Wall clock time and date at job start Wed Apr 1 2020 03:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47512 * 2 1 4 4 H 1.08994 * 109.46914 * 305.00583 * 3 2 1 5 5 C 1.50694 * 109.47142 * 184.99974 * 3 2 1 6 6 H 1.08001 * 119.99760 * 239.99956 * 5 3 2 7 7 C 1.37872 * 120.00102 * 60.00545 * 5 3 2 8 8 N 1.31511 * 120.00363 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99851 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47480 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46949 * 119.99887 * 9 7 5 12 12 H 1.48497 * 109.47372 * 239.99658 * 9 7 5 13 13 N 1.46506 * 109.46652 * 64.99689 * 3 2 1 14 14 C 1.34777 * 120.00268 * 275.00452 * 13 3 2 15 15 O 1.21552 * 119.99899 * 0.27240 * 14 13 3 16 16 C 1.47846 * 119.99810 * 180.02562 * 14 13 3 17 17 C 1.39574 * 120.14263 * 359.72495 * 16 14 13 18 18 C 1.37965 * 119.84644 * 179.76741 * 17 16 14 19 19 C 1.38361 * 120.14628 * 0.48616 * 18 17 16 20 20 C 1.50697 * 119.85075 * 179.74575 * 19 18 17 21 21 C 1.52999 * 110.53622 * 92.85259 * 20 19 18 22 22 N 1.47313 * 110.59713 * 215.84524 * 20 19 18 23 23 C 1.34527 * 106.62193 * 118.52450 * 22 20 19 24 24 O 1.21528 * 123.77418 * 180.02562 * 23 22 20 25 25 N 1.33796 * 112.45435 * 0.02562 * 23 22 20 26 26 C 1.34763 * 111.64359 * 359.97438 * 25 23 22 27 27 O 1.21238 * 127.15713 * 180.02562 * 26 25 23 28 28 C 1.38353 * 120.29260 * 359.76258 * 19 18 17 29 29 C 1.37966 * 120.14854 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.47158 * 59.99740 * 1 2 3 31 31 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47163 * 300.00052 * 1 2 3 33 33 H 1.09004 * 109.47334 * 240.00479 * 2 1 3 34 34 H 1.09000 * 109.47158 * 120.00260 * 2 1 3 35 35 H 0.96995 * 120.00335 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99689 * 95.00568 * 13 3 2 37 37 H 1.07989 * 120.07782 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.92461 * 180.22897 * 18 17 16 39 39 H 1.08998 * 109.47687 * 59.99623 * 21 20 19 40 40 H 1.09003 * 109.47315 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.47070 * 299.99289 * 21 20 19 42 42 H 0.96999 * 126.69144 * 298.51058 * 22 20 19 43 43 H 0.96997 * 124.17247 * 180.02562 * 25 23 22 44 44 H 1.08004 * 119.92940 * 179.97438 * 28 19 18 45 45 H 1.07999 * 120.07558 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3817 10 1 6.5988 1.5460 -0.1941 11 1 6.4970 -0.5177 -1.4630 12 1 6.3991 1.6167 -2.6101 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3430 2.6279 0.4339 16 6 0.0442 3.3258 2.6302 17 6 0.9314 3.3598 3.7072 18 6 0.5621 3.9829 4.8815 19 6 -0.6882 4.5643 4.9962 20 6 -1.0867 5.2381 6.2839 21 6 -0.7610 6.7320 6.2311 22 7 -2.5185 5.0260 6.5582 23 6 -2.5921 4.3527 7.7205 24 8 -3.6371 4.0134 8.2397 25 7 -1.3860 4.0984 8.2410 26 6 -0.3972 4.5834 7.4644 27 8 0.7959 4.5110 7.6675 28 6 -1.5741 4.5295 3.9342 29 6 -1.2158 3.9134 2.7528 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8293 -0.0617 -2.9495 36 1 2.2719 2.1231 1.9978 37 1 1.9058 2.9025 3.6204 38 1 1.2490 4.0132 5.7144 39 1 -1.3050 7.1937 5.4072 40 1 -1.0562 7.2017 7.1694 41 1 0.3102 6.8652 6.0792 42 1 -3.2631 5.3156 6.0081 43 1 -1.2414 3.6230 9.0740 44 1 -2.5488 4.9848 4.0303 45 1 -1.9085 3.8866 1.9246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183842623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:57 Heat of formation + Delta-G solvation = -80.298109 kcal Electronic energy + Delta-G solvation = -29928.891837 eV Core-core repulsion = 25718.041454 eV Total energy + Delta-G solvation = -4210.850383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.71236 -41.21496 -40.01774 -39.43018 -37.54203 -36.93276 -35.55283 -34.38476 -33.17185 -32.53355 -31.83467 -30.61093 -28.89108 -26.41098 -25.34450 -24.47983 -24.25398 -23.19214 -22.34846 -21.59430 -21.05490 -19.60542 -19.34360 -18.25237 -17.84390 -17.65296 -17.37835 -17.08799 -16.85497 -16.34493 -16.27556 -16.24490 -15.68312 -15.50147 -15.31746 -14.97180 -14.62159 -14.58118 -14.37544 -13.98274 -13.67598 -13.55675 -13.48301 -13.28137 -13.17658 -12.88378 -12.75885 -12.68933 -12.36104 -12.15918 -12.07033 -12.01590 -11.60698 -11.52800 -11.31358 -11.05506 -10.80908 -10.67238 -10.53980 -10.04161 -9.99951 -9.62322 -8.16869 -6.34132 -0.30343 0.31771 0.43209 1.35102 1.43958 1.45514 1.56970 1.80643 1.89043 2.10873 2.33990 2.58594 2.74382 2.84454 3.13037 3.15247 3.72453 3.80207 3.87914 3.98130 4.16553 4.31249 4.43087 4.47745 4.55735 4.60700 4.71191 4.72474 4.74777 4.95777 5.00177 5.05198 5.15704 5.21391 5.23206 5.26215 5.37557 5.42342 5.54056 5.59773 5.71757 5.76026 5.79007 5.81571 5.91384 6.15415 6.28590 6.73382 6.93406 7.05680 7.31880 7.51091 8.88793 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.002414 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.723711 B =11595.168819 C =12281.256376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.699 5.699 14 C 0.536 3.464 15 O -0.582 6.582 16 C -0.132 4.132 17 C -0.083 4.083 18 C -0.116 4.116 19 C -0.075 4.075 20 C 0.173 3.827 21 C -0.143 4.143 22 N -0.698 5.698 23 C 0.709 3.291 24 O -0.576 6.576 25 N -0.671 5.671 26 C 0.539 3.461 27 O -0.474 6.474 28 C -0.091 4.091 29 C -0.070 4.070 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.401 0.599 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.453 0.547 43 H 0.442 0.558 44 H 0.164 0.836 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 12.708 21.089 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.347 5.347 14 C 0.324 3.676 15 O -0.464 6.464 16 C -0.135 4.135 17 C -0.102 4.102 18 C -0.134 4.134 19 C -0.077 4.077 20 C 0.082 3.918 21 C -0.201 4.201 22 N -0.364 5.364 23 C 0.409 3.591 24 O -0.452 6.452 25 N -0.342 5.342 26 C 0.324 3.676 27 O -0.344 6.344 28 C -0.109 4.109 29 C -0.089 4.089 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.237 0.763 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.301 0.699 43 H 0.286 0.714 44 H 0.181 0.819 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.327 12.402 20.560 25.759 hybrid contribution 0.980 -0.582 -0.309 1.181 sum -8.346 11.820 20.251 24.889 Atomic orbital electron populations 1.21679 0.96992 0.99157 1.00259 1.21794 0.93757 0.99137 1.01347 1.18413 0.93774 0.89177 0.81146 0.98085 1.21589 0.91321 1.38948 1.06730 0.91041 1.25750 1.03262 0.94352 0.95014 1.70044 1.36999 1.38322 1.09896 0.85338 0.79188 0.77815 0.78245 1.18407 1.20511 1.20996 1.46239 1.15314 1.55465 1.17708 1.18819 0.82095 0.78675 0.87984 1.90717 1.52311 1.61500 1.41900 1.20164 0.97224 1.02479 0.93657 1.21444 0.99286 0.97491 0.91988 1.21347 0.96681 0.97101 0.98298 1.19621 0.94961 0.99093 0.93975 1.20166 0.81325 0.99466 0.90872 1.22102 1.04818 0.87607 1.05580 1.45601 1.07850 1.59528 1.23392 1.15865 0.83082 0.78399 0.81775 1.91062 1.30463 1.58153 1.65568 1.44234 1.07362 1.55420 1.27149 1.20707 0.85910 0.76853 0.84106 1.90825 1.13568 1.55827 1.74202 1.20983 1.00366 0.98814 0.90739 1.21333 0.94461 0.94554 0.98525 0.95337 0.93598 0.93950 0.90840 0.94133 0.92567 0.76269 0.84379 0.83218 0.87902 0.89662 0.89377 0.69893 0.71408 0.81886 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.98 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.81 16 3 C 0.28 14.17 2.24 44.24 0.10 14.27 16 4 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 5 C -0.55 -28.67 8.73 25.60 0.22 -28.45 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.88 5.29 84.65 0.45 1.32 16 8 N -0.91 -51.87 11.29 21.44 0.24 -51.63 16 9 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.70 -28.80 4.97 -448.97 -2.23 -31.03 16 14 C 0.54 21.25 6.35 86.79 0.55 21.80 16 15 O -0.58 -27.32 13.46 -3.88 -0.05 -27.37 16 16 C -0.13 -3.86 5.87 -20.09 -0.12 -3.98 16 17 C -0.08 -1.98 9.54 22.53 0.21 -1.76 16 18 C -0.12 -2.20 9.16 22.23 0.20 -2.00 16 19 C -0.07 -1.13 4.90 -19.81 -0.10 -1.23 16 20 C 0.17 1.80 1.16 2.23 0.00 1.81 16 21 C -0.14 -0.87 8.97 71.98 0.65 -0.23 16 22 N -0.70 -6.38 5.37 -443.27 -2.38 -8.76 16 23 C 0.71 10.50 8.99 179.44 1.61 12.11 16 24 O -0.58 -12.95 18.04 -3.80 -0.07 -13.02 16 25 N -0.67 -8.10 5.70 -441.13 -2.52 -10.62 16 26 C 0.54 7.38 6.95 87.94 0.61 7.99 16 27 O -0.47 -8.66 15.86 -2.90 -0.05 -8.70 16 28 C -0.09 -1.40 9.33 22.23 0.21 -1.20 16 29 C -0.07 -1.67 9.60 22.53 0.22 -1.45 16 30 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.85 5.64 -2.39 -0.01 1.84 16 33 H 0.07 4.04 5.95 -2.38 -0.01 4.03 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.40 14.09 6.57 -92.71 -0.61 13.48 16 37 H 0.14 3.05 6.40 -2.92 -0.02 3.04 16 38 H 0.15 2.70 5.59 -2.91 -0.02 2.69 16 39 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.45 2.06 8.17 -92.71 -0.76 1.30 16 43 H 0.44 3.85 8.96 -92.71 -0.83 3.02 16 44 H 0.16 1.26 7.09 -2.91 -0.02 1.24 16 45 H 0.13 3.37 7.65 -2.91 -0.02 3.35 16 Total: -1.00 -73.87 370.82 -0.53 -74.41 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -1.11 Total: 24.81 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 5.60 Total: 8.23 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -6.88 Total: -102.04 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.17 Total: -49.10 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -73.87 -0.53 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183842623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.891 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds