Wall clock time and date at job start Wed Apr 1 2020 03:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46746 * 2 1 4 4 H 1.09000 * 109.47312 * 55.00097 * 3 2 1 5 5 C 1.50701 * 109.47097 * 175.00196 * 3 2 1 6 6 H 1.08001 * 120.00213 * 119.99401 * 5 3 2 7 7 C 1.37880 * 119.99755 * 300.00020 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46734 * 90.00109 * 9 7 5 11 11 H 1.48499 * 109.47268 * 210.00057 * 9 7 5 12 12 H 1.48498 * 109.47211 * 330.00316 * 9 7 5 13 13 N 1.46506 * 109.47035 * 294.99923 * 3 2 1 14 14 C 1.34771 * 119.99635 * 85.00546 * 13 3 2 15 15 O 1.21284 * 120.00644 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99767 * 180.02562 * 14 13 3 17 17 C 1.53005 * 109.46830 * 179.97438 * 16 14 13 18 18 N 1.46506 * 109.46697 * 179.97438 * 17 16 14 19 19 C 1.38737 * 119.68241 * 89.99849 * 18 17 16 20 20 C 1.38649 * 121.59138 * 359.95292 * 19 18 17 21 21 C 1.38061 * 119.75667 * 180.02562 * 20 19 18 22 22 C 1.38651 * 120.64788 * 0.02768 * 21 20 19 23 23 C 1.37907 * 120.41813 * 359.97438 * 22 21 20 24 24 C 1.39294 * 119.50118 * 359.95251 * 23 22 21 25 25 C 1.47385 * 121.73324 * 180.02562 * 24 23 22 26 26 O 1.21600 * 120.85998 * 0.04217 * 25 24 23 27 27 N 1.35078 * 118.28325 * 180.02562 * 25 24 23 28 28 H 0.97004 * 119.36464 * 179.97438 * 27 25 24 29 29 C 1.34215 * 121.26433 * 359.74190 * 27 25 24 30 30 O 1.21568 * 118.59369 * 180.25814 * 29 27 25 31 31 H 1.08994 * 109.47010 * 299.99877 * 1 2 3 32 32 H 1.09000 * 109.47409 * 60.00095 * 1 2 3 33 33 H 1.09001 * 109.46571 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46791 * 240.00582 * 2 1 3 35 35 H 1.09000 * 109.47409 * 119.99905 * 2 1 3 36 36 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 37 37 H 0.97000 * 119.99818 * 265.00273 * 13 3 2 38 38 H 1.08999 * 109.46712 * 299.99201 * 16 14 13 39 39 H 1.08994 * 109.47068 * 59.99956 * 16 14 13 40 40 H 1.08999 * 109.46918 * 299.99194 * 17 16 14 41 41 H 1.08999 * 109.47653 * 60.00040 * 17 16 14 42 42 H 1.07997 * 120.12127 * 0.04609 * 20 19 18 43 43 H 1.08003 * 119.67424 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.78984 * 179.97438 * 22 21 20 45 45 H 1.08001 * 120.25134 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3376 2.1732 9 14 6.0050 0.8802 1.3810 10 1 6.4427 2.1132 2.0836 11 1 6.4392 -0.3108 2.1544 12 1 6.6131 0.8398 0.0269 13 7 1.6523 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3669 15 8 -0.3397 2.6320 -0.4344 16 6 0.0361 3.3376 -2.6549 17 6 -1.3832 3.8935 -2.5214 18 7 -1.7708 4.5485 -3.7732 19 6 -2.3992 3.8128 -4.7675 20 6 -2.6726 2.4628 -4.6094 21 6 -3.2993 1.7671 -5.6240 22 6 -3.6581 2.4051 -6.8015 23 6 -3.3943 3.7473 -6.9769 24 6 -2.7639 4.4610 -5.9603 25 6 -2.4590 5.8966 -6.0951 26 8 -2.7525 6.5043 -7.1066 27 7 -1.8453 6.5200 -5.0658 28 1 -1.6369 7.4647 -5.1379 29 6 -1.5225 5.8585 -3.9435 30 8 -0.9754 6.4686 -3.0455 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8294 -0.0608 2.9498 37 1 2.2718 2.1232 -1.9978 38 1 0.7274 4.1530 -2.8679 39 1 0.0671 2.6129 -3.4684 40 1 -2.0742 3.0778 -2.3086 41 1 -1.4146 4.6181 -1.7077 42 1 -2.3967 1.9573 -3.6958 43 1 -3.5112 0.7154 -5.4995 44 1 -4.1474 1.8474 -7.5864 45 1 -3.6754 4.2416 -7.8951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183821671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:54 Heat of formation + Delta-G solvation = -71.512299 kcal Electronic energy + Delta-G solvation = -30104.180131 eV Core-core repulsion = 25893.710729 eV Total energy + Delta-G solvation = -4210.469402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.51686 -39.63046 -39.31663 -38.92441 -36.35873 -35.42998 -35.01957 -32.49820 -32.02603 -31.52690 -30.78353 -29.80625 -27.12512 -25.27880 -24.97674 -23.88242 -22.98798 -21.80770 -20.29797 -19.94685 -19.83286 -19.38974 -18.11999 -17.47838 -16.79904 -16.47948 -16.22020 -15.79930 -15.56709 -15.34719 -15.27994 -14.97562 -14.74963 -14.50518 -14.29054 -14.15465 -13.77399 -13.40656 -12.97836 -12.74307 -12.59157 -12.42992 -12.04967 -11.78003 -11.57214 -11.31144 -11.19801 -11.16354 -11.00689 -10.89711 -10.87274 -10.70868 -10.65090 -10.36200 -10.22675 -9.68791 -9.60320 -9.14799 -9.08204 -8.54498 -8.51259 -7.89599 -6.16062 -4.25452 0.24172 0.73880 1.70320 1.74525 2.58223 2.64517 3.22336 3.27675 3.29629 3.31381 3.41489 3.77779 3.99426 4.16476 4.34572 4.43830 4.66420 4.77230 4.78717 4.81057 4.93226 5.15580 5.23292 5.30402 5.35566 5.46684 5.58861 5.63059 5.75246 5.79038 5.94829 5.97724 6.11462 6.27817 6.32718 6.38255 6.59034 6.90801 6.96656 7.04430 7.13366 7.30314 7.38384 7.56834 7.63121 7.67718 7.85501 8.13620 8.59078 8.72611 9.04444 9.41962 10.89255 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.002510 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.220534 B =11150.741091 C =11959.867801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.508 3.492 15 O -0.550 6.550 16 C -0.162 4.162 17 C 0.130 3.870 18 N -0.537 5.537 19 C 0.206 3.794 20 C -0.166 4.166 21 C -0.042 4.042 22 C -0.160 4.160 23 C -0.015 4.015 24 C -0.204 4.204 25 C 0.568 3.432 26 O -0.500 6.500 27 N -0.662 5.662 28 H 0.432 0.568 29 C 0.702 3.298 30 O -0.532 6.532 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.022 0.978 34 H 0.031 0.969 35 H 0.099 0.901 36 H 0.265 0.735 37 H 0.389 0.611 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.761 3.383 -17.997 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.291 3.709 15 O -0.429 6.429 16 C -0.203 4.203 17 C 0.009 3.991 18 N -0.259 5.259 19 C 0.107 3.893 20 C -0.186 4.186 21 C -0.061 4.061 22 C -0.179 4.179 23 C -0.034 4.034 24 C -0.210 4.210 25 C 0.360 3.640 26 O -0.373 6.373 27 N -0.330 5.330 28 H 0.274 0.726 29 C 0.403 3.597 30 O -0.404 6.404 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.221 0.779 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.099 3.820 -17.042 22.445 hybrid contribution 1.512 0.373 -0.312 1.588 sum -12.587 4.192 -17.354 21.844 Atomic orbital electron populations 1.21834 0.98362 0.98006 1.01150 1.21934 0.92607 0.99790 1.02315 1.18806 0.94243 0.89174 0.80945 0.93214 1.21231 0.90733 1.39073 1.06335 0.92118 1.24878 0.98613 0.94767 0.95375 1.69887 1.35149 1.37575 1.09317 0.86463 0.84851 0.77676 0.78206 1.20552 1.21056 1.19859 1.46498 1.14479 1.55628 1.18641 1.19961 0.83107 0.79373 0.88409 1.90693 1.51487 1.60191 1.40544 1.22028 0.97650 1.01996 0.98652 1.21642 0.95845 0.98984 0.82633 1.44915 1.55954 1.07147 1.17913 1.18114 0.91864 0.92266 0.87082 1.20882 1.04376 0.91466 1.01897 1.21341 0.92651 1.00302 0.91840 1.21165 1.03562 0.94407 0.98738 1.21009 0.91888 0.93634 0.96874 1.19410 1.11852 0.93101 0.96618 1.18430 0.76012 0.87381 0.82222 1.90869 1.50609 1.67746 1.28126 1.44353 1.57278 1.15909 1.15475 0.72575 1.15608 0.79728 0.81608 0.82741 1.91104 1.44597 1.65049 1.39692 0.93091 0.94397 0.95865 0.95052 0.88274 0.92537 0.77905 0.88628 0.89035 0.87708 0.86909 0.83718 0.84394 0.84654 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.49 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.48 2.24 -69.08 -0.15 6.33 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.71 -13.55 5.02 -54.93 -0.28 -13.82 16 14 C 0.51 8.92 6.40 -10.98 -0.07 8.85 16 15 O -0.55 -11.40 13.12 5.55 0.07 -11.32 16 16 C -0.16 -2.05 6.02 -27.88 -0.17 -2.22 16 17 C 0.13 1.55 4.14 -4.04 -0.02 1.53 16 18 N -0.54 -5.88 2.66 -119.00 -0.32 -6.20 16 19 C 0.21 1.97 6.53 -83.71 -0.55 1.42 16 20 C -0.17 -1.30 9.23 -39.49 -0.36 -1.66 16 21 C -0.04 -0.26 10.02 -39.49 -0.40 -0.65 16 22 C -0.16 -0.93 10.03 -39.55 -0.40 -1.33 16 23 C -0.01 -0.11 9.67 -39.31 -0.38 -0.49 16 24 C -0.20 -1.94 5.88 -104.91 -0.62 -2.56 16 25 C 0.57 6.12 7.96 -12.40 -0.10 6.02 16 26 O -0.50 -6.33 17.41 5.28 0.09 -6.24 16 27 N -0.66 -6.77 5.18 -16.91 -0.09 -6.86 16 28 H 0.43 3.67 8.85 -40.82 -0.36 3.31 16 29 C 0.70 8.52 8.34 -87.74 -0.73 7.79 16 30 O -0.53 -8.05 16.52 5.31 0.09 -7.96 16 31 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 32 H 0.04 0.73 5.64 -51.93 -0.29 0.43 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.39 6.53 8.54 -40.82 -0.35 6.18 16 38 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.12 6.23 -51.93 -0.32 0.80 16 41 H 0.11 1.58 7.27 -51.93 -0.38 1.20 16 42 H 0.15 1.07 6.28 -52.49 -0.33 0.74 16 43 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 44 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 45 H 0.14 0.94 7.80 -52.49 -0.41 0.53 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -31.98 373.21 -8.99 -40.97 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.63 Total: 9.02 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -4.16 Total: 5.07 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.05 Total: -50.44 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: 0.25 Total: -25.52 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.98 -8.99 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183821671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.539 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds