Wall clock time and date at job start Wed Apr 1 2020 03:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 H 1.08993 * 109.47856 * 305.00740 * 3 2 1 5 5 C 1.50700 * 109.47058 * 184.99893 * 3 2 1 6 6 H 1.07997 * 120.00412 * 240.00279 * 5 3 2 7 7 C 1.37876 * 119.99441 * 60.00835 * 5 3 2 8 8 N 1.31511 * 120.00611 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99723 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47273 * 59.99868 * 9 7 5 11 11 H 1.48504 * 109.47038 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47228 * 299.99507 * 9 7 5 13 13 N 1.46504 * 109.46690 * 65.00463 * 3 2 1 14 14 C 1.34775 * 120.00229 * 274.99733 * 13 3 2 15 15 O 1.21580 * 119.99959 * 0.02562 * 14 13 3 16 16 C 1.47654 * 120.00398 * 180.02562 * 14 13 3 17 17 C 1.39875 * 120.03529 * 359.97438 * 16 14 13 18 18 C 1.37525 * 120.10022 * 180.02562 * 17 16 14 19 19 C 1.39343 * 120.24862 * 0.02562 * 18 17 16 20 20 C 1.39803 * 119.93961 * 359.97438 * 19 18 17 21 21 C 1.38687 * 119.86722 * 0.02562 * 20 19 18 22 22 N 1.39300 * 120.56530 * 180.02562 * 20 19 18 23 23 H 0.97006 * 119.97099 * 180.02562 * 22 20 19 24 24 C 1.34855 * 120.05778 * 0.02562 * 22 20 19 25 25 O 1.21460 * 120.35879 * 179.97438 * 24 22 20 26 26 C 1.49188 * 119.27843 * 359.97438 * 24 22 20 27 27 O 1.21437 * 120.32140 * 180.02562 * 26 24 22 28 28 N 1.34813 * 119.35337 * 359.97438 * 26 24 22 29 29 C 1.46496 * 119.89620 * 179.97438 * 28 26 24 30 30 C 1.53004 * 109.47317 * 270.01723 * 29 28 26 31 31 H 1.09004 * 109.47389 * 59.99182 * 1 2 3 32 32 H 1.08996 * 109.47466 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46860 * 299.99406 * 1 2 3 34 34 H 1.09002 * 109.46860 * 240.00594 * 2 1 3 35 35 H 1.08992 * 109.47346 * 120.00494 * 2 1 3 36 36 H 0.96998 * 120.00197 * 179.97438 * 8 7 5 37 37 H 0.96999 * 119.99919 * 94.99773 * 13 3 2 38 38 H 1.08002 * 119.95630 * 359.97438 * 17 16 14 39 39 H 1.08003 * 119.87770 * 179.72385 * 18 17 16 40 40 H 1.07999 * 120.04529 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47807 * 30.02532 * 29 28 26 42 42 H 1.09011 * 109.46687 * 150.02467 * 29 28 26 43 43 H 1.08994 * 109.47296 * 179.97438 * 30 29 28 44 44 H 1.08997 * 109.47342 * 300.01093 * 30 29 28 45 45 H 1.09005 * 109.46653 * 60.00250 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 -0.8416 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1431 0.8785 -1.2280 8 7 3.4061 0.3369 -2.1730 9 14 6.0048 0.8814 -1.3819 10 1 6.5975 0.1473 -0.2352 11 1 6.3976 0.2180 -2.6512 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3415 2.6318 0.4324 16 6 0.0448 3.3248 2.6288 17 6 0.9375 3.3621 3.7049 18 6 0.5751 3.9765 4.8807 19 6 -0.6820 4.5642 5.0071 20 6 -1.5791 4.5304 3.9354 21 6 -1.2148 3.9111 2.7491 22 7 -2.8388 5.1142 4.0473 23 1 -3.4546 5.0854 3.2983 24 6 -3.2032 5.7194 5.1960 25 8 -4.3001 6.2306 5.2995 26 6 -2.2442 5.7542 6.3384 27 8 -2.5527 6.2938 7.3816 28 7 -1.0322 5.1800 6.2015 29 6 -0.0811 5.2076 7.3154 30 6 0.7855 6.4646 7.2150 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.8292 -0.0608 -2.9500 37 1 2.2720 2.1230 1.9979 38 1 1.9126 2.9071 3.6127 39 1 1.2655 3.9994 5.7109 40 1 -1.9056 3.8830 1.9195 41 1 -0.6266 5.2168 8.2590 42 1 0.5550 4.3234 7.2720 43 1 1.4928 6.4854 8.0440 44 1 1.3310 6.4554 6.2714 45 1 0.1495 7.3488 7.2583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183843728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:44 Heat of formation + Delta-G solvation = -67.812595 kcal Electronic energy + Delta-G solvation = -30022.327584 eV Core-core repulsion = 25812.018613 eV Total energy + Delta-G solvation = -4210.308971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26062 -39.95249 -39.21149 -38.72216 -36.30251 -35.78587 -35.14500 -32.55164 -32.00518 -31.17885 -30.55573 -29.54009 -27.04934 -26.27090 -24.56233 -23.74762 -23.01607 -22.29024 -21.14186 -19.88809 -19.66048 -18.91585 -18.45267 -17.30492 -17.13997 -16.69582 -16.06320 -15.96658 -15.65095 -15.17899 -14.88755 -14.83067 -14.74607 -14.65594 -14.21577 -13.88923 -13.72027 -13.47517 -13.14445 -13.04391 -12.73472 -12.52136 -12.19465 -12.00545 -11.73540 -11.62838 -11.51829 -11.31735 -11.31095 -11.07049 -10.90307 -10.73194 -10.40759 -10.31524 -10.25651 -9.71343 -9.28871 -9.13820 -8.93354 -8.57739 -8.17604 -7.92238 -6.19579 -4.29770 0.39230 0.61271 1.21240 1.81696 2.35872 2.45499 3.13600 3.20228 3.26488 3.26670 3.36246 3.83248 3.91757 4.09674 4.28549 4.41751 4.53420 4.62719 4.80318 4.84767 4.94039 4.96475 5.12057 5.19699 5.22797 5.36126 5.39088 5.68330 5.76561 5.79902 5.98068 6.10031 6.21793 6.27733 6.32573 6.38595 6.58375 6.67960 6.87403 6.96342 7.11632 7.25560 7.32137 7.40113 7.53084 7.63346 7.80922 8.09668 8.51188 8.67204 8.95773 9.37628 10.85628 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.002537 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.253434 B =11035.369011 C =12167.688397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.697 5.697 14 C 0.542 3.458 15 O -0.541 6.541 16 C -0.106 4.106 17 C -0.071 4.071 18 C -0.129 4.129 19 C 0.133 3.867 20 C 0.105 3.895 21 C -0.061 4.061 22 N -0.630 5.630 23 H 0.424 0.576 24 C 0.508 3.492 25 O -0.476 6.476 26 C 0.505 3.495 27 O -0.472 6.472 28 N -0.522 5.522 29 C 0.093 3.907 30 C -0.172 4.172 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.032 0.968 36 H 0.266 0.734 37 H 0.388 0.612 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.117 6.696 16.275 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.345 5.345 14 C 0.326 3.674 15 O -0.421 6.421 16 C -0.110 4.110 17 C -0.091 4.091 18 C -0.150 4.150 19 C 0.035 3.965 20 C 0.006 3.994 21 C -0.083 4.083 22 N -0.279 5.279 23 H 0.264 0.736 24 C 0.290 3.710 25 O -0.346 6.346 26 C 0.288 3.712 27 O -0.341 6.341 28 N -0.248 5.248 29 C -0.027 4.027 30 C -0.229 4.229 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.222 0.778 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.170 0.830 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.433 7.262 16.329 18.678 hybrid contribution 1.116 -0.101 -0.137 1.128 sum -4.317 7.161 16.192 18.224 Atomic orbital electron populations 1.21849 0.98317 0.98167 1.01216 1.21944 0.92638 0.99670 1.02425 1.18844 0.94314 0.89234 0.80674 0.93062 1.21165 0.90573 1.39407 1.06435 0.92079 1.24873 0.98614 0.94710 0.95353 1.69872 1.35304 1.37320 1.09315 0.86521 0.84794 0.78346 0.77519 1.20132 1.21128 1.20160 1.46472 1.14154 1.55165 1.18715 1.17956 0.83241 0.79613 0.86542 1.90772 1.51438 1.60066 1.39794 1.20159 0.94306 1.00880 0.95701 1.21253 0.99638 0.96829 0.91388 1.20680 0.93999 1.00787 0.99512 1.17536 0.95033 0.99224 0.84731 1.17231 0.85413 1.01915 0.94827 1.20777 0.96889 0.95571 0.95076 1.43695 1.15255 1.52562 1.16374 0.73552 1.20154 0.88009 0.79730 0.83084 1.90907 1.20292 1.42805 1.80577 1.20188 0.81725 0.80202 0.89037 1.90845 1.75391 1.40859 1.27042 1.45690 1.15010 1.50828 1.13311 1.21924 0.91428 1.00433 0.88955 1.22154 1.00032 0.97462 1.03297 0.93096 0.95786 0.94291 0.88196 0.94933 0.92411 0.77844 0.84003 0.83797 0.83019 0.88356 0.88399 0.90380 0.91531 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.54 16 2 C -0.13 -2.89 5.45 -26.73 -0.15 -3.03 16 3 C 0.27 6.24 2.24 -69.08 -0.15 6.08 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.15 8.73 -34.44 -0.30 -13.45 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.48 11.29 55.43 0.63 -22.85 16 9 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.70 -12.64 4.97 -55.94 -0.28 -12.92 16 14 C 0.54 9.32 6.33 -12.42 -0.08 9.24 16 15 O -0.54 -11.17 13.46 5.30 0.07 -11.09 16 16 C -0.11 -1.32 5.87 -104.99 -0.62 -1.94 16 17 C -0.07 -0.67 9.52 -39.23 -0.37 -1.04 16 18 C -0.13 -0.99 9.16 -39.43 -0.36 -1.35 16 19 C 0.13 1.21 6.53 -83.68 -0.55 0.66 16 20 C 0.10 1.03 6.61 -83.72 -0.55 0.47 16 21 C -0.06 -0.68 9.40 -38.96 -0.37 -1.04 16 22 N -0.63 -6.00 5.39 -10.27 -0.06 -6.06 16 23 H 0.42 3.22 8.79 -40.82 -0.36 2.86 16 24 C 0.51 6.14 8.01 -11.67 -0.09 6.05 16 25 O -0.48 -7.18 17.81 -10.85 -0.19 -7.37 16 26 C 0.51 6.00 7.71 -11.69 -0.09 5.91 16 27 O -0.47 -6.77 16.56 -10.83 -0.18 -6.95 16 28 N -0.52 -4.75 2.67 -113.90 -0.30 -5.06 16 29 C 0.09 0.59 5.55 -4.04 -0.02 0.57 16 30 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 31 H 0.05 1.13 7.84 -51.93 -0.41 0.72 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 34 H 0.10 2.53 5.95 -51.93 -0.31 2.22 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.39 5.86 6.56 -40.82 -0.27 5.59 16 38 H 0.14 1.13 6.39 -52.49 -0.34 0.79 16 39 H 0.14 0.69 6.04 -52.48 -0.32 0.37 16 40 H 0.15 1.65 7.63 -52.49 -0.40 1.25 16 41 H 0.10 0.67 7.43 -51.93 -0.39 0.28 16 42 H 0.10 0.39 6.12 -51.92 -0.32 0.07 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -31.89 370.90 -8.29 -40.17 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.44 Total: 6.45 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -3.10 Total: 5.62 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.01 Total: -46.89 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.30 Total: -25.42 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.89 -8.29 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183843728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.641 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds