Wall clock time and date at job start Wed Apr 1 2020 03:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47436 * 2 1 4 4 N 1.46504 * 109.47223 * 239.99692 * 2 1 3 5 5 C 1.33878 * 122.75941 * 60.02672 * 4 2 1 6 6 O 1.21230 * 125.39562 * 359.97438 * 5 4 2 7 7 C 1.51312 * 109.20875 * 180.02562 * 5 4 2 8 8 C 1.54232 * 103.55125 * 359.97438 * 7 5 4 9 9 H 1.09006 * 110.60225 * 118.51996 * 8 7 5 10 10 N 1.46500 * 110.60827 * 241.32264 * 8 7 5 11 11 C 1.34771 * 120.00141 * 205.00177 * 10 8 7 12 12 O 1.21576 * 120.00017 * 0.02562 * 11 10 8 13 13 N 1.34779 * 119.99620 * 180.02562 * 11 10 8 14 14 C 1.39247 * 119.99631 * 175.71114 * 13 11 10 15 15 C 1.39481 * 119.83093 * 215.01637 * 14 13 11 16 16 C 1.36378 * 120.16892 * 179.75839 * 15 14 13 17 17 C 1.40867 * 119.82424 * 0.52011 * 16 15 14 18 18 C 1.41157 * 120.16415 * 179.71630 * 17 16 15 19 19 H 1.07996 * 119.99904 * 214.80577 * 18 17 16 20 20 C 1.39901 * 119.99803 * 34.79997 * 18 17 16 21 21 N 1.30877 * 119.99931 * 355.56380 * 20 18 17 22 22 Si 1.86803 * 119.99781 * 175.55973 * 20 18 17 23 23 H 1.48497 * 109.47031 * 60.00424 * 22 20 18 24 24 H 1.48502 * 109.46800 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46809 * 300.00100 * 22 20 18 26 26 C 1.40866 * 119.67589 * 359.73808 * 17 16 15 27 27 C 1.36381 * 119.82822 * 0.02562 * 26 17 16 28 28 C 1.33876 * 122.76337 * 239.73546 * 4 2 1 29 29 O 1.21224 * 125.39918 * 359.97438 * 28 4 2 30 30 H 1.09001 * 109.46845 * 59.99611 * 1 2 3 31 31 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47013 * 300.00660 * 1 2 3 33 33 H 1.09001 * 109.47359 * 119.99820 * 2 1 3 34 34 H 1.09003 * 109.47559 * 59.99674 * 3 2 1 35 35 H 1.08998 * 109.47452 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47421 * 300.00036 * 3 2 1 37 37 H 1.09001 * 110.60756 * 118.51185 * 7 5 4 38 38 H 1.08995 * 110.60706 * 241.32682 * 7 5 4 39 39 H 0.97009 * 119.99447 * 25.00741 * 10 8 7 40 40 H 0.97004 * 120.00260 * 355.71257 * 13 11 10 41 41 H 1.08009 * 119.91802 * 0.02686 * 15 14 13 42 42 H 1.08002 * 120.08624 * 180.25424 * 16 15 14 43 43 H 0.97001 * 119.99706 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.08991 * 179.97438 * 26 17 16 45 45 H 1.07996 * 119.91766 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 1.7295 -0.2814 -2.4377 6 8 1.0488 0.6815 -2.7191 7 6 2.3863 -1.2117 -3.4340 8 6 3.1131 -2.2401 -2.5435 9 1 2.7237 -3.2429 -2.7196 10 7 4.5577 -2.2002 -2.7833 11 6 5.3133 -3.2870 -2.5293 12 8 4.7958 -4.3006 -2.1016 13 7 6.6424 -3.2500 -2.7495 14 6 7.4360 -4.3408 -2.4038 15 6 8.7309 -4.1338 -1.9286 16 6 9.5123 -5.1968 -1.5833 17 6 9.0123 -6.5069 -1.7179 18 6 9.8171 -7.6126 -1.3683 19 1 9.7436 -8.5327 -1.9290 20 6 10.7098 -7.5166 -0.2954 21 7 10.8624 -6.3765 0.3289 22 14 11.6840 -9.0157 0.2460 23 1 12.5266 -9.4917 -0.8803 24 1 12.5518 -8.6534 1.3953 25 1 10.7476 -10.0937 0.6538 26 6 7.7054 -6.7081 -2.2036 27 6 6.9341 -5.6349 -2.5403 28 6 2.7948 -1.7797 -1.1377 29 8 3.1795 -2.3140 -0.1198 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6356 -1.7026 -4.0532 38 1 3.0983 -0.6680 -4.0549 39 1 4.9705 -1.3915 -3.1249 40 1 7.0463 -2.4636 -3.1489 41 1 9.1143 -3.1289 -1.8298 42 1 10.5134 -5.0349 -1.2117 43 1 11.4811 -6.3100 1.0730 44 1 7.3155 -7.7096 -2.3098 45 1 5.9321 -5.7876 -2.9132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163896474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:02 Heat of formation + Delta-G solvation = -84.630861 kcal Electronic energy + Delta-G solvation = -29582.058735 eV Core-core repulsion = 25371.020470 eV Total energy + Delta-G solvation = -4211.038266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.23436 -41.36189 -39.79411 -39.19839 -37.21270 -37.02758 -36.07007 -34.88984 -34.24251 -31.51337 -31.23698 -30.30746 -28.28052 -27.26742 -26.40570 -24.04786 -23.77357 -23.02295 -22.50302 -21.82070 -20.25719 -19.62511 -19.15672 -18.58293 -18.28272 -17.81570 -17.48559 -16.97362 -16.49968 -16.15827 -15.84248 -15.68568 -15.57617 -15.35723 -15.24163 -14.98759 -14.68656 -14.52658 -14.30602 -14.08249 -13.96267 -13.58088 -13.45793 -13.19533 -13.12235 -12.89887 -12.82045 -12.74182 -12.46817 -12.45815 -12.40698 -11.95146 -11.82561 -11.38015 -11.24123 -11.11354 -11.00665 -10.88300 -10.64568 -10.25409 -9.42706 -8.67411 -8.47693 -6.29892 0.31932 0.87009 1.18110 1.28037 1.40094 1.42265 1.50921 1.53218 1.87496 2.17218 2.25929 2.83426 2.97882 3.12473 3.17870 3.38289 3.71767 3.75438 3.90990 4.02373 4.06683 4.22431 4.41851 4.50746 4.59872 4.61685 4.65227 4.72951 4.75919 4.95819 4.98087 5.09376 5.14764 5.15208 5.16723 5.21551 5.34327 5.46688 5.70351 5.75881 5.81554 6.04021 6.11332 6.20418 6.24979 6.43179 6.67445 6.71508 6.99728 7.03918 7.08214 7.60167 8.44821 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.002091 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.831702 B =13387.661070 C =13816.767765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.109 3.891 3 C -0.158 4.158 4 N -0.569 5.569 5 C 0.534 3.466 6 O -0.495 6.495 7 C -0.142 4.142 8 C 0.139 3.861 9 H 0.138 0.862 10 N -0.710 5.710 11 C 0.697 3.303 12 O -0.609 6.609 13 N -0.654 5.654 14 C 0.041 3.959 15 C -0.121 4.121 16 C -0.159 4.159 17 C 0.064 3.936 18 C -0.498 4.498 19 H 0.073 0.927 20 C 0.026 3.974 21 N -0.844 5.844 22 Si 0.987 3.013 23 H -0.257 1.257 24 H -0.269 1.269 25 H -0.266 1.266 26 C -0.220 4.220 27 C -0.095 4.095 28 C 0.507 3.493 29 O -0.507 6.507 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.422 0.578 40 H 0.417 0.583 41 H 0.124 0.876 42 H 0.118 0.882 43 H 0.284 0.716 44 H 0.095 0.905 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.145 17.333 -7.006 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 C -0.216 4.216 4 N -0.313 5.313 5 C 0.324 3.676 6 O -0.368 6.368 7 C -0.181 4.181 8 C 0.028 3.972 9 H 0.156 0.844 10 N -0.370 5.370 11 C 0.397 3.603 12 O -0.487 6.487 13 N -0.302 5.302 14 C -0.053 4.053 15 C -0.141 4.141 16 C -0.180 4.180 17 C 0.062 3.938 18 C -0.529 4.529 19 H 0.091 0.909 20 C -0.185 4.185 21 N -0.472 5.472 22 Si 0.809 3.191 23 H -0.181 1.181 24 H -0.194 1.194 25 H -0.191 1.191 26 C -0.240 4.240 27 C -0.116 4.116 28 C 0.294 3.706 29 O -0.378 6.378 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.261 0.739 40 H 0.254 0.746 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.663 16.812 -5.998 24.419 hybrid contribution 0.847 -0.159 0.628 1.066 sum -15.817 16.652 -5.371 23.586 Atomic orbital electron populations 1.22104 0.92332 1.02724 1.04438 1.21562 0.96491 0.94452 0.86662 1.22100 1.01139 0.93874 1.04444 1.47127 1.46409 1.27573 1.10195 1.21079 0.78779 0.84442 0.83277 1.90758 1.36885 1.27249 1.81937 1.22934 1.03042 0.95006 0.97120 1.21503 0.81922 1.04018 0.89712 0.84439 1.44551 1.05887 1.15103 1.71418 1.16119 0.81864 0.83918 0.78368 1.90934 1.72602 1.32960 1.52220 1.41792 1.04861 1.18885 1.64649 1.17054 0.92158 0.86115 1.09942 1.20531 0.93819 0.98834 1.00908 1.21160 1.00539 0.92278 1.03986 1.18037 0.91349 0.94064 0.90346 1.19689 1.19642 0.99317 1.14275 0.90917 1.26737 0.96158 1.00249 0.95403 1.69829 1.31600 1.26898 1.18839 0.85169 0.77940 0.77555 0.78475 1.18100 1.19370 1.19103 1.20939 0.94825 0.97466 1.10762 1.20540 0.98750 0.91731 1.00546 1.21976 0.76205 0.78941 0.93452 1.90814 1.51415 1.57707 1.37843 0.91268 0.92624 0.88946 0.89229 0.88983 0.92813 0.91228 0.81620 0.82143 0.73938 0.74586 0.85804 0.86416 0.90594 0.88640 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.17 71.98 0.66 -1.57 16 2 C 0.11 1.87 3.31 44.99 0.15 2.02 16 3 C -0.16 -2.25 9.17 71.98 0.66 -1.59 16 4 N -0.57 -10.10 2.48 -734.24 -1.82 -11.92 16 5 C 0.53 7.39 7.42 87.99 0.65 8.04 16 6 O -0.50 -8.92 14.82 -2.88 -0.04 -8.97 16 7 C -0.14 -0.94 6.78 30.46 0.21 -0.73 16 8 C 0.14 2.29 3.45 44.86 0.15 2.45 16 9 H 0.14 2.56 7.55 -2.38 -0.02 2.54 16 10 N -0.71 -13.13 5.12 -458.47 -2.35 -15.48 16 11 C 0.70 21.93 8.39 179.06 1.50 23.43 16 12 O -0.61 -25.71 13.41 -3.95 -0.05 -25.76 16 13 N -0.65 -20.45 5.31 -316.79 -1.68 -22.13 16 14 C 0.04 1.78 6.31 38.56 0.24 2.02 16 15 C -0.12 -5.39 9.90 22.14 0.22 -5.17 16 16 C -0.16 -8.40 8.62 22.48 0.19 -8.21 16 17 C 0.06 3.60 5.55 -21.28 -0.12 3.48 16 18 C -0.50 -27.79 9.02 23.39 0.21 -27.58 16 19 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 20 C 0.03 1.36 5.42 85.24 0.46 1.82 16 21 N -0.84 -45.47 10.60 21.82 0.23 -45.24 16 22 Si 0.99 39.91 29.56 68.60 2.03 41.93 16 23 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 25 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 26 C -0.22 -11.56 9.74 22.48 0.22 -11.35 16 27 C -0.10 -4.59 8.61 22.13 0.19 -4.40 16 28 C 0.51 11.84 7.72 87.99 0.68 12.52 16 29 O -0.51 -17.59 17.23 -2.86 -0.05 -17.64 16 30 H 0.07 1.06 6.65 -2.39 -0.02 1.04 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.81 7.41 -2.39 -0.02 1.79 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.07 6.64 -2.39 -0.02 1.06 16 37 H 0.17 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.16 0.12 7.71 -2.39 -0.02 0.10 16 39 H 0.42 4.12 8.41 -92.70 -0.78 3.34 16 40 H 0.42 8.98 8.83 -92.71 -0.82 8.16 16 41 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.12 6.47 6.13 -2.91 -0.02 6.45 16 43 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 44 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 45 H 0.11 5.28 6.22 -2.91 -0.02 5.26 16 Total: -1.00 -80.83 376.95 2.02 -78.81 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.54 Total: 31.19 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 6.29 Total: -4.80 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -5.62 Total: -94.77 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.14 Total: -52.36 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.93 kcal Total: -80.83 2.02 -78.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163896474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.821 kcal (2) G-P(sol) polarization free energy of solvation -80.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds