Wall clock time and date at job start Wed Apr 1 2020 03:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46765 * 2 1 4 4 N 1.46504 * 109.47005 * 180.02562 * 3 2 1 5 5 C 1.35489 * 126.97940 * 265.00123 * 4 3 2 6 6 N 1.30524 * 107.30635 * 179.97438 * 5 4 3 7 7 N 1.28603 * 109.66860 * 359.73308 * 6 5 4 8 8 C 1.30514 * 109.67241 * 0.44667 * 7 6 5 9 9 C 1.50697 * 126.34222 * 179.82434 * 8 7 6 10 10 O 1.45206 * 109.47317 * 269.68836 * 9 8 7 11 11 C 1.34226 * 117.00074 * 180.02562 * 10 9 8 12 12 O 1.20825 * 120.00352 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99946 * 179.97438 * 11 10 9 14 14 C 1.50695 * 109.47436 * 179.97438 * 13 11 10 15 15 C 1.38300 * 119.93634 * 269.73208 * 14 13 11 16 16 C 1.38103 * 120.07235 * 179.72038 * 15 14 13 17 17 C 1.38881 * 119.92859 * 0.56979 * 16 15 14 18 18 O 1.35743 * 120.07033 * 179.67702 * 17 16 15 19 19 C 1.34829 * 117.00323 * 174.48588 * 18 17 16 20 20 H 1.08000 * 119.99772 * 5.06302 * 19 18 17 21 21 C 1.38655 * 120.00285 * 185.06067 * 19 18 17 22 22 N 1.31556 * 119.99986 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47268 * 60.00314 * 23 21 19 25 25 H 1.48504 * 109.46929 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47219 * 300.00047 * 23 21 19 27 27 C 1.38884 * 119.86119 * 359.70391 * 17 16 15 28 28 C 1.38100 * 119.93123 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46538 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46871 * 299.99258 * 1 2 3 31 31 H 1.08995 * 109.47309 * 59.99945 * 1 2 3 32 32 H 1.09000 * 109.46871 * 240.00742 * 2 1 3 33 33 H 1.09001 * 109.47218 * 120.00499 * 2 1 3 34 34 H 1.09003 * 109.47266 * 60.00501 * 3 2 1 35 35 H 1.09001 * 109.47660 * 300.00228 * 3 2 1 36 36 H 1.07997 * 126.35054 * 0.02562 * 5 4 3 37 37 H 1.09005 * 109.47398 * 149.68868 * 9 8 7 38 38 H 1.09003 * 109.47495 * 29.69150 * 9 8 7 39 39 H 1.08999 * 109.47119 * 60.00078 * 13 11 10 40 40 H 1.09004 * 109.47334 * 300.00224 * 13 11 10 41 41 H 1.08004 * 119.96372 * 359.97187 * 15 14 13 42 42 H 1.07998 * 120.03412 * 180.26808 * 16 15 14 43 43 H 0.97002 * 119.99992 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.03050 * 179.97438 * 27 17 16 45 45 H 1.08003 * 119.96708 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3205 1.5367 1.0773 6 7 5.5493 1.4980 0.6391 7 7 5.5487 1.3802 -0.6415 8 6 4.3195 1.3480 -1.0792 9 6 3.8866 1.2222 -2.5171 10 8 3.7479 2.5456 -3.0984 11 6 3.3651 2.6097 -4.3833 12 8 3.1534 1.5938 -5.0021 13 6 3.1994 3.9489 -5.0542 14 6 2.7671 3.7449 -6.4833 15 6 3.7170 3.6272 -7.4816 16 6 3.3241 3.4343 -8.7914 17 6 1.9732 3.3704 -9.1074 18 8 1.5837 3.1875 -10.3948 19 6 0.2645 3.0204 -10.6174 20 1 -0.4372 3.1171 -9.8021 21 6 -0.1914 2.7244 -11.8930 22 7 0.6634 2.6061 -12.8860 23 14 -2.0192 2.4936 -12.2014 24 1 -2.7431 3.7394 -11.8419 25 1 -2.2442 2.1878 -13.6371 26 1 -2.5235 1.3707 -11.3707 27 6 1.0216 3.4946 -8.1034 28 6 1.4210 3.6817 -6.7948 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 4.0111 1.6263 2.1081 37 1 2.9296 0.7025 -2.5644 38 1 4.6345 0.6574 -3.0738 39 1 4.1484 4.4848 -5.0351 40 1 2.4436 4.5294 -4.5250 41 1 4.7673 3.6821 -7.2360 42 1 4.0665 3.3382 -9.5699 43 1 0.3444 2.3994 -13.7785 44 1 -0.0296 3.4457 -8.3461 45 1 0.6815 3.7779 -6.0135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123900942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:55 Heat of formation + Delta-G solvation = -10.723142 kcal Electronic energy + Delta-G solvation = -28582.222222 eV Core-core repulsion = 24374.388835 eV Total energy + Delta-G solvation = -4207.833386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.57772 -40.56911 -39.02370 -37.13272 -36.79727 -36.22602 -33.20965 -32.61396 -32.18576 -31.42479 -30.21617 -28.08604 -27.34113 -26.51704 -25.17304 -23.07392 -22.58998 -22.04632 -21.86129 -21.12884 -20.24144 -18.04386 -17.92128 -17.75691 -17.05300 -16.75793 -16.51315 -16.25519 -15.89324 -15.40927 -14.77800 -14.66355 -14.40815 -14.28971 -14.14466 -13.76185 -13.60668 -13.42496 -13.06320 -13.02037 -12.76968 -12.69736 -12.56165 -12.20984 -11.95800 -11.81915 -11.59941 -11.57975 -11.31519 -11.07449 -10.94816 -10.83884 -10.71539 -10.68973 -10.61270 -10.49371 -10.46706 -9.72208 -9.37956 -8.86197 -8.21537 -7.24626 -6.48224 -4.06992 1.12988 1.88264 2.09040 2.19404 2.23271 2.39311 2.92545 3.10642 3.12644 3.14933 3.77040 3.88356 3.93818 4.03626 4.11895 4.37472 4.45953 4.49850 4.58678 4.71471 4.77833 4.92862 5.01310 5.04658 5.08976 5.16031 5.25096 5.25862 5.27228 5.34390 5.45761 5.57360 5.57618 5.64731 5.65913 5.79110 6.15953 6.21483 6.34752 6.36070 6.64689 6.85435 7.00087 7.17875 7.28900 7.39800 7.73695 7.77720 7.96427 8.29921 8.96929 9.66330 10.69448 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016429 B = 0.001964 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.907274 B =14251.265231 C =15480.531799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.099 3.901 4 N -0.463 5.463 5 C 0.158 3.842 6 N -0.295 5.295 7 N -0.267 5.267 8 C 0.173 3.827 9 C 0.155 3.845 10 O -0.360 6.360 11 C 0.458 3.542 12 O -0.485 6.485 13 C -0.047 4.047 14 C -0.186 4.186 15 C -0.055 4.055 16 C -0.191 4.191 17 C 0.160 3.840 18 O -0.174 6.174 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.234 4.234 28 C -0.053 4.053 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.221 0.779 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.128 0.872 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 -1.172 27.545 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C -0.023 4.023 4 N -0.154 5.154 5 C -0.129 4.129 6 N -0.135 5.135 7 N -0.110 5.110 8 C -0.094 4.094 9 C 0.078 3.922 10 O -0.277 6.277 11 C 0.300 3.700 12 O -0.370 6.370 13 C -0.085 4.085 14 C -0.187 4.187 15 C -0.073 4.073 16 C -0.211 4.211 17 C 0.105 3.895 18 O -0.077 6.077 19 C -0.469 4.469 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.253 4.253 28 C -0.071 4.071 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.238 0.762 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.145 0.855 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.798 -1.572 26.861 26.919 hybrid contribution -2.433 -0.309 0.069 2.453 sum -1.635 -1.881 26.930 27.045 Atomic orbital electron populations 1.21706 0.93557 1.03041 1.02605 1.21946 0.97556 0.94810 1.03713 1.22188 0.74765 0.99502 1.05885 1.46386 1.09221 1.52913 1.06927 1.26518 0.87140 1.04130 0.95109 1.74332 1.18063 1.18004 1.03131 1.74312 1.16747 1.16453 1.03478 1.24190 0.87518 1.06482 0.91233 1.20842 1.03026 0.83868 0.84416 1.86575 1.80180 1.32151 1.28819 1.24351 0.73136 0.93706 0.78813 1.90732 1.45006 1.37099 1.64113 1.20111 1.04529 0.90479 0.93368 1.18609 0.93790 1.14491 0.91825 1.20445 0.97750 0.97232 0.91917 1.20173 0.93522 1.10965 0.96396 1.19410 0.92917 0.91870 0.85271 1.83976 1.27118 1.76895 1.19750 1.21289 0.79817 1.49959 0.95813 0.89059 1.25308 1.00414 0.96343 0.94457 1.70029 1.34603 1.44079 1.00789 0.85772 0.80462 0.79165 0.77980 1.19479 1.20242 1.19481 1.21099 1.00128 1.11308 0.92776 1.20511 0.94219 0.96816 0.95544 0.91542 0.92101 0.91864 0.90913 0.90833 0.87773 0.88156 0.76242 0.89264 0.87384 0.87517 0.87786 0.87074 0.86345 0.91893 0.85466 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.91 37.16 0.37 -0.12 16 2 C -0.14 -0.56 6.26 -26.73 -0.17 -0.72 16 3 C 0.10 0.41 5.82 -4.04 -0.02 0.39 16 4 N -0.46 -3.52 2.75 -115.30 -0.32 -3.83 16 5 C 0.16 1.22 12.74 -89.95 -1.15 0.08 16 6 N -0.30 -3.61 12.21 29.69 0.36 -3.25 16 7 N -0.27 -3.62 12.21 32.79 0.40 -3.22 16 8 C 0.17 1.85 7.67 -155.00 -1.19 0.66 16 9 C 0.15 1.61 5.72 36.00 0.21 1.81 16 10 O -0.36 -4.23 10.20 -39.25 -0.40 -4.63 16 11 C 0.46 6.11 7.95 36.00 0.29 6.40 16 12 O -0.49 -8.17 15.78 -18.75 -0.30 -8.46 16 13 C -0.05 -0.57 5.94 -29.04 -0.17 -0.74 16 14 C -0.19 -3.06 4.38 -104.58 -0.46 -3.52 16 15 C -0.06 -0.98 9.69 -39.61 -0.38 -1.36 16 16 C -0.19 -4.05 9.99 -39.39 -0.39 -4.44 16 17 C 0.16 3.85 6.65 -39.10 -0.26 3.59 16 18 O -0.17 -4.96 9.76 0.07 0.00 -4.96 16 19 C -0.39 -10.89 9.49 30.89 0.29 -10.60 16 20 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 23 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.23 -5.01 9.17 -39.39 -0.36 -5.37 16 28 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.38 7.82 -51.93 -0.41 -0.03 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.10 0.44 8.02 -51.93 -0.42 0.02 16 36 H 0.22 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.09 0.77 7.61 -51.93 -0.40 0.38 16 38 H 0.11 1.16 8.13 -51.93 -0.42 0.74 16 39 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 41 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 45 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -36.01 393.86 -8.45 -44.46 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.99 Total: 1.32 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.88 Total: -14.29 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 1.21 Total: -34.63 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.70 Total: -18.05 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.01 -8.45 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123900942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.733 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds