Wall clock time and date at job start Wed Apr 1 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47512 * 2 1 4 4 H 1.08994 * 109.46914 * 305.00583 * 3 2 1 5 5 C 1.50694 * 109.47142 * 184.99974 * 3 2 1 6 6 H 1.08001 * 119.99760 * 239.99956 * 5 3 2 7 7 C 1.37872 * 120.00102 * 60.00545 * 5 3 2 8 8 N 1.31511 * 120.00363 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99851 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47480 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46949 * 119.99887 * 9 7 5 12 12 H 1.48497 * 109.47372 * 239.99658 * 9 7 5 13 13 N 1.46506 * 109.46652 * 64.99689 * 3 2 1 14 14 C 1.34777 * 120.00268 * 275.00452 * 13 3 2 15 15 O 1.21552 * 119.99899 * 0.27240 * 14 13 3 16 16 C 1.47846 * 119.99810 * 180.02562 * 14 13 3 17 17 C 1.39574 * 120.14263 * 359.72495 * 16 14 13 18 18 C 1.37965 * 119.84644 * 179.76741 * 17 16 14 19 19 C 1.38361 * 120.14628 * 0.48616 * 18 17 16 20 20 C 1.50697 * 119.85075 * 179.74575 * 19 18 17 21 21 C 1.52999 * 110.53622 * 92.85259 * 20 19 18 22 22 N 1.47313 * 110.59713 * 215.84524 * 20 19 18 23 23 C 1.34527 * 106.62193 * 118.52450 * 22 20 19 24 24 O 1.21528 * 123.77418 * 180.02562 * 23 22 20 25 25 N 1.33796 * 112.45435 * 0.02562 * 23 22 20 26 26 C 1.34763 * 111.64359 * 359.97438 * 25 23 22 27 27 O 1.21238 * 127.15713 * 180.02562 * 26 25 23 28 28 C 1.38353 * 120.29260 * 359.76258 * 19 18 17 29 29 C 1.37966 * 120.14854 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47158 * 59.99740 * 1 2 3 31 31 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47163 * 300.00052 * 1 2 3 33 33 H 1.09004 * 109.47334 * 240.00479 * 2 1 3 34 34 H 1.09000 * 109.47158 * 120.00260 * 2 1 3 35 35 H 0.96995 * 120.00335 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99689 * 95.00568 * 13 3 2 37 37 H 1.07989 * 120.07782 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.92461 * 180.22897 * 18 17 16 39 39 H 1.08998 * 109.47687 * 59.99623 * 21 20 19 40 40 H 1.09003 * 109.47315 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.47070 * 299.99289 * 21 20 19 42 42 H 0.96999 * 126.69144 * 298.51058 * 22 20 19 43 43 H 0.96997 * 124.17247 * 180.02562 * 25 23 22 44 44 H 1.08004 * 119.92940 * 179.97438 * 28 19 18 45 45 H 1.07999 * 120.07558 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3817 10 1 6.5988 1.5460 -0.1941 11 1 6.4970 -0.5177 -1.4630 12 1 6.3991 1.6167 -2.6101 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3430 2.6279 0.4339 16 6 0.0442 3.3258 2.6302 17 6 0.9314 3.3598 3.7072 18 6 0.5621 3.9829 4.8815 19 6 -0.6882 4.5643 4.9962 20 6 -1.0867 5.2381 6.2839 21 6 -0.7610 6.7320 6.2311 22 7 -2.5185 5.0260 6.5582 23 6 -2.5921 4.3527 7.7205 24 8 -3.6371 4.0134 8.2397 25 7 -1.3860 4.0984 8.2410 26 6 -0.3972 4.5834 7.4644 27 8 0.7959 4.5110 7.6675 28 6 -1.5741 4.5295 3.9342 29 6 -1.2158 3.9134 2.7528 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8293 -0.0617 -2.9495 36 1 2.2719 2.1231 1.9978 37 1 1.9058 2.9025 3.6204 38 1 1.2490 4.0132 5.7144 39 1 -1.3050 7.1937 5.4072 40 1 -1.0562 7.2017 7.1694 41 1 0.3102 6.8652 6.0792 42 1 -3.2631 5.3156 6.0081 43 1 -1.2414 3.6230 9.0740 44 1 -2.5488 4.9848 4.0303 45 1 -1.9085 3.8866 1.9246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183842623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:58 Heat of formation + Delta-G solvation = -55.725922 kcal Electronic energy + Delta-G solvation = -29927.826307 eV Core-core repulsion = 25718.041454 eV Total energy + Delta-G solvation = -4209.784853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.05329 -39.98462 -39.15206 -38.32408 -36.74475 -35.16737 -34.81237 -32.62533 -31.97013 -31.33437 -30.70880 -29.73995 -27.04832 -25.69800 -23.99114 -23.57597 -22.88005 -22.37609 -21.25431 -20.32131 -19.42275 -18.80916 -18.04727 -17.38956 -17.11571 -16.47085 -16.27271 -15.99704 -15.57457 -15.43158 -14.96598 -14.71386 -14.57334 -14.47634 -14.30065 -14.00459 -13.50698 -13.37066 -13.06220 -12.98368 -12.73999 -12.60204 -12.14121 -11.87378 -11.58573 -11.52217 -11.28919 -11.20361 -10.99731 -10.87832 -10.83002 -10.57722 -10.34561 -10.22571 -10.06466 -9.67430 -9.19286 -9.15359 -9.07962 -8.98195 -8.54372 -7.89341 -6.16168 -4.25831 0.67848 1.10779 1.21950 1.94122 2.55178 2.58520 3.12285 3.21422 3.29633 3.31971 3.39935 3.83319 3.96924 4.02767 4.28234 4.33734 4.61187 4.76719 4.83924 4.98839 5.07146 5.15351 5.18883 5.24882 5.40544 5.46124 5.56109 5.60082 5.85873 6.12378 6.15954 6.25751 6.32784 6.36374 6.42774 6.44251 6.62610 6.67525 6.88901 7.00954 7.15861 7.30997 7.37551 7.57766 7.66891 7.68309 7.85243 8.13517 8.57697 8.72266 9.02435 9.41541 10.89224 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.002414 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.723711 B =11595.168819 C =12281.256376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.699 5.699 14 C 0.538 3.462 15 O -0.542 6.542 16 C -0.106 4.106 17 C -0.083 4.083 18 C -0.117 4.117 19 C -0.091 4.091 20 C 0.166 3.834 21 C -0.144 4.144 22 N -0.714 5.714 23 C 0.708 3.292 24 O -0.542 6.542 25 N -0.678 5.678 26 C 0.538 3.462 27 O -0.455 6.455 28 C -0.105 4.105 29 C -0.064 4.064 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.388 0.612 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.442 0.558 43 H 0.434 0.566 44 H 0.125 0.875 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 11.310 18.656 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.323 3.677 15 O -0.422 6.422 16 C -0.109 4.109 17 C -0.102 4.102 18 C -0.135 4.135 19 C -0.092 4.092 20 C 0.075 3.925 21 C -0.202 4.202 22 N -0.379 5.379 23 C 0.407 3.593 24 O -0.415 6.415 25 N -0.349 5.349 26 C 0.323 3.677 27 O -0.323 6.323 28 C -0.123 4.123 29 C -0.083 4.083 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.221 0.779 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.287 0.713 43 H 0.277 0.723 44 H 0.143 0.857 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.351 10.981 18.095 23.140 hybrid contribution 1.054 -0.214 0.371 1.137 sum -8.297 10.767 18.465 22.929 Atomic orbital electron populations 1.21845 0.98329 0.98122 1.01217 1.21942 0.92638 0.99690 1.02386 1.18848 0.94355 0.89239 0.80738 0.93107 1.21249 0.90598 1.39111 1.06369 0.92001 1.24880 0.98656 0.94744 0.95354 1.69896 1.35090 1.37537 1.09353 0.86401 0.84795 0.77806 0.78155 1.19703 1.20859 1.20861 1.46494 1.14302 1.55160 1.18677 1.18148 0.83162 0.79594 0.86779 1.90749 1.51368 1.60071 1.39968 1.20528 0.95332 0.99963 0.95122 1.21418 0.99451 0.97301 0.92055 1.21260 0.95835 0.97429 0.98975 1.19392 0.95787 1.00836 0.93212 1.20169 0.81323 0.98320 0.92642 1.22032 1.04563 0.89546 1.04019 1.45668 1.07750 1.60449 1.24079 1.15807 0.83413 0.78621 0.81462 1.91073 1.29214 1.56685 1.64522 1.44302 1.07911 1.55838 1.26893 1.20577 0.86161 0.77178 0.83786 1.90824 1.12733 1.55091 1.73636 1.20705 0.98966 1.00268 0.92402 1.21271 0.95432 0.94214 0.97341 0.93096 0.95792 0.94333 0.88173 0.94983 0.92562 0.77857 0.84788 0.83951 0.89690 0.90972 0.89219 0.71305 0.72328 0.85678 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.61 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.77 8.73 -34.45 -0.30 -14.07 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -14.03 4.97 -55.88 -0.28 -14.31 16 14 C 0.54 10.36 6.35 -12.33 -0.08 10.28 16 15 O -0.54 -12.15 13.46 5.32 0.07 -12.08 16 16 C -0.11 -1.57 5.87 -104.97 -0.62 -2.19 16 17 C -0.08 -1.04 9.54 -39.18 -0.37 -1.41 16 18 C -0.12 -1.24 9.16 -39.64 -0.36 -1.61 16 19 C -0.09 -0.83 4.90 -104.54 -0.51 -1.34 16 20 C 0.17 1.16 1.16 -133.25 -0.15 1.01 16 21 C -0.14 -0.72 8.97 37.16 0.33 -0.39 16 22 N -0.71 -4.54 5.37 -54.03 -0.29 -4.83 16 23 C 0.71 6.15 8.99 -88.02 -0.79 5.36 16 24 O -0.54 -6.58 18.04 5.34 0.10 -6.49 16 25 N -0.68 -4.91 5.70 -15.79 -0.09 -5.00 16 26 C 0.54 4.42 6.95 -10.56 -0.07 4.35 16 27 O -0.45 -4.67 15.86 5.59 0.09 -4.59 16 28 C -0.11 -0.98 9.33 -39.64 -0.37 -1.35 16 29 C -0.06 -0.80 9.60 -39.18 -0.38 -1.18 16 30 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.39 6.76 6.57 -40.82 -0.27 6.49 16 37 H 0.13 1.54 6.40 -52.49 -0.34 1.20 16 38 H 0.14 1.46 5.59 -52.49 -0.29 1.17 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.44 1.91 8.17 -40.82 -0.33 1.58 16 43 H 0.43 2.31 8.96 -40.82 -0.37 1.94 16 44 H 0.13 0.77 7.09 -52.48 -0.37 0.40 16 45 H 0.14 1.80 7.65 -52.49 -0.40 1.40 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -32.78 370.82 -8.39 -41.17 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.43 Total: 9.26 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.75 Total: -0.33 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.03 Total: -47.76 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.26 Total: -23.15 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.78 -8.39 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183842623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.555 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds