8088 -1.8083 1.2545 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 3.7740 -4.0625 2.3977 37 1 3.3902 -3.5187 4.0485 38 1 5.2910 -1.9285 3.9665 39 1 5.6749 -2.4723 2.3156 40 1 5.6164 -4.7335 4.0072 41 1 6.4869 -6.2021 4.6823 42 1 7.8082 -8.0526 5.6113 43 1 10.2042 -7.7532 6.0801 44 1 11.2989 -5.6019 5.6247 45 1 11.9885 -0.4308 3.7472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109228176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:53 Heat of formation + Delta-G solvation = -1.389553 kcal Electronic energy + Delta-G solvation = -28753.331721 eV Core-core repulsion = 24545.903069 eV Total energy + Delta-G solvation = -4207.428652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.71136 -41.26822 -39.85175 -38.00290 -37.94129 -36.98020 -35.50570 -34.31967 -33.70476 -32.24719 -30.62357 -30.50358 -28.21052 -27.39459 -25.99290 -25.69883 -24.36720 -23.63370 -22.87142 -21.66334 -21.00152 -19.83318 -19.37511 -19.12386 -18.60256 -17.82603 -17.15883 -16.63870 -16.32983 -16.15518 -16.12881 -15.75562 -15.66830 -15.56783 -15.26151 -14.98709 -14.67156 -14.48047 -14.29866 -14.20400 -13.70811 -13.53980 -13.47241 -13.25228 -12.99966 -12.72399 -12.70360 -12.65053 -12.54203 -12.45978 -12.32838 -12.30854 -12.15066 -12.11275 -11.90882 -11.42154 -11.00917 -10.82636 -10.63797 -10.15574 -9.75648 -9.00525 -8.44046 -6.14697 0.01192 0.15711 0.76822 1.09431 1.32363 1.44036 1.51271 1.63180 2.11356 2.16204 2.27376 2.59996 2.89382 2.98080 3.25317 3.50007 3.62533 3.76237 3.91444 3.99393 3.99919 4.02913 4.13081 4.18657 4.32474 4.45109 4.56159 4.62717 4.64245 4.64645 4.69928 4.77621 4.80011 4.87426 4.90855 5.00742 5.01903 5.09600 5.17559 5.17930 5.23937 5.44647 5.51648 5.64601 5.74111 5.97125 6.21256 6.70589 6.95757 7.06377 7.49314 7.82165 8.76560 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.002245 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.377820 B =12471.055455 C =14441.291363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.009 4.009 3 C -0.143 4.143 4 C 0.169 3.831 5 N -0.400 5.400 6 O 0.072 5.928 7 C 0.193 3.807 8 C -0.022 4.022 9 C 0.130 3.870 10 N -0.711 5.711 11 C 0.550 3.450 12 O -0.570 6.570 13 C -0.244 4.244 14 C -0.026 4.026 15 C -0.200 4.200 16 C -0.041 4.041 17 C -0.260 4.260 18 C 0.147 3.853 19 O -0.190 6.190 20 C -0.425 4.425 21 H 0.107 0.893 22 C -0.024 4.024 23 N -0.907 5.907 24 Si 1.021 2.979 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.247 1.247 28 N -0.499 5.499 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.419 0.581 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.152 0.848 44 H 0.121 0.879 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.758 -8.827 -3.260 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.104 4.104 5 N -0.109 5.109 6 O 0.015 5.985 7 C -0.028 4.028 8 C -0.061 4.061 9 C 0.005 3.995 10 N -0.368 5.368 11 C 0.340 3.660 12 O -0.449 6.449 13 C -0.249 4.249 14 C -0.044 4.044 15 C -0.219 4.219 16 C -0.059 4.059 17 C -0.279 4.279 18 C 0.092 3.908 19 O -0.093 6.093 20 C -0.501 4.501 21 H 0.124 0.876 22 C -0.223 4.223 23 N -0.543 5.543 24 Si 0.840 3.160 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.170 1.170 28 N -0.233 5.233 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.259 0.741 41 H 0.187 0.813 42 H 0.183 0.817 43 H 0.169 0.831 44 H 0.138 0.862 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.893 -6.970 -3.784 22.347 hybrid contribution 1.181 0.353 0.237 1.256 sum -19.711 -6.617 -3.546 21.092 Atomic orbital electron populations 1.21811 0.91338 1.02635 1.03721 1.19808 0.97596 0.95493 0.90007 1.21848 1.00725 0.93728 1.03799 1.26455 0.96077 0.92557 0.95329 1.74571 1.18894 1.14092 1.03336 1.85282 1.47938 1.29874 1.35379 1.28927 0.94249 0.93919 0.85709 1.20467 0.88977 0.90591 1.06041 1.21000 0.89782 0.90095 0.98641 1.45353 1.07757 1.16457 1.67200 1.18530 0.82391 0.87543 0.77560 1.90955 1.71499 1.29489 1.52941 1.19264 0.91677 0.97225 1.16686 1.21374 1.00585 0.89181 0.93276 1.21206 0.93817 1.00641 1.06191 1.21442 0.95773 0.95070 0.93617 1.21291 1.01190 0.95136 1.10285 1.20138 0.92739 0.86313 0.91628 1.84179 1.22673 1.27650 1.74761 1.22022 0.80438 1.02771 1.44902 0.87583 1.26748 1.06222 0.93825 0.95463 1.70322 1.38676 1.04484 1.40796 0.84574 0.73228 0.78500 0.79745 1.18726 1.19857 1.17016 1.71946 1.17435 1.14987 1.18885 0.92776 0.88603 0.92464 0.87244 0.92757 0.93666 0.88388 0.83710 0.83217 0.92756 0.93421 0.74126 0.81319 0.81674 0.83066 0.86169 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.18 71.98 0.66 -1.16 16 2 C -0.01 -0.16 3.39 -11.54 -0.04 -0.20 16 3 C -0.14 -2.35 9.18 71.98 0.66 -1.69 16 4 C 0.17 4.08 6.72 138.46 0.93 5.01 16 5 N -0.40 -10.44 12.16 -60.32 -0.73 -11.17 16 6 O 0.07 1.75 11.31 74.84 0.85 2.59 16 7 C 0.19 4.15 7.77 88.38 0.69 4.83 16 8 C -0.02 -0.31 5.96 29.85 0.18 -0.14 16 9 C 0.13 3.34 5.66 86.38 0.49 3.83 16 10 N -0.71 -19.28 5.51 -466.27 -2.57 -21.85 16 11 C 0.55 23.64 7.76 86.70 0.67 24.31 16 12 O -0.57 -33.11 15.17 16.89 0.26 -32.85 16 13 C -0.24 -10.03 5.89 -19.99 -0.12 -10.15 16 14 C -0.03 -0.70 9.54 22.52 0.21 -0.48 16 15 C -0.20 -4.86 10.03 22.25 0.22 -4.64 16 16 C -0.04 -1.21 10.03 22.30 0.22 -0.99 16 17 C -0.26 -10.85 9.16 22.36 0.20 -10.65 16 18 C 0.15 7.41 6.66 22.90 0.15 7.56 16 19 O -0.19 -12.02 7.84 0.78 0.01 -12.01 16 20 C -0.43 -25.70 9.49 67.93 0.64 -25.06 16 21 H 0.11 5.74 5.21 -2.91 -0.02 5.72 16 22 C -0.02 -1.41 5.49 84.85 0.47 -0.94 16 23 N -0.91 -59.70 13.67 21.62 0.30 -59.41 16 24 Si 1.02 44.43 29.55 68.60 2.03 46.45 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 28 N -0.50 -12.48 11.55 -303.20 -3.50 -15.98 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.15 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.42 6.78 6.50 -92.71 -0.60 6.18 16 41 H 0.17 2.57 6.40 -2.91 -0.02 2.55 16 42 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 43 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 45 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -94.99 387.69 3.32 -91.67 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.44 Total: 23.08 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 6.25 Total: -10.53 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -6.51 Total: -108.41 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: 1.11 Total: -42.27 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -94.99 3.32 -91.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109228176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.284 kcal (2) G-P(sol) polarization free energy of solvation -94.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds