Wall clock time and date at job start Wed Apr 1 2020 03:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47346 * 2 1 4 4 N 1.46506 * 109.46902 * 120.00100 * 2 1 3 5 5 C 1.33868 * 122.76175 * 299.97373 * 4 2 1 6 6 O 1.21228 * 125.39932 * 359.96076 * 5 4 2 7 7 C 1.51316 * 109.20527 * 179.97438 * 5 4 2 8 8 C 1.54230 * 103.55719 * 0.02562 * 7 5 4 9 9 H 1.09003 * 110.60706 * 241.32951 * 8 7 5 10 10 N 1.46498 * 110.60752 * 118.51578 * 8 7 5 11 11 C 1.34775 * 120.00071 * 154.99833 * 10 8 7 12 12 O 1.21586 * 119.99831 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00210 * 180.02562 * 11 10 8 14 14 C 1.39245 * 120.00064 * 184.98660 * 13 11 10 15 15 C 1.39478 * 119.83206 * 211.51208 * 14 13 11 16 16 C 1.36368 * 120.16791 * 179.97438 * 15 14 13 17 17 C 1.40874 * 119.82772 * 0.02959 * 16 15 14 18 18 C 1.41156 * 120.15971 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00184 * 330.40960 * 18 17 16 20 20 C 1.39896 * 119.99840 * 150.41137 * 18 17 16 21 21 N 1.30883 * 120.00023 * 333.84849 * 20 18 17 22 22 Si 1.86797 * 120.00005 * 153.84867 * 20 18 17 23 23 H 1.48504 * 109.47148 * 90.00264 * 22 20 18 24 24 H 1.48496 * 109.47429 * 329.99895 * 22 20 18 25 25 H 1.48506 * 109.47106 * 209.99639 * 22 20 18 26 26 C 1.40860 * 119.67279 * 0.26891 * 17 16 15 27 27 C 1.36380 * 119.82886 * 359.42182 * 26 17 16 28 28 C 1.33879 * 122.76106 * 119.95340 * 4 2 1 29 29 O 1.21229 * 125.39623 * 0.03809 * 28 4 2 30 30 H 1.08998 * 109.47026 * 299.99711 * 1 2 3 31 31 H 1.09001 * 109.47398 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47645 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47081 * 239.99738 * 2 1 3 34 34 H 1.08998 * 109.46823 * 60.00165 * 3 2 1 35 35 H 1.09003 * 109.47135 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47123 * 299.99852 * 3 2 1 37 37 H 1.09007 * 110.60619 * 241.48045 * 7 5 4 38 38 H 1.09000 * 110.74045 * 118.58194 * 7 5 4 39 39 H 0.96998 * 119.99827 * 335.00405 * 10 8 7 40 40 H 0.96997 * 120.00147 * 4.98256 * 13 11 10 41 41 H 1.07994 * 119.91283 * 0.02562 * 15 14 13 42 42 H 1.08002 * 120.08539 * 180.02562 * 16 15 14 43 43 H 0.96998 * 120.00035 * 354.20930 * 21 20 18 44 44 H 1.08003 * 120.08371 * 179.73012 * 26 17 16 45 45 H 1.07998 * 119.91843 * 180.29736 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7295 -0.2814 2.4377 6 8 1.0497 0.6821 2.7191 7 6 2.3863 -1.2118 3.4339 8 6 3.1130 -2.2402 2.5435 9 1 2.7256 -3.2434 2.7215 10 7 4.5580 -2.1977 2.7807 11 6 5.3149 -3.2836 2.5268 12 8 4.7984 -4.2984 2.1004 13 7 6.6442 -3.2447 2.7454 14 6 7.4409 -4.3288 2.3864 15 6 8.5851 -4.6244 3.1271 16 6 9.3700 -5.6848 2.7819 17 6 9.0228 -6.4820 1.6735 18 6 9.8305 -7.5810 1.3096 19 1 10.8910 -7.5626 1.5131 20 6 9.2573 -8.6939 0.6852 21 7 7.9941 -8.9755 0.8805 22 14 10.2947 -9.7782 -0.4272 23 1 10.9167 -10.8608 0.3769 24 1 11.3585 -8.9605 -1.0634 25 1 9.4335 -10.3755 -1.4793 26 6 7.8692 -6.1734 0.9266 27 6 7.0906 -5.1135 1.2878 28 6 2.7897 -1.7833 1.1378 29 8 3.1696 -2.3210 0.1198 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6354 -1.7026 4.0533 38 1 3.1000 -0.6706 4.0551 39 1 4.9701 -1.3880 3.1205 40 1 7.0460 -2.4615 3.1529 41 1 8.8497 -4.0125 3.9767 42 1 10.2555 -5.9128 3.3566 43 1 7.4768 -8.4640 1.5220 44 1 7.5992 -6.7775 0.0730 45 1 6.2031 -4.8785 0.7190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163896363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:59 Heat of formation + Delta-G solvation = -68.230541 kcal Electronic energy + Delta-G solvation = -29714.243857 eV Core-core repulsion = 25503.916763 eV Total energy + Delta-G solvation = -4210.327094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.43637 -40.03390 -38.84419 -37.67709 -36.36704 -36.07674 -34.61057 -33.65030 -32.85602 -30.36767 -29.61668 -28.55554 -27.66694 -26.19395 -24.66625 -23.38386 -22.53023 -21.62251 -21.18630 -20.33525 -19.47671 -18.28631 -17.87907 -17.53350 -17.42337 -16.92088 -16.31935 -15.48015 -15.12494 -14.83603 -14.61308 -14.54634 -14.47649 -14.41793 -14.02461 -13.97562 -13.61267 -13.38040 -13.30380 -12.90634 -12.56418 -12.51592 -12.36320 -12.21351 -12.02262 -11.80424 -11.73137 -11.37392 -11.13402 -11.02040 -10.91310 -10.37139 -10.35786 -10.08871 -10.07553 -9.95461 -9.45301 -9.24305 -9.15393 -8.74435 -7.72601 -7.22083 -7.00364 -4.32920 1.14679 2.06950 2.20934 2.63402 2.87939 2.92776 3.17969 3.24222 3.39974 3.48197 3.71449 3.82293 3.94990 4.07204 4.40859 4.44285 4.52089 4.62171 4.63310 4.69974 4.93819 5.07909 5.18156 5.19083 5.32987 5.37912 5.52344 5.58871 5.75545 5.76858 6.01224 6.11078 6.26395 6.50909 6.59020 6.66587 6.91744 6.97250 7.06684 7.13759 7.43963 7.47083 7.63357 7.79931 7.81600 7.88186 8.24200 8.31066 8.32691 8.74763 8.88799 8.97337 10.12326 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.002203 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.017092 B =12704.991789 C =13386.755315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 C -0.166 4.166 4 N -0.570 5.570 5 C 0.533 3.467 6 O -0.480 6.480 7 C -0.165 4.165 8 C 0.140 3.860 9 H 0.143 0.857 10 N -0.735 5.735 11 C 0.695 3.305 12 O -0.559 6.559 13 N -0.660 5.660 14 C 0.001 3.999 15 C -0.096 4.096 16 C -0.215 4.215 17 C 0.093 3.907 18 C -0.525 4.525 19 H 0.075 0.925 20 C 0.038 3.962 21 N -0.795 5.795 22 Si 1.066 2.934 23 H -0.278 1.278 24 H -0.276 1.276 25 H -0.274 1.274 26 C -0.203 4.203 27 C -0.069 4.069 28 C 0.508 3.492 29 O -0.449 6.449 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.399 0.601 40 H 0.392 0.608 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.300 0.700 44 H 0.104 0.896 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 18.523 3.682 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 C -0.224 4.224 4 N -0.316 5.316 5 C 0.321 3.679 6 O -0.352 6.352 7 C -0.206 4.206 8 C 0.029 3.971 9 H 0.160 0.840 10 N -0.394 5.394 11 C 0.396 3.604 12 O -0.434 6.434 13 N -0.306 5.306 14 C -0.091 4.091 15 C -0.117 4.117 16 C -0.235 4.235 17 C 0.089 3.911 18 C -0.553 4.553 19 H 0.093 0.907 20 C -0.184 4.184 21 N -0.417 5.417 22 Si 0.889 3.111 23 H -0.204 1.204 24 H -0.201 1.201 25 H -0.199 1.199 26 C -0.223 4.223 27 C -0.089 4.089 28 C 0.293 3.707 29 O -0.315 6.315 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.233 0.767 40 H 0.225 0.775 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.776 16.449 1.808 20.906 hybrid contribution 0.394 2.198 1.399 2.636 sum -12.382 18.647 3.207 22.613 Atomic orbital electron populations 1.22164 0.93464 1.02919 1.03863 1.21414 0.95574 0.93996 0.87136 1.22159 1.01596 0.94737 1.03865 1.47043 1.47245 1.28054 1.09221 1.20622 0.79251 0.84535 0.83470 1.90747 1.36149 1.26389 1.81898 1.22860 1.02468 0.96864 0.98381 1.21328 0.82642 1.02864 0.90273 0.83972 1.44863 1.05574 1.15890 1.73086 1.15949 0.81706 0.83171 0.79601 1.90978 1.71783 1.30414 1.50247 1.41994 1.04484 1.19365 1.64722 1.16871 0.96055 0.95170 1.01021 1.20048 0.95795 0.98079 0.97730 1.20539 1.02559 1.00265 1.00141 1.17722 0.91501 0.92385 0.89447 1.20466 0.97121 1.01563 1.36163 0.90662 1.26989 0.96739 0.97833 0.96853 1.70431 1.08420 1.36322 1.26550 0.83651 0.75493 0.75492 0.76432 1.20363 1.20089 1.19857 1.20806 0.99442 1.00089 1.01974 1.20458 0.98382 0.95469 0.94563 1.21573 0.76896 0.79065 0.93207 1.90831 1.49114 1.55828 1.35771 0.90767 0.90648 0.92091 0.87745 0.90774 0.92202 0.90639 0.84892 0.85497 0.76654 0.77517 0.89055 0.88506 0.88720 0.87767 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.17 37.16 0.34 -0.92 16 2 C 0.12 1.06 3.31 -67.93 -0.22 0.83 16 3 C -0.17 -1.27 9.17 37.16 0.34 -0.93 16 4 N -0.57 -5.44 2.48 -108.26 -0.27 -5.70 16 5 C 0.53 4.47 7.42 -11.09 -0.08 4.38 16 6 O -0.48 -5.00 14.82 5.60 0.08 -4.92 16 7 C -0.17 -0.93 6.79 -26.94 -0.18 -1.11 16 8 C 0.14 1.35 3.45 -68.14 -0.23 1.11 16 9 H 0.14 1.51 7.55 -51.93 -0.39 1.12 16 10 N -0.74 -7.92 5.12 -58.88 -0.30 -8.22 16 11 C 0.69 11.64 8.31 -86.92 -0.72 10.92 16 12 O -0.56 -12.15 13.50 5.29 0.07 -12.07 16 13 N -0.66 -10.99 5.32 -14.10 -0.08 -11.07 16 14 C 0.00 0.03 6.33 -83.57 -0.53 -0.50 16 15 C -0.10 -2.05 9.89 -39.79 -0.39 -2.44 16 16 C -0.22 -5.17 9.74 -39.26 -0.38 -5.55 16 17 C 0.09 2.47 5.18 -106.80 -0.55 1.92 16 18 C -0.53 -14.08 8.94 -37.85 -0.34 -14.41 16 19 H 0.08 1.95 7.97 -52.49 -0.42 1.53 16 20 C 0.04 0.99 4.88 -17.34 -0.08 0.90 16 21 N -0.79 -21.88 12.49 55.55 0.69 -21.18 16 22 Si 1.07 22.04 30.00 -169.99 -5.10 16.94 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.20 -5.42 8.00 -39.26 -0.31 -5.74 16 27 C -0.07 -1.71 8.58 -39.79 -0.34 -2.05 16 28 C 0.51 6.10 7.73 -11.09 -0.09 6.02 16 29 O -0.45 -7.51 17.23 5.60 0.10 -7.41 16 30 H 0.07 0.63 6.65 -51.93 -0.35 0.28 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 1.01 7.41 -51.93 -0.38 0.63 16 34 H 0.07 0.63 6.64 -51.93 -0.34 0.28 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.13 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.13 0.44 7.71 -51.93 -0.40 0.04 16 39 H 0.40 2.79 8.41 -40.82 -0.34 2.45 16 40 H 0.39 4.82 8.82 -40.82 -0.36 4.46 16 41 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 43 H 0.30 8.57 6.96 -40.82 -0.28 8.29 16 44 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 45 H 0.11 2.80 6.24 -52.49 -0.33 2.48 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -34.99 377.19 -8.62 -43.60 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.71 Total: 11.92 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.79 Total: -7.57 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.05 Total: -46.18 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.25 Total: -24.40 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.10 Total: 16.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.99 -8.62 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163896363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.626 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds