Wall clock time and date at job start Wed Apr 1 2020 03:39:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47241 * 2 1
4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1
5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1
6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2
7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2
8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3
9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3
10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5
11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5
12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5
13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1
14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2
15 15 O 1.21560 * 120.00142 * 359.97438 * 14 13 3
16 16 C 1.47845 * 120.00224 * 180.02562 * 14 13 3
17 17 C 1.39576 * 120.14739 * 359.71534 * 16 14 13
18 18 C 1.37952 * 119.85449 * 179.78976 * 17 16 14
19 19 C 1.38354 * 120.14715 * 0.49451 * 18 17 16
20 20 C 1.50704 * 119.85791 * 179.72126 * 19 18 17
21 21 C 1.53004 * 110.53293 * 237.19237 * 20 19 18
22 22 N 1.47314 * 110.59601 * 0.02562 * 20 19 18
23 23 C 1.34527 * 106.61869 * 118.53020 * 22 20 19
24 24 O 1.21540 * 123.77020 * 179.97438 * 23 22 20
25 25 N 1.33787 * 112.45718 * 359.97438 * 23 22 20
26 26 C 1.34770 * 111.64862 * 0.02562 * 25 23 22
27 27 O 1.21228 * 127.16360 * 180.02562 * 26 25 23
28 28 C 1.38367 * 120.29121 * 359.73686 * 19 18 17
29 29 C 1.37955 * 120.14237 * 0.02997 * 28 19 18
30 30 H 1.08991 * 109.47795 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.47374 * 300.00289 * 1 2 3
32 32 H 1.09003 * 109.46563 * 59.99857 * 1 2 3
33 33 H 1.09003 * 109.46905 * 239.99963 * 2 1 3
34 34 H 1.09003 * 109.46563 * 120.00143 * 2 1 3
35 35 H 0.97005 * 119.99651 * 179.97438 * 8 7 5
36 36 H 0.97003 * 120.00221 * 265.00067 * 13 3 2
37 37 H 1.08003 * 120.06448 * 0.02562 * 17 16 14
38 38 H 1.07998 * 119.92884 * 180.23392 * 18 17 16
39 39 H 1.08997 * 109.47172 * 59.99376 * 21 20 19
40 40 H 1.09003 * 109.46984 * 179.97438 * 21 20 19
41 41 H 1.09002 * 109.46464 * 299.99493 * 21 20 19
42 42 H 0.97002 * 126.68890 * 298.48947 * 22 20 19
43 43 H 0.97004 * 124.18146 * 179.97438 * 25 23 22
44 44 H 1.07999 * 119.92387 * 180.02562 * 28 19 18
45 45 H 1.08007 * 120.07093 * 180.02562 * 29 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6055 1.9815 0.8418
5 6 3.5419 1.4441 0.1238
6 1 4.1473 1.8887 -0.6522
7 6 4.1430 0.8833 1.2308
8 7 3.4059 0.3419 2.1758
9 14 6.0043 0.8923 1.3879
10 1 6.4946 2.2940 1.3851
11 1 6.3969 0.2326 2.6592
12 1 6.6013 0.1568 0.2442
13 7 1.6526 2.0974 -1.2518
14 6 0.4353 2.6644 -1.3670
15 8 -0.3412 2.6320 -0.4323
16 6 0.0441 3.3249 -2.6305
17 6 0.9351 3.3682 -3.7040
18 6 0.5621 3.9823 -4.8816
19 6 -0.6882 4.5634 -4.9966
20 6 -1.0866 5.2380 -6.2840
21 6 -1.4730 6.6962 -6.0285
22 7 0.0039 5.1559 -7.2710
23 6 -0.4768 4.4625 -8.3188
24 8 0.1699 4.2113 -9.3167
25 7 -1.7463 4.0802 -8.1394
26 6 -2.2252 4.4894 -6.9480
27 8 -3.3353 4.2979 -6.5001
28 6 -1.5745 4.5282 -3.9346
29 6 -1.2158 3.9131 -2.7530
30 1 -0.3634 -1.0275 -0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3632 0.5139 -0.8900
33 1 1.8933 -0.5139 -0.8900
34 1 1.8932 -0.5139 0.8900
35 1 3.8288 -0.0530 2.9544
36 1 2.2721 2.1230 -1.9977
37 1 1.9129 2.9186 -3.6140
38 1 1.2491 4.0132 -5.7143
39 1 -0.6236 7.2273 -5.5989
40 1 -1.7572 7.1670 -6.9697
41 1 -2.3132 6.7332 -5.3351
42 1 0.8947 5.5297 -7.1829
43 1 -2.2591 3.5719 -8.7873
44 1 -2.5492 4.9834 -4.0310
45 1 -1.9086 3.8860 -1.9249
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183842604.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:39:54
Heat of formation + Delta-G solvation = -55.185121 kcal
Electronic energy + Delta-G solvation = -29922.547079 eV
Core-core repulsion = 25712.785677 eV
Total energy + Delta-G solvation = -4209.761402 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.03606 -39.97482 -39.09830 -38.36436 -36.71221 -35.16609 -34.80015 -32.71169
-32.02485 -31.01385 -31.00772 -29.64248 -27.04173 -25.68427 -23.96263 -23.45227
-23.04495 -22.33382 -21.26663 -20.31080 -19.39463 -18.82176 -18.04658 -17.37100
-17.11120 -16.46249 -16.26267 -15.92413 -15.62553 -15.43062 -14.96975 -14.75852
-14.59745 -14.54175 -14.16841 -13.87235 -13.67041 -13.37262 -13.09081 -12.90468
-12.74198 -12.59211 -12.11087 -11.90172 -11.57669 -11.44362 -11.28074 -11.15967
-11.03291 -10.85812 -10.82792 -10.71519 -10.37075 -10.22328 -10.06957 -9.67675
-9.19746 -9.14662 -9.09629 -8.96662 -8.54448 -7.89701 -6.16396 -4.26365
0.66044 1.15591 1.22240 1.95764 2.55404 2.59220 3.08604 3.22653
3.28445 3.29060 3.50756 3.82769 3.96220 4.03554 4.22570 4.33212
4.66822 4.76388 4.78627 4.98604 5.05936 5.14881 5.18836 5.25613
5.39873 5.48794 5.57296 5.61418 5.82460 6.12939 6.14798 6.27112
6.34201 6.36608 6.42818 6.44639 6.62696 6.67782 6.90692 7.00893
7.15899 7.30859 7.37281 7.57046 7.67137 7.67709 7.84803 8.13120
8.57153 8.71422 9.02088 9.40857 10.88917
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.017103 B = 0.002448 C = 0.002290
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1636.762164 B =11436.368221 C =12225.633543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.127 4.127
3 C 0.270 3.730
4 H 0.051 0.949
5 C -0.537 4.537
6 H 0.060 0.940
7 C 0.068 3.932
8 N -0.881 5.881
9 Si 0.901 3.099
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.276 1.276
13 N -0.699 5.699
14 C 0.538 3.462
15 O -0.541 6.541
16 C -0.105 4.105
17 C -0.088 4.088
18 C -0.108 4.108
19 C -0.094 4.094
20 C 0.167 3.833
21 C -0.144 4.144
22 N -0.716 5.716
23 C 0.708 3.292
24 O -0.541 6.541
25 N -0.680 5.680
26 C 0.537 3.463
27 O -0.453 6.453
28 C -0.101 4.101
29 C -0.062 4.062
30 H 0.023 0.977
31 H 0.050 0.950
32 H 0.038 0.962
33 H 0.031 0.969
34 H 0.100 0.900
35 H 0.266 0.734
36 H 0.387 0.613
37 H 0.134 0.866
38 H 0.128 0.872
39 H 0.085 0.915
40 H 0.071 0.929
41 H 0.088 0.912
42 H 0.443 0.557
43 H 0.434 0.566
44 H 0.135 0.865
45 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.700 11.369 -18.625 23.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.166 4.166
3 C 0.169 3.831
4 H 0.069 0.931
5 C -0.575 4.575
6 H 0.079 0.921
7 C -0.136 4.136
8 N -0.518 5.518
9 Si 0.729 3.271
10 H -0.202 1.202
11 H -0.211 1.211
12 H -0.201 1.201
13 N -0.347 5.347
14 C 0.323 3.677
15 O -0.420 6.420
16 C -0.109 4.109
17 C -0.107 4.107
18 C -0.126 4.126
19 C -0.096 4.096
20 C 0.076 3.924
21 C -0.202 4.202
22 N -0.381 5.381
23 C 0.407 3.593
24 O -0.415 6.415
25 N -0.351 5.351
26 C 0.322 3.678
27 O -0.320 6.320
28 C -0.120 4.120
29 C -0.081 4.081
30 H 0.042 0.958
31 H 0.069 0.931
32 H 0.057 0.943
33 H 0.050 0.950
34 H 0.118 0.882
35 H 0.076 0.924
36 H 0.221 0.779
37 H 0.151 0.849
38 H 0.146 0.854
39 H 0.104 0.896
40 H 0.090 0.910
41 H 0.107 0.893
42 H 0.288 0.712
43 H 0.276 0.724
44 H 0.152 0.848
45 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -9.441 11.020 -17.955 23.086
hybrid contribution 1.539 -0.199 -0.551 1.647
sum -7.902 10.821 -18.507 22.848
Atomic orbital electron populations
1.21847 0.98313 0.98151 1.01229 1.21940 0.92647 0.99687 1.02356
1.18832 0.94293 0.89236 0.80745 0.93102 1.21175 0.90607 1.39488
1.06267 0.92140 1.24880 0.98640 0.94729 0.95337 1.69883 1.35282
1.37439 1.09234 0.86512 0.84775 0.78336 0.77502 1.20162 1.21101
1.20140 1.46485 1.14279 1.55243 1.18658 1.18154 0.83144 0.79603
0.86807 1.90754 1.51431 1.59997 1.39864 1.20526 0.95307 0.99886
0.95142 1.21394 0.99465 0.97612 0.92204 1.20822 0.95639 0.98192
0.97970 1.19460 0.95883 1.01075 0.93176 1.20163 0.85765 0.98104
0.88397 1.22050 1.04092 0.90423 1.03677 1.45657 1.16302 1.58887
1.17235 1.15808 0.81234 0.78559 0.83712 1.91080 1.60713 1.60123
1.29554 1.44315 1.14907 1.54526 1.21327 1.20603 0.88208 0.78044
0.80961 1.90852 1.19700 1.54288 1.67204 1.20931 0.99375 0.99552
0.92125 1.21306 0.95374 0.94014 0.97447 0.95770 0.93072 0.94342
0.94996 0.88203 0.92435 0.77917 0.84870 0.85408 0.89622 0.90974
0.89278 0.71160 0.72371 0.84753 0.84062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16
2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16
3 C 0.27 6.61 2.24 -69.09 -0.15 6.46 16
4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16
5 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16
6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16
7 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16
8 N -0.88 -24.22 11.30 55.43 0.63 -23.59 16
9 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16
10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
11 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16
12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
13 N -0.70 -13.96 4.97 -55.89 -0.28 -14.24 16
14 C 0.54 10.35 6.34 -12.33 -0.08 10.27 16
15 O -0.54 -12.19 13.48 5.31 0.07 -12.12 16
16 C -0.11 -1.55 5.87 -104.97 -0.62 -2.17 16
17 C -0.09 -1.04 9.54 -39.19 -0.37 -1.42 16
18 C -0.11 -1.03 9.36 -39.64 -0.37 -1.40 16
19 C -0.09 -0.85 4.83 -104.53 -0.51 -1.36 16
20 C 0.17 1.16 1.17 -133.24 -0.16 1.00 16
21 C -0.14 -0.70 8.77 37.16 0.33 -0.38 16
22 N -0.72 -4.46 4.56 -54.02 -0.25 -4.70 16
23 C 0.71 6.06 8.99 -88.02 -0.79 5.27 16
24 O -0.54 -6.51 18.04 5.33 0.10 -6.41 16
25 N -0.68 -4.97 5.70 -15.79 -0.09 -5.06 16
26 C 0.54 4.53 7.35 -10.55 -0.08 4.45 16
27 O -0.45 -4.90 17.60 5.60 0.10 -4.80 16
28 C -0.10 -1.04 8.79 -39.64 -0.35 -1.39 16
29 C -0.06 -0.82 9.60 -39.19 -0.38 -1.19 16
30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16
32 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16
33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
34 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16
35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16
36 H 0.39 6.65 6.57 -40.82 -0.27 6.39 16
37 H 0.13 1.44 6.41 -52.48 -0.34 1.10 16
38 H 0.13 0.94 6.69 -52.49 -0.35 0.59 16
39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
41 H 0.09 0.43 7.32 -51.93 -0.38 0.05 16
42 H 0.44 1.91 8.56 -40.82 -0.35 1.56 16
43 H 0.43 2.36 8.96 -40.82 -0.37 2.00 16
44 H 0.13 1.16 7.31 -52.49 -0.38 0.78 16
45 H 0.14 1.90 7.65 -52.48 -0.40 1.50 16
LS Contribution 372.49 15.07 5.61 5.61
Total: -1.00 -32.88 372.49 -8.35 -41.23
By element:
Atomic # 1 Polarization: 14.58 SS G_CDS: -5.47 Total: 9.11 kcal
Atomic # 6 Polarization: 3.57 SS G_CDS: -3.75 Total: -0.17 kcal
Atomic # 7 Polarization: -47.60 SS G_CDS: 0.01 Total: -47.59 kcal
Atomic # 8 Polarization: -23.59 SS G_CDS: 0.27 Total: -23.33 kcal
Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -32.88 -8.35 -41.23 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183842604.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.958 kcal
(2) G-P(sol) polarization free energy of solvation -32.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.185 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds