Wall clock time and date at job start Wed Apr 1 2020 03:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47392 * 2 1 4 4 H 1.09009 * 109.47353 * 305.00240 * 3 2 1 5 5 C 1.50693 * 109.47229 * 185.00080 * 3 2 1 6 6 H 1.08007 * 119.99597 * 239.99894 * 5 3 2 7 7 C 1.37876 * 120.00222 * 59.99684 * 5 3 2 8 8 N 1.31511 * 119.99841 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00162 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47048 * 89.99928 * 9 7 5 11 11 H 1.48490 * 109.47104 * 210.00298 * 9 7 5 12 12 H 1.48503 * 109.47085 * 330.00254 * 9 7 5 13 13 N 1.46504 * 109.47152 * 64.99575 * 3 2 1 14 14 C 1.34774 * 120.00080 * 274.99914 * 13 3 2 15 15 O 1.21278 * 120.00208 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99847 * 180.02562 * 14 13 3 17 17 C 1.52992 * 109.47382 * 180.02562 * 16 14 13 18 18 N 1.46495 * 109.47619 * 179.97438 * 17 16 14 19 19 C 1.38738 * 119.67950 * 89.99662 * 18 17 16 20 20 C 1.38642 * 121.59121 * 359.97438 * 19 18 17 21 21 C 1.38069 * 119.75858 * 180.02562 * 20 19 18 22 22 C 1.38648 * 120.64702 * 359.97438 * 21 20 19 23 23 C 1.37915 * 120.41665 * 0.04220 * 22 21 20 24 24 C 1.39289 * 119.50377 * 359.97438 * 23 22 21 25 25 C 1.47389 * 121.73502 * 179.97438 * 24 23 22 26 26 O 1.21593 * 120.85808 * 0.02562 * 25 24 23 27 27 N 1.35072 * 118.27986 * 180.02562 * 25 24 23 28 28 H 0.96996 * 119.36673 * 179.97438 * 27 25 24 29 29 C 1.34213 * 121.26775 * 359.97438 * 27 25 24 30 30 O 1.21575 * 118.59383 * 180.02562 * 29 27 25 31 31 H 1.09002 * 109.47278 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46980 * 300.00563 * 1 2 3 33 33 H 1.09008 * 109.46810 * 59.99874 * 1 2 3 34 34 H 1.08998 * 109.46980 * 239.99437 * 2 1 3 35 35 H 1.09001 * 109.46446 * 120.00121 * 2 1 3 36 36 H 0.97001 * 119.99807 * 179.97438 * 8 7 5 37 37 H 0.97000 * 119.99563 * 95.00285 * 13 3 2 38 38 H 1.09003 * 109.46930 * 59.99842 * 16 14 13 39 39 H 1.09009 * 109.47081 * 300.00434 * 16 14 13 40 40 H 1.09010 * 109.47003 * 59.99708 * 17 16 14 41 41 H 1.09000 * 109.47545 * 300.00240 * 17 16 14 42 42 H 1.08002 * 120.12279 * 0.03386 * 20 19 18 43 43 H 1.08002 * 119.67592 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.79252 * 180.02562 * 22 21 20 45 45 H 1.08005 * 120.24598 * 179.70812 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4441 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0051 0.8797 -1.3811 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8163 12 1 6.5577 2.0717 -0.6888 13 7 1.6524 2.0974 1.2518 14 6 0.4352 2.6644 1.3668 15 8 -0.3395 2.6320 0.4343 16 6 0.0367 3.3387 2.6543 17 6 -1.3825 3.8945 2.5211 18 7 -1.7701 4.5494 3.7728 19 6 -1.5052 5.8994 3.9524 20 6 -0.8779 6.6531 2.9724 21 6 -0.6322 7.9940 3.1914 22 6 -1.0072 8.5958 4.3828 23 6 -1.6319 7.8620 5.3694 24 6 -1.8853 6.5083 5.1611 25 6 -2.5492 5.6778 6.1817 26 8 -2.8981 6.1555 7.2441 27 7 -2.7600 4.3723 5.9064 28 1 -3.1953 3.8111 6.5670 29 6 -2.3787 3.8367 4.7364 30 8 -2.5929 2.6563 4.5395 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5139 0.8900 36 1 3.8293 -0.0606 -2.9502 37 1 2.2719 2.1231 1.9977 38 1 0.7282 4.1542 2.8665 39 1 0.0681 2.6146 3.4686 40 1 -2.0737 3.0786 2.3091 41 1 -1.4143 4.6184 1.7068 42 1 -0.5825 6.1931 2.0409 43 1 -0.1430 8.5798 2.4272 44 1 -0.8086 9.6458 4.5394 45 1 -1.9187 8.3325 6.2983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183821687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:56 Heat of formation + Delta-G solvation = -92.839825 kcal Electronic energy + Delta-G solvation = -30079.333156 eV Core-core repulsion = 25867.938923 eV Total energy + Delta-G solvation = -4211.394233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.35612 -40.82210 -40.31540 -39.85324 -37.32889 -36.82948 -36.19126 -34.28100 -33.23851 -32.48942 -31.98077 -30.63672 -28.93755 -26.27895 -25.85779 -24.90648 -24.51043 -22.69023 -21.84913 -21.04739 -20.72367 -20.57210 -19.07050 -18.86222 -17.92616 -17.64973 -17.13965 -16.98302 -16.80758 -16.56959 -16.49845 -16.09749 -15.63659 -15.60708 -15.42197 -15.00999 -14.76009 -14.58994 -14.51422 -14.27602 -13.60871 -13.47228 -13.32198 -13.15221 -13.10901 -12.87591 -12.65351 -12.41545 -12.24050 -12.14399 -12.08576 -12.01178 -11.68879 -11.59477 -11.57129 -11.56338 -11.02213 -10.67202 -10.48766 -10.19047 -9.59535 -9.23590 -8.14036 -6.30849 -0.40775 0.11035 0.85510 0.90081 1.46259 1.46947 1.56867 1.82169 1.84272 1.86273 2.38270 2.67229 2.79491 3.05554 3.15771 3.47694 3.72505 3.75714 3.87857 4.05700 4.18555 4.26023 4.28989 4.44342 4.51464 4.57419 4.59647 4.71170 4.76470 4.79517 4.81576 4.92668 5.04526 5.09838 5.22514 5.29003 5.41912 5.45064 5.45769 5.58599 5.65463 5.75036 5.82029 5.94470 6.08093 6.18737 6.19656 6.75826 6.77790 7.00530 7.36260 7.60095 8.91100 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015940 B = 0.002554 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.209930 B =10958.830294 C =11966.280565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.280 3.720 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.705 5.705 14 C 0.507 3.493 15 O -0.582 6.582 16 C -0.144 4.144 17 C 0.136 3.864 18 N -0.532 5.532 19 C 0.188 3.812 20 C -0.169 4.169 21 C -0.034 4.034 22 C -0.145 4.145 23 C -0.020 4.020 24 C -0.217 4.217 25 C 0.569 3.431 26 O -0.524 6.524 27 N -0.654 5.654 28 H 0.437 0.563 29 C 0.703 3.297 30 O -0.569 6.569 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.403 0.597 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.149 0.851 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 17.297 14.605 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.162 4.162 3 C 0.176 3.824 4 H 0.023 0.977 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.354 5.354 14 C 0.293 3.707 15 O -0.464 6.464 16 C -0.185 4.185 17 C 0.015 3.985 18 N -0.254 5.254 19 C 0.090 3.910 20 C -0.189 4.189 21 C -0.053 4.053 22 C -0.164 4.164 23 C -0.039 4.039 24 C -0.223 4.223 25 C 0.362 3.638 26 O -0.399 6.399 27 N -0.322 5.322 28 H 0.280 0.720 29 C 0.404 3.596 30 O -0.444 6.444 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.238 0.762 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.136 0.864 42 H 0.167 0.833 43 H 0.185 0.815 44 H 0.185 0.815 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.286 16.766 14.091 23.416 hybrid contribution 0.769 -0.974 0.246 1.265 sum -7.518 15.792 14.338 22.616 Atomic orbital electron populations 1.21679 0.96960 0.99015 1.00394 1.21805 0.93748 0.99554 1.01082 1.18343 0.93505 0.88971 0.81576 0.97742 1.21588 0.91567 1.38780 1.06525 0.91024 1.25736 1.03048 0.94488 0.95139 1.70044 1.36961 1.38429 1.09880 0.85421 0.79472 0.78798 0.77097 1.20099 1.21357 1.18700 1.46265 1.15665 1.55891 1.17574 1.20695 0.81798 0.78666 0.89519 1.90683 1.52018 1.61280 1.42375 1.21891 0.98106 1.02617 0.95841 1.21458 0.95517 0.99190 0.82334 1.44731 1.55623 1.08074 1.17007 1.18255 0.95767 0.82327 0.94674 1.21071 1.03238 0.95429 0.99203 1.21735 0.93127 0.92969 0.97455 1.21552 0.99776 1.02109 0.92953 1.21239 0.92727 0.89918 1.00066 1.19487 1.11848 0.96968 0.94029 1.18679 0.77235 0.80963 0.86952 1.90851 1.50797 1.72454 1.25799 1.44261 1.57604 1.12632 1.17711 0.71960 1.15682 0.78645 0.84816 0.80419 1.91078 1.59486 1.14700 1.79124 0.94068 0.93734 0.95148 0.91114 0.94470 0.92676 0.76247 0.85967 0.88207 0.89271 0.86425 0.83312 0.81492 0.81543 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.52 71.98 0.61 -4.86 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.78 16 3 C 0.28 13.64 2.24 44.24 0.10 13.74 16 4 H 0.00 0.27 7.58 -2.38 -0.02 0.25 16 5 C -0.55 -27.75 8.73 25.60 0.22 -27.53 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -51.16 11.29 21.45 0.24 -50.92 16 9 Si 0.97 40.91 29.54 68.60 2.03 42.94 16 10 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 N -0.71 -26.75 5.02 -446.11 -2.24 -28.99 16 14 C 0.51 17.58 6.40 87.66 0.56 18.14 16 15 O -0.58 -24.48 13.12 -3.02 -0.04 -24.52 16 16 C -0.14 -3.42 6.02 29.85 0.18 -3.24 16 17 C 0.14 3.16 4.13 86.38 0.36 3.52 16 18 N -0.53 -11.22 2.66 -648.89 -1.72 -12.94 16 19 C 0.19 3.29 6.53 38.72 0.25 3.54 16 20 C -0.17 -2.22 9.23 22.33 0.21 -2.02 16 21 C -0.03 -0.29 10.02 22.33 0.22 -0.06 16 22 C -0.15 -1.15 10.03 22.29 0.22 -0.92 16 23 C -0.02 -0.26 9.67 22.45 0.22 -0.04 16 24 C -0.22 -3.85 5.88 -20.05 -0.12 -3.97 16 25 C 0.57 11.96 7.96 86.61 0.69 12.65 16 26 O -0.52 -13.08 17.41 -4.01 -0.07 -13.15 16 27 N -0.65 -13.31 5.18 -444.10 -2.30 -15.61 16 28 H 0.44 7.53 8.84 -92.71 -0.82 6.71 16 29 C 0.70 16.92 8.34 179.34 1.49 18.41 16 30 O -0.57 -17.31 16.52 -3.95 -0.07 -17.38 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.90 5.64 -2.39 -0.01 1.89 16 33 H 0.03 1.43 7.85 -2.38 -0.02 1.42 16 34 H 0.07 3.85 5.95 -2.39 -0.01 3.84 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 37 H 0.40 12.94 8.54 -92.71 -0.79 12.15 16 38 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.09 2.53 7.29 -2.38 -0.02 2.51 16 41 H 0.12 2.42 6.22 -2.39 -0.01 2.40 16 42 H 0.15 1.84 6.28 -2.91 -0.02 1.83 16 43 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 44 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 45 H 0.15 1.67 7.80 -2.91 -0.02 1.65 16 Total: -1.00 -70.95 373.22 1.12 -69.83 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.55 Total: 27.86 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 5.84 Total: 22.88 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -6.02 Total: -108.46 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -0.17 Total: -55.05 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -70.95 1.12 -69.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183821687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.010 kcal (2) G-P(sol) polarization free energy of solvation -70.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds