Wall clock time and date at job start Wed Apr 1 2020 03:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46937 * 2 1 4 4 N 1.46497 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.35491 * 126.98368 * 270.15998 * 4 3 2 6 6 C 1.50699 * 126.34854 * 359.97438 * 5 4 3 7 7 N 1.30524 * 107.30495 * 180.22378 * 5 4 3 8 8 N 1.28592 * 109.67714 * 359.77539 * 7 5 4 9 9 C 1.30527 * 109.67179 * 359.97438 * 8 7 5 10 10 C 1.50699 * 126.34680 * 179.97438 * 9 8 7 11 11 O 1.45191 * 109.47322 * 90.02246 * 10 9 8 12 12 C 1.34757 * 117.00218 * 179.97438 * 11 10 9 13 13 O 1.21513 * 119.99823 * 0.02562 * 12 11 10 14 14 C 1.47396 * 120.00382 * 180.02562 * 12 11 10 15 15 C 1.39727 * 120.19979 * 359.96192 * 14 12 11 16 16 C 1.37807 * 119.91328 * 180.02562 * 15 14 12 17 17 C 1.38597 * 120.32919 * 359.97438 * 16 15 14 18 18 C 1.38017 * 120.41373 * 0.02562 * 17 16 15 19 19 C 1.38838 * 120.07918 * 359.97322 * 18 17 16 20 20 O 1.35498 * 120.16385 * 180.02562 * 19 18 17 21 21 C 1.34816 * 117.00238 * 354.40902 * 20 19 18 22 22 H 1.07995 * 119.99847 * 5.06099 * 21 20 19 23 23 C 1.38708 * 119.99941 * 185.06158 * 21 20 19 24 24 N 1.31514 * 119.99957 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99829 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47146 * 59.99769 * 25 23 21 27 27 H 1.48503 * 109.46957 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46973 * 299.99853 * 25 23 21 29 29 H 1.09002 * 109.47147 * 299.99581 * 1 2 3 30 30 H 1.08999 * 109.47472 * 59.99458 * 1 2 3 31 31 H 1.08995 * 109.46825 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46712 * 240.00342 * 2 1 3 33 33 H 1.08998 * 109.46954 * 120.00466 * 2 1 3 34 34 H 1.09002 * 109.46860 * 60.00243 * 3 2 1 35 35 H 1.08999 * 109.47482 * 300.00536 * 3 2 1 36 36 H 1.09001 * 109.47108 * 270.24906 * 6 5 4 37 37 H 1.08998 * 109.46932 * 30.24923 * 6 5 4 38 38 H 1.08997 * 109.47511 * 150.24873 * 6 5 4 39 39 H 1.09003 * 109.46921 * 330.01962 * 10 9 8 40 40 H 1.09004 * 109.46494 * 210.02675 * 10 9 8 41 41 H 1.08000 * 120.04958 * 0.04373 * 15 14 12 42 42 H 1.08001 * 119.83645 * 180.27327 * 16 15 14 43 43 H 1.08001 * 119.78884 * 180.02562 * 17 16 15 44 44 H 1.08003 * 119.95781 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99808 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3196 1.4397 1.0833 6 6 3.8868 1.4364 2.5267 7 7 5.5488 1.4458 0.6443 8 7 5.5493 1.4474 -0.6417 9 6 4.3204 1.4420 -1.0816 10 6 3.8886 1.4423 -2.5253 11 8 3.7563 0.0735 -2.9913 12 6 3.3738 -0.1028 -4.2713 13 8 3.1572 0.8610 -4.9789 14 6 3.2181 -1.4646 -4.8132 15 6 3.4668 -2.5759 -4.0035 16 6 3.3200 -3.8465 -4.5163 17 6 2.9258 -4.0288 -5.8325 18 6 2.6766 -2.9408 -6.6443 19 6 2.8192 -1.6531 -6.1452 20 8 2.5745 -0.5837 -6.9405 21 6 2.3085 -0.8341 -8.2383 22 1 2.2167 -1.8532 -8.5838 23 6 2.1527 0.2172 -9.1297 24 7 2.2640 1.4582 -8.7088 25 14 1.7849 -0.1299 -10.9279 26 1 0.5100 -0.8837 -11.0359 27 1 1.6656 1.1536 -11.6654 28 1 2.8872 -0.9353 -11.5122 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.7785 2.4633 2.8759 37 1 2.9319 0.9188 2.6185 38 1 4.6368 0.9248 3.1299 39 1 4.6347 1.9606 -3.1276 40 1 2.9294 1.9519 -2.6175 41 1 3.7735 -2.4394 -2.9770 42 1 3.5083 -4.7046 -3.8881 43 1 2.8131 -5.0285 -6.2253 44 1 2.3694 -3.0913 -7.6687 45 1 2.1547 2.1933 -9.3321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135469601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:52 Heat of formation + Delta-G solvation = -9.231433 kcal Electronic energy + Delta-G solvation = -30028.427548 eV Core-core repulsion = 25820.658847 eV Total energy + Delta-G solvation = -4207.768701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.30279 -39.94391 -38.75109 -36.58056 -36.48662 -35.75680 -33.04758 -32.82433 -32.46921 -30.83641 -29.23289 -29.00464 -27.00321 -26.47606 -25.50337 -23.49160 -22.50750 -21.74444 -21.36685 -20.72041 -20.29813 -18.13683 -17.75440 -17.19303 -16.83518 -16.25656 -15.97228 -15.91164 -15.45347 -14.80266 -14.57999 -14.45617 -14.21231 -13.98624 -13.81968 -13.79476 -13.48266 -13.24706 -13.02386 -12.77718 -12.70391 -12.60613 -12.51748 -12.10183 -11.87804 -11.80600 -11.50294 -11.41842 -11.21730 -11.19840 -10.96341 -10.86698 -10.54958 -10.51508 -10.29320 -10.26759 -9.88447 -9.44408 -9.13104 -8.97932 -8.39770 -7.44725 -6.56671 -4.16486 1.45725 1.51995 2.20560 2.24706 2.61206 3.05442 3.08047 3.10362 3.32819 3.34857 3.84407 4.08126 4.17729 4.23146 4.41233 4.47475 4.60458 4.72955 4.85679 4.94735 4.98331 5.03110 5.07508 5.09477 5.26288 5.31839 5.39762 5.48258 5.52554 5.58132 5.64411 5.70669 5.72225 5.84911 5.90093 5.97445 6.00654 6.06277 6.49356 6.57228 6.65274 6.79487 6.87297 7.02288 7.16027 7.22565 7.59045 7.81561 8.56471 8.62608 8.83313 9.51168 10.56797 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002827 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.656294 B = 9901.412283 C =10512.799888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.100 3.900 4 N -0.461 5.461 5 C 0.175 3.825 6 C -0.066 4.066 7 N -0.294 5.294 8 N -0.268 5.268 9 C 0.178 3.822 10 C 0.159 3.841 11 O -0.361 6.361 12 C 0.501 3.499 13 O -0.473 6.473 14 C -0.216 4.216 15 C -0.014 4.014 16 C -0.234 4.234 17 C -0.042 4.042 18 C -0.238 4.238 19 C 0.192 3.808 20 O -0.124 6.124 21 C -0.404 4.404 22 H 0.096 0.904 23 C 0.046 3.954 24 N -0.831 5.831 25 Si 0.943 3.057 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.267 1.267 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -2.786 17.828 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C -0.022 4.022 4 N -0.152 5.152 5 C -0.092 4.092 6 C -0.125 4.125 7 N -0.136 5.136 8 N -0.110 5.110 9 C -0.088 4.088 10 C 0.082 3.918 11 O -0.279 6.279 12 C 0.347 3.653 13 O -0.359 6.359 14 C -0.219 4.219 15 C -0.033 4.033 16 C -0.253 4.253 17 C -0.061 4.061 18 C -0.257 4.257 19 C 0.132 3.868 20 O -0.022 6.022 21 C -0.479 4.479 22 H 0.114 0.886 23 C -0.163 4.163 24 N -0.462 5.462 25 Si 0.766 3.234 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.192 1.192 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.140 0.860 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.152 0.848 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.870 -1.887 17.510 17.844 hybrid contribution -1.583 -0.132 -0.948 1.850 sum -4.453 -2.019 16.562 17.268 Atomic orbital electron populations 1.21689 0.93827 1.02927 1.02248 1.21928 0.97219 0.94741 1.04141 1.22140 0.74999 0.99818 1.05275 1.46172 1.08953 1.53822 1.06255 1.24838 0.87509 1.04383 0.92442 1.20223 1.02583 1.03948 0.85747 1.74294 1.17081 1.19103 1.03120 1.74290 1.16888 1.16785 1.03037 1.24190 0.87346 1.06141 0.91153 1.20707 1.02754 0.83406 0.84945 1.86568 1.81387 1.28864 1.31108 1.21124 0.74882 0.90680 0.78624 1.91021 1.45595 1.41550 1.57712 1.17930 1.20839 0.89519 0.93610 1.20943 0.92964 0.91383 0.97976 1.20540 1.12071 0.96235 0.96443 1.20977 0.93968 0.97716 0.93400 1.21114 1.11268 0.91525 1.01802 1.19195 0.90333 0.87850 0.89407 1.84130 1.70472 1.27681 1.19887 1.21495 1.50482 0.94855 0.81055 0.88641 1.25417 0.96172 0.94351 1.00315 1.70098 1.41663 0.98426 1.35992 0.85762 0.79384 0.78310 0.79900 1.19269 1.20065 1.19221 0.92457 0.91938 0.91586 0.89998 0.91155 0.88326 0.88232 0.89652 0.90403 0.88568 0.87621 0.89611 0.85988 0.86983 0.86897 0.84761 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.14 -1.17 6.26 -26.73 -0.17 -1.34 16 3 C 0.10 0.82 5.68 -4.04 -0.02 0.80 16 4 N -0.46 -5.44 2.75 -110.66 -0.30 -5.75 16 5 C 0.17 2.08 8.03 -154.99 -1.24 0.83 16 6 C -0.07 -0.43 10.05 36.01 0.36 -0.07 16 7 N -0.29 -4.68 12.21 32.80 0.40 -4.27 16 8 N -0.27 -4.70 12.21 32.80 0.40 -4.29 16 9 C 0.18 2.71 7.67 -154.97 -1.19 1.52 16 10 C 0.16 2.52 5.83 36.01 0.21 2.73 16 11 O -0.36 -6.61 9.45 -40.65 -0.38 -6.99 16 12 C 0.50 11.01 7.89 34.46 0.27 11.28 16 13 O -0.47 -12.21 14.96 -26.59 -0.40 -12.60 16 14 C -0.22 -4.70 5.89 -104.83 -0.62 -5.31 16 15 C -0.01 -0.26 9.61 -39.18 -0.38 -0.63 16 16 C -0.23 -3.85 10.02 -39.61 -0.40 -4.24 16 17 C -0.04 -0.72 10.03 -39.53 -0.40 -1.12 16 18 C -0.24 -4.92 9.16 -39.44 -0.36 -5.28 16 19 C 0.19 4.62 6.66 -38.58 -0.26 4.36 16 20 O -0.12 -3.51 7.84 -21.00 -0.16 -3.68 16 21 C -0.40 -10.98 9.49 30.91 0.29 -10.69 16 22 H 0.10 2.34 5.21 -52.49 -0.27 2.06 16 23 C 0.05 1.23 5.49 -17.51 -0.10 1.14 16 24 N -0.83 -24.13 13.67 55.48 0.76 -23.37 16 25 Si 0.94 19.78 29.55 -169.99 -5.02 14.76 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 28 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.52 7.82 -51.93 -0.41 0.11 16 35 H 0.10 0.81 7.19 -51.93 -0.37 0.43 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.35 7.87 -51.93 -0.41 -0.06 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.09 1.21 7.20 -51.93 -0.37 0.84 16 41 H 0.12 1.95 7.61 -52.49 -0.40 1.55 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.13 2.70 5.64 -52.48 -0.30 2.40 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -35.46 389.74 -8.35 -43.81 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.89 Total: 3.20 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.62 Total: -6.68 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 1.26 Total: -37.69 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.95 Total: -23.27 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.46 -8.35 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135469601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.583 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds