Wall clock time and date at job start Wed Apr 1 2020 03:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46765 * 2 1 4 4 N 1.46504 * 109.47005 * 180.02562 * 3 2 1 5 5 C 1.35489 * 126.97940 * 265.00123 * 4 3 2 6 6 N 1.30524 * 107.30635 * 179.97438 * 5 4 3 7 7 N 1.28603 * 109.66860 * 359.73308 * 6 5 4 8 8 C 1.30514 * 109.67241 * 0.44667 * 7 6 5 9 9 C 1.50697 * 126.34222 * 179.82434 * 8 7 6 10 10 O 1.45206 * 109.47317 * 269.68836 * 9 8 7 11 11 C 1.34226 * 117.00074 * 180.02562 * 10 9 8 12 12 O 1.20825 * 120.00352 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99946 * 179.97438 * 11 10 9 14 14 C 1.50695 * 109.47436 * 179.97438 * 13 11 10 15 15 C 1.38300 * 119.93634 * 269.73208 * 14 13 11 16 16 C 1.38103 * 120.07235 * 179.72038 * 15 14 13 17 17 C 1.38881 * 119.92859 * 0.56979 * 16 15 14 18 18 O 1.35743 * 120.07033 * 179.67702 * 17 16 15 19 19 C 1.34829 * 117.00323 * 174.48588 * 18 17 16 20 20 H 1.08000 * 119.99772 * 5.06302 * 19 18 17 21 21 C 1.38655 * 120.00285 * 185.06067 * 19 18 17 22 22 N 1.31556 * 119.99986 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99817 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47268 * 60.00314 * 23 21 19 25 25 H 1.48504 * 109.46929 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47219 * 300.00047 * 23 21 19 27 27 C 1.38884 * 119.86119 * 359.70391 * 17 16 15 28 28 C 1.38100 * 119.93123 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46538 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46871 * 299.99258 * 1 2 3 31 31 H 1.08995 * 109.47309 * 59.99945 * 1 2 3 32 32 H 1.09000 * 109.46871 * 240.00742 * 2 1 3 33 33 H 1.09001 * 109.47218 * 120.00499 * 2 1 3 34 34 H 1.09003 * 109.47266 * 60.00501 * 3 2 1 35 35 H 1.09001 * 109.47660 * 300.00228 * 3 2 1 36 36 H 1.07997 * 126.35054 * 0.02562 * 5 4 3 37 37 H 1.09005 * 109.47398 * 149.68868 * 9 8 7 38 38 H 1.09003 * 109.47495 * 29.69150 * 9 8 7 39 39 H 1.08999 * 109.47119 * 60.00078 * 13 11 10 40 40 H 1.09004 * 109.47334 * 300.00224 * 13 11 10 41 41 H 1.08004 * 119.96372 * 359.97187 * 15 14 13 42 42 H 1.07998 * 120.03412 * 180.26808 * 16 15 14 43 43 H 0.97002 * 119.99992 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.03050 * 179.97438 * 27 17 16 45 45 H 1.08003 * 119.96708 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3205 1.5367 1.0773 6 7 5.5493 1.4980 0.6391 7 7 5.5487 1.3802 -0.6415 8 6 4.3195 1.3480 -1.0792 9 6 3.8866 1.2222 -2.5171 10 8 3.7479 2.5456 -3.0984 11 6 3.3651 2.6097 -4.3833 12 8 3.1534 1.5938 -5.0021 13 6 3.1994 3.9489 -5.0542 14 6 2.7671 3.7449 -6.4833 15 6 3.7170 3.6272 -7.4816 16 6 3.3241 3.4343 -8.7914 17 6 1.9732 3.3704 -9.1074 18 8 1.5837 3.1875 -10.3948 19 6 0.2645 3.0204 -10.6174 20 1 -0.4372 3.1171 -9.8021 21 6 -0.1914 2.7244 -11.8930 22 7 0.6634 2.6061 -12.8860 23 14 -2.0192 2.4936 -12.2014 24 1 -2.7431 3.7394 -11.8419 25 1 -2.2442 2.1878 -13.6371 26 1 -2.5235 1.3707 -11.3707 27 6 1.0216 3.4946 -8.1034 28 6 1.4210 3.6817 -6.7948 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 4.0111 1.6263 2.1081 37 1 2.9296 0.7025 -2.5644 38 1 4.6345 0.6574 -3.0738 39 1 4.1484 4.4848 -5.0351 40 1 2.4436 4.5294 -4.5250 41 1 4.7673 3.6821 -7.2360 42 1 4.0665 3.3382 -9.5699 43 1 0.3444 2.3994 -13.7785 44 1 -0.0296 3.4457 -8.3461 45 1 0.6815 3.7779 -6.0135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123900942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:55 Heat of formation + Delta-G solvation = -31.011583 kcal Electronic energy + Delta-G solvation = -28583.101994 eV Core-core repulsion = 24374.388835 eV Total energy + Delta-G solvation = -4208.713159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.27346 -41.65872 -40.68260 -38.55176 -37.58922 -37.22890 -34.42233 -33.68314 -33.26396 -32.62745 -31.79349 -29.09147 -28.06729 -27.60196 -26.92836 -23.65554 -23.62467 -23.32193 -22.87060 -21.79342 -21.58404 -19.85785 -18.87264 -18.84113 -18.44281 -17.72387 -17.35466 -17.02527 -16.49359 -16.38350 -16.22824 -15.98267 -15.90743 -15.52511 -15.14496 -15.04612 -14.64810 -14.52675 -14.38558 -14.10120 -13.74239 -13.60282 -13.43787 -13.21789 -12.96386 -12.89937 -12.57426 -12.50407 -12.46556 -12.35014 -12.28781 -12.14607 -12.00865 -11.87945 -11.63298 -11.40830 -11.18500 -11.17136 -10.79042 -10.50868 -9.77711 -8.95329 -8.47196 -6.15628 0.36135 0.60870 0.66766 1.18959 1.32207 1.34735 1.45570 1.51454 1.60028 2.02599 2.17903 2.82048 3.01988 3.18680 3.45357 3.50787 3.62886 3.73467 3.76139 3.83909 3.93474 4.02946 4.16860 4.18971 4.22536 4.24770 4.41834 4.44971 4.50076 4.57738 4.67714 4.74746 4.76809 4.78730 4.94848 5.04137 5.08007 5.13872 5.15136 5.24395 5.30605 5.34208 5.54712 5.70754 5.72967 5.81290 6.02379 6.20855 6.71387 6.97067 7.57128 7.77831 8.75778 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016429 B = 0.001964 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.907274 B =14251.265231 C =15480.531799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.095 3.905 4 N -0.457 5.457 5 C 0.180 3.820 6 N -0.345 5.345 7 N -0.312 5.312 8 C 0.164 3.836 9 C 0.156 3.844 10 O -0.354 6.354 11 C 0.468 3.532 12 O -0.527 6.527 13 C -0.047 4.047 14 C -0.159 4.159 15 C -0.054 4.054 16 C -0.208 4.208 17 C 0.116 3.884 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.103 0.897 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.020 2.980 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.258 1.258 27 C -0.244 4.244 28 C -0.051 4.051 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.269 0.731 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.112 0.888 43 H 0.273 0.727 44 H 0.121 0.879 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -0.166 32.086 32.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.025 4.025 4 N -0.147 5.147 5 C -0.107 4.107 6 N -0.184 5.184 7 N -0.155 5.155 8 C -0.104 4.104 9 C 0.080 3.920 10 O -0.270 6.270 11 C 0.312 3.688 12 O -0.415 6.415 13 C -0.083 4.083 14 C -0.160 4.160 15 C -0.072 4.072 16 C -0.227 4.227 17 C 0.066 3.934 18 O -0.139 6.139 19 C -0.490 4.490 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.839 3.161 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.183 1.183 27 C -0.263 4.263 28 C -0.069 4.069 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.284 0.716 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.725 -0.540 31.484 31.497 hybrid contribution -1.766 -0.584 -0.895 2.064 sum -2.492 -1.124 30.590 30.711 Atomic orbital electron populations 1.21688 0.92900 1.02948 1.03146 1.21898 0.97978 0.94655 1.03075 1.22500 0.72564 0.99846 1.07623 1.46577 1.10373 1.51810 1.05920 1.27390 0.85905 1.00760 0.96677 1.74232 1.20756 1.20526 1.02873 1.74206 1.18632 1.18092 1.04553 1.24106 0.87568 1.06867 0.91862 1.20893 1.03617 0.83141 0.84311 1.86544 1.79599 1.32906 1.27931 1.24395 0.71999 0.93410 0.78970 1.90750 1.47079 1.38576 1.65060 1.20243 1.07437 0.90460 0.90195 1.19153 0.92997 1.09623 0.94240 1.20907 1.00103 0.95615 0.90545 1.20435 0.92507 1.11597 0.98181 1.19984 0.94717 0.93790 0.84951 1.83942 1.27506 1.80187 1.22224 1.21801 0.80310 1.50256 0.96655 0.87968 1.26637 1.05959 0.95800 0.93843 1.70185 1.37260 1.47068 1.01374 0.84635 0.73636 0.79827 0.78035 1.17866 1.19709 1.18255 1.21245 0.99446 1.11633 0.94008 1.20968 0.95997 0.95218 0.94749 0.92023 0.90536 0.92319 0.92712 0.90401 0.84382 0.88123 0.71577 0.87596 0.88393 0.84388 0.83811 0.83522 0.87031 0.91843 0.86141 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 71.98 0.71 0.15 16 2 C -0.14 -0.70 6.26 30.60 0.19 -0.51 16 3 C 0.10 0.43 5.82 86.38 0.50 0.93 16 4 N -0.46 -5.57 2.75 -518.71 -1.42 -7.00 16 5 C 0.18 2.23 12.74 180.11 2.29 4.53 16 6 N -0.34 -7.97 12.21 -59.99 -0.73 -8.70 16 7 N -0.31 -8.23 12.21 -50.16 -0.61 -8.85 16 8 C 0.16 3.25 7.67 137.98 1.06 4.31 16 9 C 0.16 2.98 5.72 71.24 0.41 3.39 16 10 O -0.35 -7.17 10.20 -51.37 -0.52 -7.69 16 11 C 0.47 10.78 7.95 71.23 0.57 11.34 16 12 O -0.53 -16.52 15.78 21.97 0.35 -16.17 16 13 C -0.05 -0.87 5.94 29.10 0.17 -0.70 16 14 C -0.16 -4.68 4.38 -19.83 -0.09 -4.76 16 15 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16 16 C -0.21 -9.02 9.99 22.39 0.22 -8.80 16 17 C 0.12 5.85 6.65 22.58 0.15 6.00 16 18 O -0.23 -14.15 9.76 -22.66 -0.22 -14.37 16 19 C -0.41 -24.26 9.49 67.92 0.64 -23.61 16 20 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 21 C -0.03 -1.43 5.49 84.83 0.47 -0.96 16 22 N -0.92 -57.02 13.67 21.61 0.30 -56.72 16 23 Si 1.02 42.80 29.55 68.60 2.03 44.82 16 24 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 27 C -0.24 -10.52 9.17 22.39 0.21 -10.32 16 28 C -0.05 -1.69 9.69 22.25 0.22 -1.47 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.48 7.82 -2.39 -0.02 0.46 16 33 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.14 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.10 0.50 8.02 -2.39 -0.02 0.48 16 36 H 0.27 0.23 8.06 -2.91 -0.02 0.21 16 37 H 0.11 1.64 7.61 -2.38 -0.02 1.62 16 38 H 0.10 2.06 8.13 -2.39 -0.02 2.04 16 39 H 0.14 1.91 8.08 -2.39 -0.02 1.89 16 40 H 0.14 1.73 8.08 -2.38 -0.02 1.71 16 41 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 42 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 44 H 0.12 5.24 5.64 -2.91 -0.02 5.23 16 45 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -87.27 393.86 8.11 -79.16 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 1.01 Total: 17.58 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 7.94 Total: -22.06 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.47 Total: -81.26 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.40 Total: -38.24 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -87.27 8.11 -79.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123900942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.150 kcal (2) G-P(sol) polarization free energy of solvation -87.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds