Wall clock time and date at job start Wed Apr 1 2020 03:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46746 * 2 1 4 4 H 1.09000 * 109.47312 * 55.00097 * 3 2 1 5 5 C 1.50701 * 109.47097 * 175.00196 * 3 2 1 6 6 H 1.08001 * 120.00213 * 119.99401 * 5 3 2 7 7 C 1.37880 * 119.99755 * 300.00020 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46734 * 90.00109 * 9 7 5 11 11 H 1.48499 * 109.47268 * 210.00057 * 9 7 5 12 12 H 1.48498 * 109.47211 * 330.00316 * 9 7 5 13 13 N 1.46506 * 109.47035 * 294.99923 * 3 2 1 14 14 C 1.34771 * 119.99635 * 85.00546 * 13 3 2 15 15 O 1.21284 * 120.00644 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99767 * 180.02562 * 14 13 3 17 17 C 1.53005 * 109.46830 * 179.97438 * 16 14 13 18 18 N 1.46506 * 109.46697 * 179.97438 * 17 16 14 19 19 C 1.38737 * 119.68241 * 89.99849 * 18 17 16 20 20 C 1.38649 * 121.59138 * 359.95292 * 19 18 17 21 21 C 1.38061 * 119.75667 * 180.02562 * 20 19 18 22 22 C 1.38651 * 120.64788 * 0.02768 * 21 20 19 23 23 C 1.37907 * 120.41813 * 359.97438 * 22 21 20 24 24 C 1.39294 * 119.50118 * 359.95251 * 23 22 21 25 25 C 1.47385 * 121.73324 * 180.02562 * 24 23 22 26 26 O 1.21600 * 120.85998 * 0.04217 * 25 24 23 27 27 N 1.35078 * 118.28325 * 180.02562 * 25 24 23 28 28 H 0.97004 * 119.36464 * 179.97438 * 27 25 24 29 29 C 1.34215 * 121.26433 * 359.74190 * 27 25 24 30 30 O 1.21568 * 118.59369 * 180.25814 * 29 27 25 31 31 H 1.08994 * 109.47010 * 299.99877 * 1 2 3 32 32 H 1.09000 * 109.47409 * 60.00095 * 1 2 3 33 33 H 1.09001 * 109.46571 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46791 * 240.00582 * 2 1 3 35 35 H 1.09000 * 109.47409 * 119.99905 * 2 1 3 36 36 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 37 37 H 0.97000 * 119.99818 * 265.00273 * 13 3 2 38 38 H 1.08999 * 109.46712 * 299.99201 * 16 14 13 39 39 H 1.08994 * 109.47068 * 59.99956 * 16 14 13 40 40 H 1.08999 * 109.46918 * 299.99194 * 17 16 14 41 41 H 1.08999 * 109.47653 * 60.00040 * 17 16 14 42 42 H 1.07997 * 120.12127 * 0.04609 * 20 19 18 43 43 H 1.08003 * 119.67424 * 179.97438 * 21 20 19 44 44 H 1.07999 * 119.78984 * 179.97438 * 22 21 20 45 45 H 1.08001 * 120.25134 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3376 2.1732 9 14 6.0050 0.8802 1.3810 10 1 6.4427 2.1132 2.0836 11 1 6.4392 -0.3108 2.1544 12 1 6.6131 0.8398 0.0269 13 7 1.6523 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3669 15 8 -0.3397 2.6320 -0.4344 16 6 0.0361 3.3376 -2.6549 17 6 -1.3832 3.8935 -2.5214 18 7 -1.7708 4.5485 -3.7732 19 6 -2.3992 3.8128 -4.7675 20 6 -2.6726 2.4628 -4.6094 21 6 -3.2993 1.7671 -5.6240 22 6 -3.6581 2.4051 -6.8015 23 6 -3.3943 3.7473 -6.9769 24 6 -2.7639 4.4610 -5.9603 25 6 -2.4590 5.8966 -6.0951 26 8 -2.7525 6.5043 -7.1066 27 7 -1.8453 6.5200 -5.0658 28 1 -1.6369 7.4647 -5.1379 29 6 -1.5225 5.8585 -3.9435 30 8 -0.9754 6.4686 -3.0455 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8294 -0.0608 2.9498 37 1 2.2718 2.1232 -1.9978 38 1 0.7274 4.1530 -2.8679 39 1 0.0671 2.6129 -3.4684 40 1 -2.0742 3.0778 -2.3086 41 1 -1.4146 4.6181 -1.7077 42 1 -2.3967 1.9573 -3.6958 43 1 -3.5112 0.7154 -5.4995 44 1 -4.1474 1.8474 -7.5864 45 1 -3.6754 4.2416 -7.8951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183821671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:53 Heat of formation + Delta-G solvation = -93.041036 kcal Electronic energy + Delta-G solvation = -30105.113687 eV Core-core repulsion = 25893.710729 eV Total energy + Delta-G solvation = -4211.402958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.35574 -40.82046 -40.31767 -39.84928 -37.32572 -36.82724 -36.19226 -34.28853 -33.22571 -32.47919 -31.96382 -30.63480 -28.93095 -26.27815 -25.85571 -24.90033 -24.50102 -22.67875 -21.83237 -21.04215 -20.72312 -20.57099 -19.07185 -18.86625 -17.93247 -17.64817 -17.14710 -16.97992 -16.79952 -16.61122 -16.45555 -16.11022 -15.62901 -15.58746 -15.37841 -15.01697 -14.87510 -14.57644 -14.40371 -14.26507 -13.60698 -13.46370 -13.32735 -13.14288 -13.09903 -12.86114 -12.68570 -12.40797 -12.23374 -12.14173 -12.09230 -11.97613 -11.69129 -11.59489 -11.56711 -11.52379 -11.02564 -10.67373 -10.48661 -10.18304 -9.59081 -9.23191 -8.15357 -6.31900 -0.40247 0.11570 0.85111 0.90425 1.44242 1.45327 1.55014 1.82306 1.84376 1.86110 2.37324 2.67048 2.79902 3.05989 3.14427 3.48102 3.72386 3.76058 3.88318 4.05609 4.19167 4.26652 4.29773 4.44050 4.55937 4.58702 4.65022 4.71822 4.77276 4.81184 4.83719 4.93139 5.04827 5.12386 5.23052 5.32989 5.42427 5.45771 5.49768 5.60458 5.65526 5.75795 5.84854 5.95502 6.08200 6.18818 6.21451 6.75624 6.76875 7.00450 7.35226 7.59938 8.89595 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.002510 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.220534 B =11150.741091 C =11959.867801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.965 3.035 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.261 1.261 13 N -0.705 5.705 14 C 0.507 3.493 15 O -0.582 6.582 16 C -0.143 4.143 17 C 0.136 3.864 18 N -0.532 5.532 19 C 0.188 3.812 20 C -0.168 4.168 21 C -0.033 4.033 22 C -0.145 4.145 23 C -0.021 4.021 24 C -0.218 4.218 25 C 0.568 3.432 26 O -0.524 6.524 27 N -0.655 5.655 28 H 0.437 0.563 29 C 0.702 3.298 30 O -0.570 6.570 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.264 0.736 37 H 0.403 0.597 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.151 0.849 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 1.751 -20.678 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.185 1.185 13 N -0.354 5.354 14 C 0.293 3.707 15 O -0.464 6.464 16 C -0.184 4.184 17 C 0.015 3.985 18 N -0.254 5.254 19 C 0.090 3.910 20 C -0.189 4.189 21 C -0.052 4.052 22 C -0.164 4.164 23 C -0.040 4.040 24 C -0.224 4.224 25 C 0.361 3.639 26 O -0.399 6.399 27 N -0.322 5.322 28 H 0.280 0.720 29 C 0.404 3.596 30 O -0.445 6.445 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.238 0.762 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.105 0.895 42 H 0.168 0.832 43 H 0.186 0.814 44 H 0.185 0.815 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.562 2.186 -19.787 24.665 hybrid contribution 1.546 0.846 0.465 1.822 sum -13.016 3.032 -19.322 23.494 Atomic orbital electron populations 1.21676 0.96488 0.99266 1.00564 1.21765 0.94218 0.98796 1.01216 1.18361 0.93334 0.89429 0.81438 0.98390 1.21607 0.91801 1.38718 1.06574 0.91311 1.25711 1.02971 0.94512 0.95147 1.70038 1.36895 1.38416 1.09820 0.85450 0.79617 0.77334 0.78566 1.20746 1.20914 1.18509 1.46265 1.15618 1.55936 1.17557 1.20701 0.81958 0.78412 0.89629 1.90686 1.52315 1.61111 1.42258 1.21890 0.97900 1.02235 0.96398 1.21465 0.95858 0.98694 0.82494 1.44732 1.55998 1.06737 1.17961 1.18266 0.93057 0.92978 0.86741 1.21077 1.04402 0.90632 1.02743 1.21740 0.90880 1.01612 0.90963 1.21554 1.01940 0.93588 0.99306 1.21234 0.91617 0.94520 0.96606 1.19483 1.13063 0.92325 0.97489 1.18703 0.75420 0.88042 0.81704 1.90852 1.51787 1.68416 1.28887 1.44272 1.56803 1.16203 1.14956 0.71993 1.15694 0.79379 0.81948 0.82581 1.91081 1.46537 1.65979 1.40941 0.95694 0.92900 0.93566 0.93935 0.91393 0.92654 0.76247 0.88452 0.85697 0.86215 0.89487 0.83162 0.81367 0.81541 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 8.51 71.98 0.61 -4.39 16 2 C -0.12 -5.61 5.45 30.60 0.17 -5.44 16 3 C 0.28 13.59 2.24 44.25 0.10 13.69 16 4 H 0.00 -0.11 7.58 -2.39 -0.02 -0.12 16 5 C -0.55 -28.34 8.73 25.60 0.22 -28.12 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -51.37 11.29 21.45 0.24 -51.13 16 9 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 13 N -0.71 -26.75 5.02 -446.08 -2.24 -28.99 16 14 C 0.51 17.54 6.40 87.66 0.56 18.11 16 15 O -0.58 -24.47 13.12 -3.04 -0.04 -24.51 16 16 C -0.14 -3.40 6.02 29.85 0.18 -3.22 16 17 C 0.14 3.15 4.14 86.38 0.36 3.51 16 18 N -0.53 -11.21 2.66 -648.86 -1.72 -12.93 16 19 C 0.19 3.22 6.53 38.71 0.25 3.47 16 20 C -0.17 -2.08 9.23 22.33 0.21 -1.87 16 21 C -0.03 -0.25 10.02 22.33 0.22 -0.03 16 22 C -0.15 -1.07 10.03 22.29 0.22 -0.85 16 23 C -0.02 -0.26 9.67 22.45 0.22 -0.04 16 24 C -0.22 -3.81 5.88 -20.05 -0.12 -3.93 16 25 C 0.57 11.99 7.96 86.60 0.69 12.68 16 26 O -0.52 -13.14 17.41 -4.03 -0.07 -13.21 16 27 N -0.65 -13.49 5.18 -444.09 -2.30 -15.79 16 28 H 0.44 7.68 8.85 -92.71 -0.82 6.86 16 29 C 0.70 17.14 8.34 179.34 1.49 18.63 16 30 O -0.57 -17.76 16.52 -3.93 -0.06 -17.82 16 31 H 0.02 1.11 7.85 -2.39 -0.02 1.09 16 32 H 0.05 1.97 5.64 -2.39 -0.01 1.95 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 3.61 5.95 -2.39 -0.01 3.59 16 36 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.40 12.96 8.54 -92.71 -0.79 12.16 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.12 2.17 8.14 -2.39 -0.02 2.16 16 40 H 0.12 2.39 6.23 -2.39 -0.01 2.38 16 41 H 0.09 2.51 7.27 -2.39 -0.02 2.49 16 42 H 0.15 1.69 6.28 -2.91 -0.02 1.68 16 43 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 44 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 45 H 0.15 1.64 7.80 -2.91 -0.02 1.61 16 Total: -1.00 -72.22 373.21 1.12 -71.10 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -0.55 Total: 26.08 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 5.84 Total: 23.55 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -6.02 Total: -108.84 kcal Atomic # 8 Polarization: -55.36 SS G_CDS: -0.17 Total: -55.53 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -72.22 1.12 -71.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183821671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.944 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds