Wall clock time and date at job start Wed Apr 1 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47235 * 2 1 4 4 N 1.46505 * 109.47078 * 173.42175 * 3 2 1 5 5 C 1.36876 * 119.99887 * 77.75016 * 4 3 2 6 6 H 1.08001 * 119.99891 * 180.02562 * 5 4 3 7 7 C 1.39046 * 119.99779 * 0.04552 * 5 4 3 8 8 N 1.31356 * 120.00058 * 8.86190 * 7 5 4 9 9 Si 1.86806 * 119.99604 * 188.86169 * 7 5 4 10 10 H 1.48499 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46979 * 120.00262 * 9 7 5 12 12 H 1.48504 * 109.46905 * 240.00143 * 9 7 5 13 13 C 1.34779 * 120.00077 * 257.74693 * 4 3 2 14 14 O 1.21594 * 120.00070 * 181.21628 * 13 4 3 15 15 C 1.47743 * 119.99933 * 1.21360 * 13 4 3 16 16 C 1.39678 * 120.12064 * 36.25858 * 15 13 4 17 17 C 1.37937 * 119.95653 * 180.02562 * 16 15 13 18 18 C 1.38308 * 120.21494 * 359.73981 * 17 16 15 19 19 C 1.38836 * 120.24777 * 0.52038 * 18 17 16 20 20 O 1.35909 * 119.97883 * 179.76608 * 19 18 17 21 21 C 1.42902 * 117.00222 * 359.71552 * 20 19 18 22 22 C 1.50704 * 109.46981 * 180.02562 * 21 20 19 23 23 N 1.29943 * 126.28702 * 270.02511 * 22 21 20 24 24 O 1.21298 * 110.25441 * 179.68552 * 23 22 21 25 25 C 1.33647 * 109.80825 * 0.46763 * 24 23 22 26 26 C 1.50693 * 126.55423 * 179.80056 * 25 24 23 27 27 N 1.31135 * 106.89682 * 359.54072 * 25 24 23 28 28 C 1.38472 * 120.03475 * 359.47864 * 19 18 17 29 29 H 1.09004 * 109.47606 * 59.99177 * 1 2 3 30 30 H 1.08999 * 109.47539 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47224 * 299.99992 * 1 2 3 32 32 H 1.09003 * 109.46983 * 240.00496 * 2 1 3 33 33 H 1.08998 * 109.47008 * 120.00487 * 2 1 3 34 34 H 1.09000 * 109.47141 * 53.42247 * 3 2 1 35 35 H 1.09003 * 109.47588 * 293.42260 * 3 2 1 36 36 H 0.97005 * 119.99948 * 179.97438 * 8 7 5 37 37 H 1.07997 * 120.02401 * 359.97438 * 16 15 13 38 38 H 1.08003 * 119.89464 * 180.02562 * 17 16 15 39 39 H 1.08003 * 119.88138 * 180.25393 * 18 17 16 40 40 H 1.08993 * 109.47173 * 60.00559 * 21 20 19 41 41 H 1.08999 * 109.46878 * 300.00516 * 21 20 19 42 42 H 1.09007 * 109.47359 * 269.69351 * 26 25 24 43 43 H 1.09003 * 109.46963 * 29.68705 * 26 25 24 44 44 H 1.08999 * 109.47549 * 149.68648 * 26 25 24 45 45 H 1.07996 * 120.10227 * 180.23269 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4964 1.4454 0.1582 5 6 4.3014 1.1513 -0.9090 6 1 5.3750 1.1531 -0.7923 7 6 3.7367 0.8505 -2.1436 8 7 2.4478 1.0168 -2.3343 9 14 4.8113 0.2100 -3.5309 10 1 6.2176 0.1135 -3.0636 11 1 4.3340 -1.1331 -3.9470 12 1 4.7367 1.1414 -4.6852 13 6 4.0437 1.7379 1.3547 14 8 5.2529 1.7620 1.4806 15 6 3.1744 2.0292 2.5132 16 6 1.9703 1.3405 2.6768 17 6 1.1610 1.6156 3.7594 18 6 1.5404 2.5680 4.6878 19 6 2.7328 3.2616 4.5309 20 8 3.0979 4.1998 5.4439 21 6 2.2041 4.4248 6.5359 22 6 2.7709 5.4912 7.4374 23 7 3.5565 5.3004 8.4547 24 8 3.8412 6.3609 8.9702 25 6 3.2379 7.3585 8.3167 26 6 3.3282 8.8275 8.6403 27 7 2.5568 6.8152 7.3366 28 6 3.5531 2.9937 3.4479 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5837 1.9891 0.8253 35 1 1.7760 1.9212 -0.9430 36 1 2.0539 0.8073 -3.1957 37 1 1.6726 0.5938 1.9556 38 1 0.2304 1.0822 3.8851 39 1 0.9046 2.7762 5.5356 40 1 2.0794 3.5005 7.0998 41 1 1.2369 4.7499 6.1526 42 1 2.5318 9.0963 9.3343 43 1 4.2949 9.0402 9.0968 44 1 3.2233 9.4085 7.7241 45 1 4.4827 3.5299 3.3269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158094412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:16 Heat of formation + Delta-G solvation = 37.820392 kcal Electronic energy + Delta-G solvation = -29506.977256 eV Core-core repulsion = 25301.248875 eV Total energy + Delta-G solvation = -4205.728381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.81317 -41.60585 -40.53845 -38.26281 -37.47338 -37.01052 -34.76373 -34.23262 -33.33894 -32.15486 -31.28008 -29.89939 -29.13523 -27.76935 -26.57879 -25.01054 -24.25452 -23.45023 -22.65527 -22.31248 -21.16785 -19.61297 -19.16639 -18.84455 -18.73997 -17.84856 -17.45715 -17.00914 -16.89965 -16.52525 -15.96281 -15.77636 -15.58628 -15.35009 -14.97034 -14.88611 -14.46635 -14.20206 -14.18078 -13.94063 -13.78101 -13.70300 -13.48272 -13.18926 -13.03544 -12.89734 -12.82978 -12.58537 -12.43299 -12.34540 -12.19193 -12.14825 -12.05613 -12.01069 -11.70999 -11.48570 -11.08376 -10.84534 -10.54684 -9.98107 -9.78197 -9.25957 -8.12187 -5.93430 -0.02740 -0.01851 0.38899 0.80569 1.34966 1.40721 1.53580 1.79484 1.94424 2.05573 2.23802 2.63950 2.75870 2.84962 3.08041 3.14367 3.67015 3.78325 3.85516 3.95636 4.08369 4.17161 4.25437 4.35126 4.39708 4.43841 4.54405 4.56202 4.58802 4.66074 4.68621 4.86273 4.89796 4.93410 5.09847 5.12708 5.17741 5.28553 5.30893 5.36915 5.47859 5.53627 5.61516 5.73471 5.85652 6.08098 6.26045 6.55384 6.99850 7.10828 7.40951 7.96566 8.59117 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.002213 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.483758 B =12647.968975 C =13444.433169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C 0.090 3.910 4 N -0.430 5.430 5 C -0.338 4.338 6 H 0.071 0.929 7 C 0.006 3.994 8 N -0.863 5.863 9 Si 0.992 3.008 10 H -0.283 1.283 11 H -0.264 1.264 12 H -0.268 1.268 13 C 0.445 3.555 14 O -0.649 6.649 15 C -0.077 4.077 16 C -0.153 4.153 17 C -0.071 4.071 18 C -0.184 4.184 19 C 0.121 3.879 20 O -0.332 6.332 21 C 0.149 3.851 22 C 0.154 3.846 23 N -0.386 5.386 24 O 0.085 5.915 25 C 0.193 3.807 26 C -0.062 4.062 27 N -0.502 5.502 28 C -0.134 4.134 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.275 0.725 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 10.067 19.185 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.153 4.153 3 C -0.032 4.032 4 N -0.144 5.144 5 C -0.466 4.466 6 H 0.089 0.911 7 C -0.196 4.196 8 N -0.503 5.503 9 Si 0.816 3.184 10 H -0.208 1.208 11 H -0.188 1.188 12 H -0.193 1.193 13 C 0.236 3.764 14 O -0.540 6.540 15 C -0.081 4.081 16 C -0.171 4.171 17 C -0.088 4.088 18 C -0.203 4.203 19 C 0.077 3.923 20 O -0.246 6.246 21 C 0.073 3.927 22 C -0.119 4.119 23 N -0.093 5.093 24 O 0.022 5.978 25 C -0.027 4.027 26 C -0.119 4.119 27 N -0.236 5.236 28 C -0.154 4.154 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.170 0.830 38 H 0.193 0.807 39 H 0.189 0.811 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.131 0.869 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.838 9.345 18.863 23.677 hybrid contribution 1.241 -0.210 -0.864 1.527 sum -9.596 9.135 17.999 22.350 Atomic orbital electron populations 1.21586 0.93384 1.01853 1.02137 1.21764 0.97113 0.96497 0.99919 1.22729 0.77755 0.98626 1.04096 1.44009 1.07794 1.55457 1.07158 1.19761 0.91382 1.46205 0.89275 0.91057 1.25957 0.97760 0.96228 0.99689 1.69916 1.10567 1.44957 1.24815 0.84897 0.77689 0.78577 0.77275 1.20823 1.18843 1.19336 1.18613 0.87668 0.85722 0.84366 1.90536 1.16750 1.61418 1.85323 1.19711 0.96009 0.97703 0.94658 1.22276 0.93063 1.01392 1.00391 1.21318 1.00033 0.96099 0.91400 1.21690 0.95993 0.99416 1.03173 1.18606 0.94533 0.90290 0.88919 1.86025 1.48103 1.55621 1.34855 1.20878 0.92338 0.94787 0.84657 1.25449 0.98210 0.92362 0.95851 1.74653 1.16321 1.05795 1.12578 1.85277 1.54235 1.11133 1.47134 1.29983 0.87975 0.98015 0.86693 1.20840 1.07762 0.77222 1.06114 1.71911 1.24637 1.05006 1.22077 1.20204 1.00259 1.00445 0.94524 0.92863 0.91966 0.91473 0.92429 0.94488 0.91875 0.85956 0.91306 0.82984 0.80737 0.81056 0.86917 0.86221 0.85174 0.85814 0.86921 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.82 71.98 0.71 -3.16 16 2 C -0.11 -4.54 4.64 30.59 0.14 -4.40 16 3 C 0.09 4.05 4.16 86.38 0.36 4.41 16 4 N -0.43 -23.50 2.66 -638.91 -1.70 -25.20 16 5 C -0.34 -19.69 9.47 84.10 0.80 -18.89 16 6 H 0.07 4.55 7.17 -2.91 -0.02 4.53 16 7 C 0.01 0.31 4.95 84.96 0.42 0.73 16 8 N -0.86 -42.07 7.85 21.68 0.17 -41.90 16 9 Si 0.99 42.05 29.56 68.60 2.03 44.08 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 13 C 0.45 24.92 7.33 86.76 0.64 25.55 16 14 O -0.65 -41.86 16.43 -4.01 -0.07 -41.92 16 15 C -0.08 -3.47 5.26 -20.10 -0.11 -3.58 16 16 C -0.15 -5.37 7.38 22.55 0.17 -5.20 16 17 C -0.07 -1.78 10.02 22.21 0.22 -1.56 16 18 C -0.18 -4.49 9.04 22.43 0.20 -4.29 16 19 C 0.12 3.99 6.68 22.47 0.15 4.14 16 20 O -0.33 -10.52 10.12 -92.53 -0.94 -11.46 16 21 C 0.15 3.32 5.36 71.24 0.38 3.70 16 22 C 0.15 3.84 7.85 138.46 1.09 4.92 16 23 N -0.39 -9.82 12.16 -60.32 -0.73 -10.55 16 24 O 0.09 1.70 11.31 74.80 0.85 2.55 16 25 C 0.19 3.06 8.51 88.38 0.75 3.81 16 26 C -0.06 -0.20 10.51 71.23 0.75 0.55 16 27 N -0.50 -11.47 11.55 -303.19 -3.50 -14.97 16 28 C -0.13 -5.69 9.56 22.64 0.22 -5.47 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.64 7.95 -2.38 -0.02 1.62 16 32 H 0.06 2.61 6.20 -2.39 -0.01 2.60 16 33 H 0.04 1.46 6.41 -2.39 -0.02 1.44 16 34 H 0.06 2.59 4.83 -2.39 -0.01 2.58 16 35 H 0.12 6.02 5.37 -4.17 -0.02 6.00 16 36 H 0.28 12.40 8.31 -92.70 -0.77 11.63 16 37 H 0.15 5.33 2.81 -2.91 -0.01 5.32 16 38 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 39 H 0.17 2.55 6.28 -2.91 -0.02 2.54 16 40 H 0.11 1.97 7.64 -2.39 -0.02 1.95 16 41 H 0.12 2.04 7.67 -2.39 -0.02 2.02 16 42 H 0.13 -0.18 8.14 -2.38 -0.02 -0.20 16 43 H 0.12 -0.14 8.14 -2.39 -0.02 -0.15 16 44 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.10 4.83 8.02 -2.91 -0.02 4.80 16 Total: -1.00 -81.15 370.90 4.03 -77.12 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 1.04 Total: 20.99 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.88 Total: 1.26 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -5.77 Total: -92.62 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.16 Total: -50.83 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -81.15 4.03 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158094412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.942 kcal (2) G-P(sol) polarization free energy of solvation -81.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds