Wall clock time and date at job start Wed Apr 1 2020 04:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47235 * 2 1 4 4 N 1.46505 * 109.47078 * 173.42175 * 3 2 1 5 5 C 1.36876 * 119.99887 * 77.75016 * 4 3 2 6 6 H 1.08001 * 119.99891 * 180.02562 * 5 4 3 7 7 C 1.39046 * 119.99779 * 0.04552 * 5 4 3 8 8 N 1.31356 * 120.00058 * 8.86190 * 7 5 4 9 9 Si 1.86806 * 119.99604 * 188.86169 * 7 5 4 10 10 H 1.48499 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46979 * 120.00262 * 9 7 5 12 12 H 1.48504 * 109.46905 * 240.00143 * 9 7 5 13 13 C 1.34779 * 120.00077 * 257.74693 * 4 3 2 14 14 O 1.21594 * 120.00070 * 181.21628 * 13 4 3 15 15 C 1.47743 * 119.99933 * 1.21360 * 13 4 3 16 16 C 1.39678 * 120.12064 * 36.25858 * 15 13 4 17 17 C 1.37937 * 119.95653 * 180.02562 * 16 15 13 18 18 C 1.38308 * 120.21494 * 359.73981 * 17 16 15 19 19 C 1.38836 * 120.24777 * 0.52038 * 18 17 16 20 20 O 1.35909 * 119.97883 * 179.76608 * 19 18 17 21 21 C 1.42902 * 117.00222 * 359.71552 * 20 19 18 22 22 C 1.50704 * 109.46981 * 180.02562 * 21 20 19 23 23 N 1.29943 * 126.28702 * 270.02511 * 22 21 20 24 24 O 1.21298 * 110.25441 * 179.68552 * 23 22 21 25 25 C 1.33647 * 109.80825 * 0.46763 * 24 23 22 26 26 C 1.50693 * 126.55423 * 179.80056 * 25 24 23 27 27 N 1.31135 * 106.89682 * 359.54072 * 25 24 23 28 28 C 1.38472 * 120.03475 * 359.47864 * 19 18 17 29 29 H 1.09004 * 109.47606 * 59.99177 * 1 2 3 30 30 H 1.08999 * 109.47539 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47224 * 299.99992 * 1 2 3 32 32 H 1.09003 * 109.46983 * 240.00496 * 2 1 3 33 33 H 1.08998 * 109.47008 * 120.00487 * 2 1 3 34 34 H 1.09000 * 109.47141 * 53.42247 * 3 2 1 35 35 H 1.09003 * 109.47588 * 293.42260 * 3 2 1 36 36 H 0.97005 * 119.99948 * 179.97438 * 8 7 5 37 37 H 1.07997 * 120.02401 * 359.97438 * 16 15 13 38 38 H 1.08003 * 119.89464 * 180.02562 * 17 16 15 39 39 H 1.08003 * 119.88138 * 180.25393 * 18 17 16 40 40 H 1.08993 * 109.47173 * 60.00559 * 21 20 19 41 41 H 1.08999 * 109.46878 * 300.00516 * 21 20 19 42 42 H 1.09007 * 109.47359 * 269.69351 * 26 25 24 43 43 H 1.09003 * 109.46963 * 29.68705 * 26 25 24 44 44 H 1.08999 * 109.47549 * 149.68648 * 26 25 24 45 45 H 1.07996 * 120.10227 * 180.23269 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4964 1.4454 0.1582 5 6 4.3014 1.1513 -0.9090 6 1 5.3750 1.1531 -0.7923 7 6 3.7367 0.8505 -2.1436 8 7 2.4478 1.0168 -2.3343 9 14 4.8113 0.2100 -3.5309 10 1 6.2176 0.1135 -3.0636 11 1 4.3340 -1.1331 -3.9470 12 1 4.7367 1.1414 -4.6852 13 6 4.0437 1.7379 1.3547 14 8 5.2529 1.7620 1.4806 15 6 3.1744 2.0292 2.5132 16 6 1.9703 1.3405 2.6768 17 6 1.1610 1.6156 3.7594 18 6 1.5404 2.5680 4.6878 19 6 2.7328 3.2616 4.5309 20 8 3.0979 4.1998 5.4439 21 6 2.2041 4.4248 6.5359 22 6 2.7709 5.4912 7.4374 23 7 3.5565 5.3004 8.4547 24 8 3.8412 6.3609 8.9702 25 6 3.2379 7.3585 8.3167 26 6 3.3282 8.8275 8.6403 27 7 2.5568 6.8152 7.3366 28 6 3.5531 2.9937 3.4479 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5837 1.9891 0.8253 35 1 1.7760 1.9212 -0.9430 36 1 2.0539 0.8073 -3.1957 37 1 1.6726 0.5938 1.9556 38 1 0.2304 1.0822 3.8851 39 1 0.9046 2.7762 5.5356 40 1 2.0794 3.5005 7.0998 41 1 1.2369 4.7499 6.1526 42 1 2.5318 9.0963 9.3343 43 1 4.2949 9.0402 9.0968 44 1 3.2233 9.4085 7.7241 45 1 4.4827 3.5299 3.3269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158094412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:17 Heat of formation + Delta-G solvation = 60.233718 kcal Electronic energy + Delta-G solvation = -29506.005341 eV Core-core repulsion = 25301.248875 eV Total energy + Delta-G solvation = -4204.756466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.98002 -40.18809 -38.93685 -36.89704 -36.10127 -35.54443 -34.02070 -32.50278 -31.49962 -30.79223 -29.98132 -29.29762 -28.11469 -25.99213 -24.88784 -24.05067 -22.89641 -22.14174 -21.66548 -20.72686 -19.62969 -18.58283 -17.92197 -17.72339 -16.96121 -16.31760 -16.23179 -15.93685 -15.46672 -14.92544 -14.72575 -14.23527 -14.12770 -13.91708 -13.79386 -13.73292 -13.43106 -13.27178 -13.00846 -12.66948 -12.64587 -12.36875 -12.19656 -11.97104 -11.79111 -11.61423 -11.43701 -11.25964 -11.05862 -10.97564 -10.82985 -10.55495 -10.42475 -10.31849 -10.29767 -10.05692 -9.81944 -9.01284 -8.67402 -8.41656 -7.94300 -7.81270 -6.19181 -3.88329 0.75755 1.39922 1.66222 1.74408 2.44410 2.92817 3.10088 3.21021 3.28573 3.47920 3.67081 3.77056 4.04908 4.33945 4.47414 4.71373 4.75363 4.79796 4.81958 5.04478 5.06649 5.10603 5.13745 5.17356 5.40877 5.48476 5.60304 5.67681 5.75986 5.88478 5.90381 5.96214 6.19910 6.28433 6.41512 6.48061 6.57405 6.69238 6.78802 6.86394 6.92648 6.95009 7.32337 7.48900 7.51759 7.71511 7.78912 8.02421 8.50613 9.10450 9.36418 9.92411 10.55817 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.002213 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.483758 B =12647.968975 C =13444.433169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.086 3.914 4 N -0.424 5.424 5 C -0.287 4.287 6 H 0.107 0.893 7 C 0.025 3.975 8 N -0.870 5.870 9 Si 0.933 3.067 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.466 3.534 14 O -0.592 6.592 15 C -0.051 4.051 16 C -0.146 4.146 17 C -0.091 4.091 18 C -0.208 4.208 19 C 0.115 3.885 20 O -0.311 6.311 21 C 0.156 3.844 22 C 0.171 3.829 23 N -0.361 5.361 24 O 0.086 5.914 25 C 0.178 3.822 26 C -0.062 4.062 27 N -0.469 5.469 28 C -0.106 4.106 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.143 0.857 36 H 0.266 0.734 37 H 0.154 0.846 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.601 9.759 17.461 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.037 4.037 4 N -0.139 5.139 5 C -0.415 4.415 6 H 0.125 0.875 7 C -0.177 4.177 8 N -0.512 5.512 9 Si 0.760 3.240 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.255 3.745 14 O -0.479 6.479 15 C -0.055 4.055 16 C -0.165 4.165 17 C -0.109 4.109 18 C -0.227 4.227 19 C 0.071 3.929 20 O -0.224 6.224 21 C 0.079 3.921 22 C -0.102 4.102 23 N -0.067 5.067 24 O 0.023 5.977 25 C -0.043 4.043 26 C -0.120 4.120 27 N -0.203 5.203 28 C -0.126 4.126 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.160 0.840 36 H 0.078 0.922 37 H 0.171 0.829 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.968 9.019 17.145 20.587 hybrid contribution 0.097 -0.272 -0.454 0.539 sum -6.871 8.746 16.690 20.057 Atomic orbital electron populations 1.21658 0.96993 1.00162 1.01129 1.21915 0.94132 0.98688 1.01408 1.22683 0.79585 0.96921 1.04474 1.43784 1.06466 1.56152 1.07532 1.19949 0.92326 1.41862 0.87330 0.87476 1.25321 0.96323 0.97311 0.98725 1.69812 1.10301 1.47022 1.24034 0.85733 0.80030 0.78349 0.79936 1.19198 1.20540 1.20662 1.17779 0.87552 0.86161 0.82994 1.90616 1.14160 1.58964 1.84138 1.20054 0.94660 0.95246 0.95517 1.22254 0.93882 1.01639 0.98708 1.20814 0.99464 0.96993 0.93655 1.21167 0.97380 1.01673 1.02491 1.18675 0.94291 0.90073 0.89864 1.86058 1.46351 1.55951 1.34016 1.20508 0.92282 0.93688 0.85609 1.25218 0.97768 0.91629 0.95550 1.74680 1.15659 1.04411 1.11922 1.85317 1.54171 1.11134 1.47127 1.28907 0.90339 0.96638 0.88385 1.20430 1.05401 0.81122 1.05044 1.71904 1.22845 1.05186 1.20400 1.20368 1.00148 0.99595 0.92515 0.92394 0.94001 0.93978 0.89427 0.94468 0.93694 0.84040 0.92208 0.82882 0.85759 0.85967 0.89089 0.88589 0.87889 0.88223 0.87512 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.82 37.16 0.36 -1.91 16 2 C -0.12 -2.47 4.64 -26.74 -0.12 -2.59 16 3 C 0.09 1.91 4.16 -4.04 -0.02 1.89 16 4 N -0.42 -10.89 2.66 -115.92 -0.31 -11.20 16 5 C -0.29 -7.79 9.47 -15.00 -0.14 -7.93 16 6 H 0.11 3.09 7.17 -52.49 -0.38 2.72 16 7 C 0.02 0.61 4.95 -17.46 -0.09 0.53 16 8 N -0.87 -21.04 7.85 55.50 0.44 -20.60 16 9 Si 0.93 20.07 29.56 -169.99 -5.03 15.05 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.47 12.05 7.33 -12.37 -0.09 11.96 16 14 O -0.59 -17.31 16.43 5.28 0.09 -17.22 16 15 C -0.05 -1.10 5.26 -104.99 -0.55 -1.65 16 16 C -0.15 -2.67 7.38 -39.15 -0.29 -2.96 16 17 C -0.09 -1.36 10.02 -39.67 -0.40 -1.75 16 18 C -0.21 -2.99 9.04 -39.33 -0.36 -3.34 16 19 C 0.12 1.95 6.68 -39.27 -0.26 1.69 16 20 O -0.31 -5.01 10.12 -19.45 -0.20 -5.21 16 21 C 0.16 1.92 5.36 36.01 0.19 2.11 16 22 C 0.17 2.23 7.85 -156.37 -1.23 1.00 16 23 N -0.36 -4.71 12.16 30.90 0.38 -4.34 16 24 O 0.09 0.90 11.31 18.09 0.20 1.11 16 25 C 0.18 1.55 8.51 -13.06 -0.11 1.44 16 26 C -0.06 -0.19 10.51 36.00 0.38 0.19 16 27 N -0.47 -5.64 11.55 -9.87 -0.11 -5.75 16 28 C -0.11 -2.14 9.56 -39.01 -0.37 -2.51 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.60 7.95 -51.93 -0.41 0.19 16 32 H 0.09 1.98 6.20 -51.93 -0.32 1.66 16 33 H 0.04 0.74 6.41 -51.93 -0.33 0.40 16 34 H 0.05 0.93 4.83 -51.93 -0.25 0.68 16 35 H 0.14 3.42 5.37 -52.83 -0.28 3.13 16 36 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 37 H 0.15 2.80 2.81 -52.49 -0.15 2.65 16 38 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.12 1.32 6.28 -52.48 -0.33 1.00 16 40 H 0.09 0.95 7.64 -51.93 -0.40 0.55 16 41 H 0.10 0.99 7.67 -51.93 -0.40 0.60 16 42 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 43 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.13 2.81 8.02 -52.49 -0.42 2.39 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -32.91 370.90 -7.39 -40.30 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.34 Total: 6.11 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.09 Total: -3.84 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.39 Total: -41.89 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.09 Total: -21.33 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.91 -7.39 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158094412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.533 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds