Wall clock time and date at job start Wed Apr 1 2020 03:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47436 * 2 1 4 4 N 1.46504 * 109.47223 * 239.99692 * 2 1 3 5 5 C 1.33878 * 122.75941 * 60.02672 * 4 2 1 6 6 O 1.21230 * 125.39562 * 359.97438 * 5 4 2 7 7 C 1.51312 * 109.20875 * 180.02562 * 5 4 2 8 8 C 1.54232 * 103.55125 * 359.97438 * 7 5 4 9 9 H 1.09006 * 110.60225 * 118.51996 * 8 7 5 10 10 N 1.46500 * 110.60827 * 241.32264 * 8 7 5 11 11 C 1.34771 * 120.00141 * 205.00177 * 10 8 7 12 12 O 1.21576 * 120.00017 * 0.02562 * 11 10 8 13 13 N 1.34779 * 119.99620 * 180.02562 * 11 10 8 14 14 C 1.39247 * 119.99631 * 175.71114 * 13 11 10 15 15 C 1.39481 * 119.83093 * 215.01637 * 14 13 11 16 16 C 1.36378 * 120.16892 * 179.75839 * 15 14 13 17 17 C 1.40867 * 119.82424 * 0.52011 * 16 15 14 18 18 C 1.41157 * 120.16415 * 179.71630 * 17 16 15 19 19 H 1.07996 * 119.99904 * 214.80577 * 18 17 16 20 20 C 1.39901 * 119.99803 * 34.79997 * 18 17 16 21 21 N 1.30877 * 119.99931 * 355.56380 * 20 18 17 22 22 Si 1.86803 * 119.99781 * 175.55973 * 20 18 17 23 23 H 1.48497 * 109.47031 * 60.00424 * 22 20 18 24 24 H 1.48502 * 109.46800 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46809 * 300.00100 * 22 20 18 26 26 C 1.40866 * 119.67589 * 359.73808 * 17 16 15 27 27 C 1.36381 * 119.82822 * 0.02562 * 26 17 16 28 28 C 1.33876 * 122.76337 * 239.73546 * 4 2 1 29 29 O 1.21224 * 125.39918 * 359.97438 * 28 4 2 30 30 H 1.09001 * 109.46845 * 59.99611 * 1 2 3 31 31 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47013 * 300.00660 * 1 2 3 33 33 H 1.09001 * 109.47359 * 119.99820 * 2 1 3 34 34 H 1.09003 * 109.47559 * 59.99674 * 3 2 1 35 35 H 1.08998 * 109.47452 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47421 * 300.00036 * 3 2 1 37 37 H 1.09001 * 110.60756 * 118.51185 * 7 5 4 38 38 H 1.08995 * 110.60706 * 241.32682 * 7 5 4 39 39 H 0.97009 * 119.99447 * 25.00741 * 10 8 7 40 40 H 0.97004 * 120.00260 * 355.71257 * 13 11 10 41 41 H 1.08009 * 119.91802 * 0.02686 * 15 14 13 42 42 H 1.08002 * 120.08624 * 180.25424 * 16 15 14 43 43 H 0.97001 * 119.99706 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.08991 * 179.97438 * 26 17 16 45 45 H 1.07996 * 119.91766 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 1.7295 -0.2814 -2.4377 6 8 1.0488 0.6815 -2.7191 7 6 2.3863 -1.2117 -3.4340 8 6 3.1131 -2.2401 -2.5435 9 1 2.7237 -3.2429 -2.7196 10 7 4.5577 -2.2002 -2.7833 11 6 5.3133 -3.2870 -2.5293 12 8 4.7958 -4.3006 -2.1016 13 7 6.6424 -3.2500 -2.7495 14 6 7.4360 -4.3408 -2.4038 15 6 8.7309 -4.1338 -1.9286 16 6 9.5123 -5.1968 -1.5833 17 6 9.0123 -6.5069 -1.7179 18 6 9.8171 -7.6126 -1.3683 19 1 9.7436 -8.5327 -1.9290 20 6 10.7098 -7.5166 -0.2954 21 7 10.8624 -6.3765 0.3289 22 14 11.6840 -9.0157 0.2460 23 1 12.5266 -9.4917 -0.8803 24 1 12.5518 -8.6534 1.3953 25 1 10.7476 -10.0937 0.6538 26 6 7.7054 -6.7081 -2.2036 27 6 6.9341 -5.6349 -2.5403 28 6 2.7948 -1.7797 -1.1377 29 8 3.1795 -2.3140 -0.1198 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6356 -1.7026 -4.0532 38 1 3.0983 -0.6680 -4.0549 39 1 4.9705 -1.3915 -3.1249 40 1 7.0463 -2.4636 -3.1489 41 1 9.1143 -3.1289 -1.8298 42 1 10.5134 -5.0349 -1.2117 43 1 11.4811 -6.3100 1.0730 44 1 7.3155 -7.7096 -2.3098 45 1 5.9321 -5.7876 -2.9132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163896474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:03 Heat of formation + Delta-G solvation = -60.399299 kcal Electronic energy + Delta-G solvation = -29581.007976 eV Core-core repulsion = 25371.020470 eV Total energy + Delta-G solvation = -4209.987506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.41453 -39.98845 -38.81764 -37.51760 -36.34556 -36.01648 -34.41235 -33.61857 -32.78282 -30.35756 -29.53282 -28.66580 -27.64962 -26.20751 -24.78538 -23.36429 -22.50143 -21.56890 -20.97742 -20.26601 -19.44772 -18.29175 -17.50970 -17.40872 -17.24546 -16.86693 -16.23358 -15.44485 -15.22842 -14.99486 -14.73947 -14.58242 -14.53077 -14.30022 -14.05977 -13.84360 -13.58942 -13.35210 -13.04502 -12.84393 -12.63630 -12.50279 -12.21600 -12.08804 -11.78678 -11.71612 -11.69263 -11.33577 -11.17125 -11.06617 -10.86900 -10.70535 -10.33902 -10.13557 -10.05661 -9.57990 -9.46629 -9.28051 -9.14542 -8.88988 -7.51616 -6.82957 -6.58449 -4.31029 1.17055 2.09803 2.23134 2.67135 2.91598 3.10833 3.11866 3.13846 3.17379 3.52059 3.71880 3.84266 3.97214 4.00928 4.43249 4.47740 4.53912 4.63891 4.71789 4.73656 4.95863 5.09112 5.19631 5.20490 5.34910 5.39670 5.60691 5.67299 5.77314 5.78451 6.14043 6.20274 6.43166 6.54042 6.70030 6.75878 6.99741 7.04928 7.14697 7.25960 7.37856 7.49647 7.67277 7.84433 7.96049 8.10893 8.32113 8.38932 8.66324 8.87934 8.96145 9.05121 10.32775 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.002091 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.831702 B =13387.661070 C =13816.767765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 C -0.166 4.166 4 N -0.571 5.571 5 C 0.532 3.468 6 O -0.480 6.480 7 C -0.165 4.165 8 C 0.140 3.860 9 H 0.143 0.857 10 N -0.736 5.736 11 C 0.697 3.303 12 O -0.561 6.561 13 N -0.661 5.661 14 C 0.020 3.980 15 C -0.121 4.121 16 C -0.141 4.141 17 C 0.099 3.901 18 C -0.461 4.461 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.813 5.813 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.204 4.204 27 C -0.085 4.085 28 C 0.507 3.493 29 O -0.448 6.448 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.399 0.601 40 H 0.392 0.608 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.278 0.722 44 H 0.096 0.904 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 15.366 -5.672 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 C -0.224 4.224 4 N -0.316 5.316 5 C 0.321 3.679 6 O -0.352 6.352 7 C -0.206 4.206 8 C 0.030 3.970 9 H 0.160 0.840 10 N -0.395 5.395 11 C 0.397 3.603 12 O -0.436 6.436 13 N -0.307 5.307 14 C -0.072 4.072 15 C -0.142 4.142 16 C -0.161 4.161 17 C 0.096 3.904 18 C -0.492 4.492 19 H 0.093 0.907 20 C -0.146 4.146 21 N -0.440 5.440 22 Si 0.740 3.260 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.224 4.224 27 C -0.105 4.105 28 C 0.292 3.708 29 O -0.314 6.314 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.234 0.766 40 H 0.226 0.774 41 H 0.108 0.892 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.814 14.726 -4.594 22.092 hybrid contribution 0.796 0.258 0.258 0.876 sum -15.018 14.983 -4.336 21.653 Atomic orbital electron populations 1.22161 0.93476 1.02889 1.03853 1.21412 0.95553 0.94003 0.87160 1.22161 1.01631 0.94740 1.03848 1.47048 1.47065 1.28263 1.09210 1.20633 0.79261 0.84528 0.83480 1.90747 1.36154 1.26430 1.81908 1.22860 1.02461 0.96874 0.98376 1.21322 0.82704 1.02772 0.90250 0.83989 1.44885 1.05606 1.15947 1.73027 1.15964 0.81999 0.83305 0.78995 1.90951 1.71740 1.30571 1.50317 1.42044 1.04848 1.19338 1.64470 1.17048 0.92135 0.85259 1.12771 1.20284 0.93814 0.98017 1.02064 1.21177 1.00483 0.91662 1.02785 1.17719 0.90508 0.93168 0.88972 1.19452 1.17869 0.99100 1.12814 0.90674 1.25874 0.95569 0.97160 0.95959 1.69755 1.30850 1.25075 1.18322 0.86254 0.79489 0.81651 0.78560 1.19086 1.20482 1.19117 1.20805 0.94775 0.96719 1.10148 1.20402 0.98797 0.91058 1.00215 1.21576 0.76920 0.79085 0.93230 1.90838 1.48927 1.55877 1.35765 0.90765 0.92106 0.90671 0.87748 0.90658 0.92177 0.90777 0.84919 0.85493 0.76629 0.77443 0.89171 0.85033 0.91133 0.88597 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.17 37.16 0.34 -0.92 16 2 C 0.12 1.07 3.31 -67.93 -0.22 0.85 16 3 C -0.17 -1.29 9.17 37.16 0.34 -0.95 16 4 N -0.57 -5.47 2.48 -108.26 -0.27 -5.73 16 5 C 0.53 4.45 7.42 -11.09 -0.08 4.37 16 6 O -0.48 -5.00 14.82 5.60 0.08 -4.92 16 7 C -0.17 -0.91 6.78 -26.94 -0.18 -1.09 16 8 C 0.14 1.34 3.45 -68.14 -0.24 1.10 16 9 H 0.14 1.45 7.55 -51.93 -0.39 1.06 16 10 N -0.74 -7.90 5.12 -58.88 -0.30 -8.20 16 11 C 0.70 11.60 8.39 -86.92 -0.73 10.87 16 12 O -0.56 -11.95 13.41 5.30 0.07 -11.88 16 13 N -0.66 -11.11 5.31 -14.10 -0.07 -11.18 16 14 C 0.02 0.45 6.31 -83.57 -0.53 -0.08 16 15 C -0.12 -2.75 9.90 -39.79 -0.39 -3.15 16 16 C -0.14 -3.63 8.62 -39.26 -0.34 -3.97 16 17 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 18 C -0.46 -12.38 9.02 -37.85 -0.34 -12.72 16 19 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 20 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 21 N -0.81 -21.38 10.60 55.55 0.59 -20.79 16 22 Si 0.92 19.20 29.56 -169.99 -5.03 14.17 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C -0.20 -5.19 9.74 -39.26 -0.38 -5.57 16 27 C -0.08 -2.02 8.61 -39.79 -0.34 -2.36 16 28 C 0.51 6.13 7.72 -11.09 -0.09 6.04 16 29 O -0.45 -7.60 17.23 5.61 0.10 -7.50 16 30 H 0.07 0.63 6.65 -51.93 -0.35 0.28 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 1.03 7.41 -51.93 -0.38 0.64 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.64 6.64 -51.93 -0.34 0.29 16 37 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.13 0.43 7.71 -51.93 -0.40 0.03 16 39 H 0.40 2.82 8.41 -40.82 -0.34 2.48 16 40 H 0.39 4.93 8.83 -40.82 -0.36 4.57 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.13 3.50 6.13 -52.49 -0.32 3.18 16 43 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 44 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.11 2.54 6.22 -52.49 -0.33 2.21 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -34.90 376.95 -8.75 -43.65 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.72 Total: 10.55 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.87 Total: -3.84 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.06 Total: -45.91 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.25 Total: -24.30 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.90 -8.75 -43.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163896474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.751 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds