Wall clock time and date at job start Wed Apr 1 2020 03:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46937 * 2 1 4 4 N 1.46497 * 109.47044 * 179.97438 * 3 2 1 5 5 C 1.35491 * 126.98368 * 270.15998 * 4 3 2 6 6 C 1.50699 * 126.34854 * 359.97438 * 5 4 3 7 7 N 1.30524 * 107.30495 * 180.22378 * 5 4 3 8 8 N 1.28592 * 109.67714 * 359.77539 * 7 5 4 9 9 C 1.30527 * 109.67179 * 359.97438 * 8 7 5 10 10 C 1.50699 * 126.34680 * 179.97438 * 9 8 7 11 11 O 1.45191 * 109.47322 * 90.02246 * 10 9 8 12 12 C 1.34757 * 117.00218 * 179.97438 * 11 10 9 13 13 O 1.21513 * 119.99823 * 0.02562 * 12 11 10 14 14 C 1.47396 * 120.00382 * 180.02562 * 12 11 10 15 15 C 1.39727 * 120.19979 * 359.96192 * 14 12 11 16 16 C 1.37807 * 119.91328 * 180.02562 * 15 14 12 17 17 C 1.38597 * 120.32919 * 359.97438 * 16 15 14 18 18 C 1.38017 * 120.41373 * 0.02562 * 17 16 15 19 19 C 1.38838 * 120.07918 * 359.97322 * 18 17 16 20 20 O 1.35498 * 120.16385 * 180.02562 * 19 18 17 21 21 C 1.34816 * 117.00238 * 354.40902 * 20 19 18 22 22 H 1.07995 * 119.99847 * 5.06099 * 21 20 19 23 23 C 1.38708 * 119.99941 * 185.06158 * 21 20 19 24 24 N 1.31514 * 119.99957 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99829 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47146 * 59.99769 * 25 23 21 27 27 H 1.48503 * 109.46957 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46973 * 299.99853 * 25 23 21 29 29 H 1.09002 * 109.47147 * 299.99581 * 1 2 3 30 30 H 1.08999 * 109.47472 * 59.99458 * 1 2 3 31 31 H 1.08995 * 109.46825 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46712 * 240.00342 * 2 1 3 33 33 H 1.08998 * 109.46954 * 120.00466 * 2 1 3 34 34 H 1.09002 * 109.46860 * 60.00243 * 3 2 1 35 35 H 1.08999 * 109.47482 * 300.00536 * 3 2 1 36 36 H 1.09001 * 109.47108 * 270.24906 * 6 5 4 37 37 H 1.08998 * 109.46932 * 30.24923 * 6 5 4 38 38 H 1.08997 * 109.47511 * 150.24873 * 6 5 4 39 39 H 1.09003 * 109.46921 * 330.01962 * 10 9 8 40 40 H 1.09004 * 109.46494 * 210.02675 * 10 9 8 41 41 H 1.08000 * 120.04958 * 0.04373 * 15 14 12 42 42 H 1.08001 * 119.83645 * 180.27327 * 16 15 14 43 43 H 1.08001 * 119.78884 * 180.02562 * 17 16 15 44 44 H 1.08003 * 119.95781 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99808 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3196 1.4397 1.0833 6 6 3.8868 1.4364 2.5267 7 7 5.5488 1.4458 0.6443 8 7 5.5493 1.4474 -0.6417 9 6 4.3204 1.4420 -1.0816 10 6 3.8886 1.4423 -2.5253 11 8 3.7563 0.0735 -2.9913 12 6 3.3738 -0.1028 -4.2713 13 8 3.1572 0.8610 -4.9789 14 6 3.2181 -1.4646 -4.8132 15 6 3.4668 -2.5759 -4.0035 16 6 3.3200 -3.8465 -4.5163 17 6 2.9258 -4.0288 -5.8325 18 6 2.6766 -2.9408 -6.6443 19 6 2.8192 -1.6531 -6.1452 20 8 2.5745 -0.5837 -6.9405 21 6 2.3085 -0.8341 -8.2383 22 1 2.2167 -1.8532 -8.5838 23 6 2.1527 0.2172 -9.1297 24 7 2.2640 1.4582 -8.7088 25 14 1.7849 -0.1299 -10.9279 26 1 0.5100 -0.8837 -11.0359 27 1 1.6656 1.1536 -11.6654 28 1 2.8872 -0.9353 -11.5122 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.7785 2.4633 2.8759 37 1 2.9319 0.9188 2.6185 38 1 4.6368 0.9248 3.1299 39 1 4.6347 1.9606 -3.1276 40 1 2.9294 1.9519 -2.6175 41 1 3.7735 -2.4394 -2.9770 42 1 3.5083 -4.7046 -3.8881 43 1 2.8131 -5.0285 -6.2253 44 1 2.3694 -3.0913 -7.6687 45 1 2.1547 2.1933 -9.3321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135469601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:51 Heat of formation + Delta-G solvation = -29.712517 kcal Electronic energy + Delta-G solvation = -30029.315675 eV Core-core repulsion = 25820.658847 eV Total energy + Delta-G solvation = -4208.656827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.36318 -41.64288 -40.45312 -38.17166 -37.58864 -37.28687 -34.38032 -33.96554 -33.73935 -32.37234 -30.68246 -30.19809 -27.73833 -27.68373 -27.34384 -25.07324 -23.38700 -23.21785 -22.44920 -21.97511 -21.59955 -19.93438 -19.38926 -18.49069 -18.21285 -17.63524 -17.42416 -17.13196 -16.43809 -16.26654 -16.15516 -15.92845 -15.63359 -15.36066 -15.19212 -14.77967 -14.63795 -14.43761 -14.25261 -13.98920 -13.67102 -13.60983 -13.57697 -13.21341 -13.17747 -13.03893 -12.75822 -12.60657 -12.54232 -12.48519 -12.41285 -12.16447 -12.03876 -11.78527 -11.68314 -11.46057 -11.22433 -11.13681 -10.85046 -10.28723 -9.96513 -9.14838 -8.48961 -6.19896 -0.09755 0.35357 0.65908 1.24320 1.34018 1.46358 1.47418 1.51371 1.66118 1.96259 2.14027 2.79985 2.96296 3.12208 3.33265 3.34371 3.50679 3.57930 3.75290 3.83472 3.99170 4.04950 4.09618 4.16320 4.24480 4.30440 4.44251 4.47849 4.55715 4.61808 4.67300 4.73445 4.82505 4.87527 4.91683 5.02431 5.02826 5.08566 5.10645 5.15607 5.20893 5.33232 5.43450 5.55951 5.63455 5.77513 5.91902 6.08140 6.84330 6.91319 7.52662 7.69163 8.70610 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002827 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.656294 B = 9901.412283 C =10512.799888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.092 3.908 4 N -0.454 5.454 5 C 0.195 3.805 6 C -0.066 4.066 7 N -0.338 5.338 8 N -0.307 5.307 9 C 0.165 3.835 10 C 0.160 3.840 11 O -0.350 6.350 12 C 0.505 3.495 13 O -0.521 6.521 14 C -0.235 4.235 15 C -0.013 4.013 16 C -0.204 4.204 17 C -0.025 4.025 18 C -0.254 4.254 19 C 0.162 3.838 20 O -0.184 6.184 21 C -0.428 4.428 22 H 0.112 0.888 23 C -0.017 4.017 24 N -0.901 5.901 25 Si 1.021 2.979 26 H -0.252 1.252 27 H -0.274 1.274 28 H -0.255 1.255 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.134 0.866 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 -6.109 20.623 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.028 4.028 4 N -0.144 5.144 5 C -0.072 4.072 6 C -0.125 4.125 7 N -0.179 5.179 8 N -0.149 5.149 9 C -0.103 4.103 10 C 0.084 3.916 11 O -0.267 6.267 12 C 0.353 3.647 13 O -0.411 6.411 14 C -0.238 4.238 15 C -0.031 4.031 16 C -0.223 4.223 17 C -0.043 4.043 18 C -0.273 4.273 19 C 0.106 3.894 20 O -0.086 6.086 21 C -0.504 4.504 22 H 0.129 0.871 23 C -0.218 4.218 24 N -0.536 5.536 25 Si 0.840 3.160 26 H -0.175 1.175 27 H -0.199 1.199 28 H -0.179 1.179 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.118 0.882 41 H 0.163 0.837 42 H 0.180 0.820 43 H 0.179 0.821 44 H 0.151 0.849 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.966 -5.284 20.373 21.417 hybrid contribution -1.169 0.628 -1.353 1.895 sum -5.135 -4.655 19.020 20.244 Atomic orbital electron populations 1.21671 0.92562 1.03119 1.02967 1.21870 0.98177 0.94388 1.03032 1.22521 0.72766 1.00330 1.07226 1.46355 1.10147 1.52777 1.05166 1.25835 0.86391 1.00728 0.94284 1.20566 1.04117 1.05975 0.81833 1.74209 1.19601 1.21673 1.02457 1.74182 1.18420 1.17965 1.04380 1.23806 0.87688 1.07549 0.91234 1.20746 1.03135 0.82022 0.85724 1.86532 1.80508 1.30514 1.29155 1.21350 0.73689 0.90582 0.79099 1.91008 1.47769 1.43107 1.59174 1.18355 1.21181 0.90619 0.93621 1.21283 0.92205 0.91015 0.98608 1.21184 1.07766 0.96846 0.96456 1.21528 0.90964 0.98661 0.93108 1.21311 1.12086 0.91277 1.02619 1.19898 0.90658 0.88780 0.90073 1.84135 1.74093 1.29720 1.20655 1.22053 1.50965 0.95864 0.81495 0.87056 1.26753 0.95716 0.93828 1.05464 1.70281 1.45744 0.99766 1.37809 0.84626 0.79955 0.78324 0.73137 1.17545 1.19913 1.17902 0.89809 0.93153 0.91687 0.93466 0.89852 0.84137 0.88621 0.87347 0.87406 0.87851 0.89069 0.88237 0.83676 0.81982 0.82074 0.84853 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.14 -1.98 6.26 30.60 0.19 -1.79 16 3 C 0.09 1.30 5.68 86.38 0.49 1.79 16 4 N -0.45 -10.16 2.75 -504.01 -1.38 -11.54 16 5 C 0.20 4.26 8.03 137.98 1.11 5.37 16 6 C -0.07 -0.60 10.05 71.24 0.72 0.12 16 7 N -0.34 -10.67 12.21 -50.16 -0.61 -11.29 16 8 N -0.31 -11.07 12.21 -50.15 -0.61 -11.69 16 9 C 0.17 5.13 7.67 137.97 1.06 6.19 16 10 C 0.16 5.41 5.83 71.24 0.41 5.82 16 11 O -0.35 -13.36 9.45 -56.68 -0.54 -13.89 16 12 C 0.51 23.49 7.89 70.23 0.55 24.05 16 13 O -0.52 -29.23 14.96 26.79 0.40 -28.83 16 14 C -0.23 -10.43 5.89 -20.00 -0.12 -10.55 16 15 C -0.01 -0.44 9.61 22.53 0.22 -0.22 16 16 C -0.20 -5.67 10.02 22.25 0.22 -5.45 16 17 C -0.02 -0.74 10.03 22.30 0.22 -0.51 16 18 C -0.25 -10.31 9.16 22.36 0.20 -10.10 16 19 C 0.16 8.06 6.66 22.92 0.15 8.21 16 20 O -0.18 -11.21 7.84 1.06 0.01 -11.20 16 21 C -0.43 -24.71 9.49 67.93 0.64 -24.07 16 22 H 0.11 5.68 5.21 -2.91 -0.02 5.66 16 23 C -0.02 -0.99 5.49 84.85 0.47 -0.52 16 24 N -0.90 -56.53 13.67 21.62 0.30 -56.23 16 25 Si 1.02 42.23 29.55 68.60 2.03 44.26 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.14 0.85 7.82 -2.39 -0.02 0.83 16 35 H 0.10 1.46 7.19 -2.39 -0.02 1.44 16 36 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.38 7.87 -2.39 -0.02 0.36 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.10 3.03 7.20 -2.38 -0.02 3.02 16 41 H 0.15 4.21 7.61 -2.91 -0.02 4.18 16 42 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.13 5.35 5.64 -2.91 -0.02 5.33 16 45 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -88.42 389.74 7.87 -80.55 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.02 Total: 22.46 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 7.26 Total: -2.60 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -2.31 Total: -90.75 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -0.13 Total: -53.92 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -88.42 7.87 -80.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135469601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.839 kcal (2) G-P(sol) polarization free energy of solvation -88.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds