Wall clock time and date at job start Wed Apr 1 2020 03:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47346 * 2 1 4 4 N 1.46506 * 109.46902 * 120.00100 * 2 1 3 5 5 C 1.33868 * 122.76175 * 299.97373 * 4 2 1 6 6 O 1.21228 * 125.39932 * 359.96076 * 5 4 2 7 7 C 1.51316 * 109.20527 * 179.97438 * 5 4 2 8 8 C 1.54230 * 103.55719 * 0.02562 * 7 5 4 9 9 H 1.09003 * 110.60706 * 241.32951 * 8 7 5 10 10 N 1.46498 * 110.60752 * 118.51578 * 8 7 5 11 11 C 1.34775 * 120.00071 * 154.99833 * 10 8 7 12 12 O 1.21586 * 119.99831 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00210 * 180.02562 * 11 10 8 14 14 C 1.39245 * 120.00064 * 184.98660 * 13 11 10 15 15 C 1.39478 * 119.83206 * 211.51208 * 14 13 11 16 16 C 1.36368 * 120.16791 * 179.97438 * 15 14 13 17 17 C 1.40874 * 119.82772 * 0.02959 * 16 15 14 18 18 C 1.41156 * 120.15971 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00184 * 330.40960 * 18 17 16 20 20 C 1.39896 * 119.99840 * 150.41137 * 18 17 16 21 21 N 1.30883 * 120.00023 * 333.84849 * 20 18 17 22 22 Si 1.86797 * 120.00005 * 153.84867 * 20 18 17 23 23 H 1.48504 * 109.47148 * 90.00264 * 22 20 18 24 24 H 1.48496 * 109.47429 * 329.99895 * 22 20 18 25 25 H 1.48506 * 109.47106 * 209.99639 * 22 20 18 26 26 C 1.40860 * 119.67279 * 0.26891 * 17 16 15 27 27 C 1.36380 * 119.82886 * 359.42182 * 26 17 16 28 28 C 1.33879 * 122.76106 * 119.95340 * 4 2 1 29 29 O 1.21229 * 125.39623 * 0.03809 * 28 4 2 30 30 H 1.08998 * 109.47026 * 299.99711 * 1 2 3 31 31 H 1.09001 * 109.47398 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47645 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47081 * 239.99738 * 2 1 3 34 34 H 1.08998 * 109.46823 * 60.00165 * 3 2 1 35 35 H 1.09003 * 109.47135 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47123 * 299.99852 * 3 2 1 37 37 H 1.09007 * 110.60619 * 241.48045 * 7 5 4 38 38 H 1.09000 * 110.74045 * 118.58194 * 7 5 4 39 39 H 0.96998 * 119.99827 * 335.00405 * 10 8 7 40 40 H 0.96997 * 120.00147 * 4.98256 * 13 11 10 41 41 H 1.07994 * 119.91283 * 0.02562 * 15 14 13 42 42 H 1.08002 * 120.08539 * 180.02562 * 16 15 14 43 43 H 0.96998 * 120.00035 * 354.20930 * 21 20 18 44 44 H 1.08003 * 120.08371 * 179.73012 * 26 17 16 45 45 H 1.07998 * 119.91843 * 180.29736 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7295 -0.2814 2.4377 6 8 1.0497 0.6821 2.7191 7 6 2.3863 -1.2118 3.4339 8 6 3.1130 -2.2402 2.5435 9 1 2.7256 -3.2434 2.7215 10 7 4.5580 -2.1977 2.7807 11 6 5.3149 -3.2836 2.5268 12 8 4.7984 -4.2984 2.1004 13 7 6.6442 -3.2447 2.7454 14 6 7.4409 -4.3288 2.3864 15 6 8.5851 -4.6244 3.1271 16 6 9.3700 -5.6848 2.7819 17 6 9.0228 -6.4820 1.6735 18 6 9.8305 -7.5810 1.3096 19 1 10.8910 -7.5626 1.5131 20 6 9.2573 -8.6939 0.6852 21 7 7.9941 -8.9755 0.8805 22 14 10.2947 -9.7782 -0.4272 23 1 10.9167 -10.8608 0.3769 24 1 11.3585 -8.9605 -1.0634 25 1 9.4335 -10.3755 -1.4793 26 6 7.8692 -6.1734 0.9266 27 6 7.0906 -5.1135 1.2878 28 6 2.7897 -1.7833 1.1378 29 8 3.1696 -2.3210 0.1198 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6354 -1.7026 4.0533 38 1 3.1000 -0.6706 4.0551 39 1 4.9701 -1.3880 3.1205 40 1 7.0460 -2.4615 3.1529 41 1 8.8497 -4.0125 3.9767 42 1 10.2555 -5.9128 3.3566 43 1 7.4768 -8.4640 1.5220 44 1 7.5992 -6.7775 0.0730 45 1 6.2031 -4.8785 0.7190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163896363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:58 Heat of formation + Delta-G solvation = -93.039823 kcal Electronic energy + Delta-G solvation = -29715.319669 eV Core-core repulsion = 25503.916763 eV Total energy + Delta-G solvation = -4211.402905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.26659 -41.43699 -39.84252 -39.37486 -37.24375 -37.11016 -36.28541 -34.95328 -34.28276 -31.59906 -31.26237 -30.21092 -28.29694 -27.22759 -26.35829 -24.07526 -23.83752 -23.19767 -22.64351 -21.86938 -20.29545 -19.81318 -19.60676 -18.66325 -18.31360 -17.87163 -17.52676 -16.64650 -16.39517 -16.17140 -16.03488 -15.72991 -15.59568 -15.40710 -15.27172 -15.04355 -14.87439 -14.54260 -14.35490 -14.24063 -14.10127 -13.88041 -13.50898 -13.18877 -13.14265 -12.95461 -12.83277 -12.70483 -12.47821 -12.42829 -11.99097 -11.97631 -11.90786 -11.65021 -11.22386 -11.10347 -10.97485 -10.90841 -10.61194 -10.31396 -9.65774 -9.20383 -8.86514 -6.34679 0.28292 0.78049 0.97313 1.26908 1.38599 1.50224 1.61912 1.80162 1.82619 2.11614 2.35543 2.72734 2.94950 3.08915 3.13795 3.34015 3.56357 3.73425 3.88990 4.00352 4.03312 4.20215 4.29703 4.36350 4.49925 4.60203 4.62935 4.70272 4.74231 4.77592 4.96240 4.98519 5.05120 5.07783 5.13531 5.14965 5.28430 5.45842 5.55351 5.73282 5.78123 5.85017 5.95815 6.04645 6.18694 6.28430 6.40200 6.64495 6.79597 6.98585 7.03538 7.55868 8.07548 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.002203 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.017092 B =12704.991789 C =13386.755315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.109 3.891 3 C -0.157 4.157 4 N -0.568 5.568 5 C 0.534 3.466 6 O -0.494 6.494 7 C -0.142 4.142 8 C 0.137 3.863 9 H 0.134 0.866 10 N -0.708 5.708 11 C 0.694 3.306 12 O -0.612 6.612 13 N -0.651 5.651 14 C 0.029 3.971 15 C -0.088 4.088 16 C -0.219 4.219 17 C 0.062 3.938 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.001 4.001 21 N -0.825 5.825 22 Si 1.118 2.882 23 H -0.256 1.256 24 H -0.262 1.262 25 H -0.275 1.275 26 C -0.222 4.222 27 C -0.086 4.086 28 C 0.508 3.492 29 O -0.507 6.507 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.422 0.578 40 H 0.419 0.581 41 H 0.143 0.857 42 H 0.112 0.888 43 H 0.279 0.721 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.885 21.260 6.028 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 C -0.215 4.215 4 N -0.312 5.312 5 C 0.325 3.675 6 O -0.367 6.367 7 C -0.181 4.181 8 C 0.027 3.973 9 H 0.152 0.848 10 N -0.368 5.368 11 C 0.395 3.605 12 O -0.490 6.490 13 N -0.299 5.299 14 C -0.066 4.066 15 C -0.108 4.108 16 C -0.239 4.239 17 C 0.060 3.940 18 C -0.589 4.589 19 H 0.096 0.904 20 C -0.216 4.216 21 N -0.448 5.448 22 Si 0.934 3.066 23 H -0.181 1.181 24 H -0.186 1.186 25 H -0.200 1.200 26 C -0.242 4.242 27 C -0.107 4.107 28 C 0.295 3.705 29 O -0.378 6.378 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.183 0.817 38 H 0.180 0.820 39 H 0.262 0.738 40 H 0.257 0.743 41 H 0.161 0.839 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.663 19.317 4.230 23.482 hybrid contribution 0.177 1.643 0.752 1.815 sum -12.486 20.960 4.981 24.901 Atomic orbital electron populations 1.22111 0.92384 1.02684 1.04475 1.21571 0.96463 0.94518 0.86610 1.22097 1.01167 0.93765 1.04469 1.47117 1.46574 1.27333 1.10223 1.21048 0.78780 0.84446 0.83254 1.90759 1.36848 1.27182 1.81918 1.22932 1.03050 0.94979 0.97132 1.21492 0.81964 1.03947 0.89887 0.84809 1.44516 1.05785 1.15020 1.71476 1.16150 0.81783 0.83760 0.78799 1.90971 1.72785 1.33036 1.52210 1.41738 1.04375 1.19064 1.64760 1.16920 0.95967 0.94879 0.98789 1.20437 0.94440 0.97469 0.98483 1.20839 1.03336 1.00488 0.99211 1.18024 0.91797 0.93490 0.90738 1.20660 0.97309 1.02394 1.38506 0.90449 1.28458 0.96932 0.98927 0.97266 1.70563 1.09530 1.37034 1.27663 0.83028 0.74224 0.74474 0.74826 1.18086 1.18633 1.20043 1.20664 1.00676 1.00881 1.01953 1.20454 0.97922 0.96170 0.96140 1.21945 0.76237 0.78961 0.93379 1.90811 1.51554 1.57618 1.37813 0.91255 0.88882 0.92729 0.89215 0.91223 0.92740 0.88939 0.81733 0.82012 0.73829 0.74332 0.83903 0.87000 0.90988 0.90679 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.17 71.98 0.66 -1.61 16 2 C 0.11 1.88 3.31 44.99 0.15 2.02 16 3 C -0.16 -2.20 9.17 71.98 0.66 -1.54 16 4 N -0.57 -10.18 2.48 -734.25 -1.82 -12.00 16 5 C 0.53 7.49 7.42 87.99 0.65 8.14 16 6 O -0.49 -8.93 14.82 -2.87 -0.04 -8.97 16 7 C -0.14 -0.99 6.79 30.46 0.21 -0.79 16 8 C 0.14 2.36 3.45 44.86 0.15 2.52 16 9 H 0.13 2.68 7.55 -2.39 -0.02 2.67 16 10 N -0.71 -13.23 5.12 -458.47 -2.35 -15.58 16 11 C 0.69 22.16 8.31 179.06 1.49 23.64 16 12 O -0.61 -26.88 13.50 -3.99 -0.05 -26.93 16 13 N -0.65 -19.89 5.32 -316.78 -1.69 -21.58 16 14 C 0.03 1.20 6.33 38.56 0.24 1.44 16 15 C -0.09 -3.51 9.89 22.13 0.22 -3.29 16 16 C -0.22 -10.33 9.74 22.48 0.22 -10.11 16 17 C 0.06 3.43 5.18 -21.28 -0.11 3.32 16 18 C -0.56 -31.09 8.94 23.39 0.21 -30.88 16 19 H 0.08 4.10 7.97 -2.91 -0.02 4.08 16 20 C 0.00 -0.04 4.88 85.24 0.42 0.37 16 21 N -0.82 -48.02 12.49 21.82 0.27 -47.74 16 22 Si 1.12 45.39 30.00 68.60 2.06 47.45 16 23 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 26 C -0.22 -12.49 8.00 22.48 0.18 -12.31 16 27 C -0.09 -4.44 8.58 22.14 0.19 -4.25 16 28 C 0.51 12.01 7.73 87.99 0.68 12.69 16 29 O -0.51 -17.68 17.23 -2.87 -0.05 -17.73 16 30 H 0.07 1.07 6.65 -2.39 -0.02 1.06 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.81 7.41 -2.39 -0.02 1.79 16 34 H 0.07 1.06 6.64 -2.39 -0.02 1.04 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.17 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.16 0.14 7.71 -2.39 -0.02 0.12 16 39 H 0.42 4.00 8.41 -92.71 -0.78 3.22 16 40 H 0.42 8.37 8.82 -92.71 -0.82 7.55 16 41 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 43 H 0.28 17.11 6.96 -92.71 -0.65 16.47 16 44 H 0.07 4.55 6.86 -2.91 -0.02 4.53 16 45 H 0.09 5.07 6.24 -2.91 -0.02 5.05 16 Total: -1.00 -83.79 377.19 2.14 -81.65 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.41 Total: 32.04 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 6.22 Total: -10.62 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -5.58 Total: -96.89 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.15 Total: -53.64 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.06 Total: 47.45 kcal Total: -83.79 2.14 -81.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163896363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.389 kcal (2) G-P(sol) polarization free energy of solvation -83.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds