Wall clock time and date at job start Wed Apr 1 2020 03:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 H 1.08993 * 109.47856 * 305.00740 * 3 2 1 5 5 C 1.50700 * 109.47058 * 184.99893 * 3 2 1 6 6 H 1.07997 * 120.00412 * 240.00279 * 5 3 2 7 7 C 1.37876 * 119.99441 * 60.00835 * 5 3 2 8 8 N 1.31511 * 120.00611 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99723 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47273 * 59.99868 * 9 7 5 11 11 H 1.48504 * 109.47038 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47228 * 299.99507 * 9 7 5 13 13 N 1.46504 * 109.46690 * 65.00463 * 3 2 1 14 14 C 1.34775 * 120.00229 * 274.99733 * 13 3 2 15 15 O 1.21580 * 119.99959 * 0.02562 * 14 13 3 16 16 C 1.47654 * 120.00398 * 180.02562 * 14 13 3 17 17 C 1.39875 * 120.03529 * 359.97438 * 16 14 13 18 18 C 1.37525 * 120.10022 * 180.02562 * 17 16 14 19 19 C 1.39343 * 120.24862 * 0.02562 * 18 17 16 20 20 C 1.39803 * 119.93961 * 359.97438 * 19 18 17 21 21 C 1.38687 * 119.86722 * 0.02562 * 20 19 18 22 22 N 1.39300 * 120.56530 * 180.02562 * 20 19 18 23 23 H 0.97006 * 119.97099 * 180.02562 * 22 20 19 24 24 C 1.34855 * 120.05778 * 0.02562 * 22 20 19 25 25 O 1.21460 * 120.35879 * 179.97438 * 24 22 20 26 26 C 1.49188 * 119.27843 * 359.97438 * 24 22 20 27 27 O 1.21437 * 120.32140 * 180.02562 * 26 24 22 28 28 N 1.34813 * 119.35337 * 359.97438 * 26 24 22 29 29 C 1.46496 * 119.89620 * 179.97438 * 28 26 24 30 30 C 1.53004 * 109.47317 * 270.01723 * 29 28 26 31 31 H 1.09004 * 109.47389 * 59.99182 * 1 2 3 32 32 H 1.08996 * 109.47466 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46860 * 299.99406 * 1 2 3 34 34 H 1.09002 * 109.46860 * 240.00594 * 2 1 3 35 35 H 1.08992 * 109.47346 * 120.00494 * 2 1 3 36 36 H 0.96998 * 120.00197 * 179.97438 * 8 7 5 37 37 H 0.96999 * 119.99919 * 94.99773 * 13 3 2 38 38 H 1.08002 * 119.95630 * 359.97438 * 17 16 14 39 39 H 1.08003 * 119.87770 * 179.72385 * 18 17 16 40 40 H 1.07999 * 120.04529 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47807 * 30.02532 * 29 28 26 42 42 H 1.09011 * 109.46687 * 150.02467 * 29 28 26 43 43 H 1.08994 * 109.47296 * 179.97438 * 30 29 28 44 44 H 1.08997 * 109.47342 * 300.01093 * 30 29 28 45 45 H 1.09005 * 109.46653 * 60.00250 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9817 -0.8416 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1431 0.8785 -1.2280 8 7 3.4061 0.3369 -2.1730 9 14 6.0048 0.8814 -1.3819 10 1 6.5975 0.1473 -0.2352 11 1 6.3976 0.2180 -2.6512 12 1 6.4994 2.2816 -1.3822 13 7 1.6524 2.0974 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3415 2.6318 0.4324 16 6 0.0448 3.3248 2.6288 17 6 0.9375 3.3621 3.7049 18 6 0.5751 3.9765 4.8807 19 6 -0.6820 4.5642 5.0071 20 6 -1.5791 4.5304 3.9354 21 6 -1.2148 3.9111 2.7491 22 7 -2.8388 5.1142 4.0473 23 1 -3.4546 5.0854 3.2983 24 6 -3.2032 5.7194 5.1960 25 8 -4.3001 6.2306 5.2995 26 6 -2.2442 5.7542 6.3384 27 8 -2.5527 6.2938 7.3816 28 7 -1.0322 5.1800 6.2015 29 6 -0.0811 5.2076 7.3154 30 6 0.7855 6.4646 7.2150 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.8292 -0.0608 -2.9500 37 1 2.2720 2.1230 1.9979 38 1 1.9126 2.9071 3.6127 39 1 1.2655 3.9994 5.7109 40 1 -1.9056 3.8830 1.9195 41 1 -0.6266 5.2168 8.2590 42 1 0.5550 4.3234 7.2720 43 1 1.4928 6.4854 8.0440 44 1 1.3310 6.4554 6.2714 45 1 0.1495 7.3488 7.2583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183843728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:43 Heat of formation + Delta-G solvation = -88.921952 kcal Electronic energy + Delta-G solvation = -30023.242955 eV Core-core repulsion = 25812.018613 eV Total energy + Delta-G solvation = -4211.224341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.12292 -41.10016 -40.14241 -39.88071 -37.29362 -36.76417 -36.66317 -34.27652 -32.92178 -32.52226 -31.39401 -30.59772 -28.78584 -27.03878 -25.68463 -24.87998 -24.31398 -23.02871 -22.40234 -21.34431 -20.72340 -20.08195 -19.39357 -18.61461 -17.96058 -17.51657 -17.48325 -17.21902 -16.92849 -16.33651 -16.21815 -15.98057 -15.66651 -15.60123 -15.35511 -14.93505 -14.70947 -14.53252 -14.36450 -14.03382 -13.89117 -13.63863 -13.42756 -13.12147 -13.04675 -12.97255 -12.86192 -12.60267 -12.45298 -12.22052 -12.14431 -12.02307 -11.99054 -11.61631 -11.49384 -11.24678 -11.00044 -10.75115 -10.46339 -9.74716 -9.59017 -8.97185 -8.10652 -6.27501 -0.52919 -0.24812 0.37948 1.00108 1.49874 1.51001 1.51507 1.53057 1.58923 2.11740 2.36620 2.50973 2.68505 2.83063 3.19760 3.32196 3.74409 3.85029 3.97513 4.08764 4.11961 4.16982 4.31533 4.45406 4.55001 4.57012 4.63969 4.75185 4.81363 4.87821 5.00182 5.02632 5.13112 5.20159 5.25470 5.30295 5.35064 5.41080 5.46135 5.49755 5.62257 5.66869 5.84981 5.87143 5.98682 6.04284 6.23062 6.52605 6.80837 7.02262 7.39263 7.60629 8.94297 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.002537 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.253434 B =11035.369011 C =12167.688397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.279 3.721 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.077 0.923 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.966 3.034 10 H -0.263 1.263 11 H -0.292 1.292 12 H -0.271 1.271 13 N -0.695 5.695 14 C 0.541 3.459 15 O -0.584 6.584 16 C -0.124 4.124 17 C -0.058 4.058 18 C -0.107 4.107 19 C 0.137 3.863 20 C 0.100 3.900 21 C -0.059 4.059 22 N -0.614 5.614 23 H 0.432 0.568 24 C 0.507 3.493 25 O -0.515 6.515 26 C 0.503 3.497 27 O -0.503 6.503 28 N -0.509 5.509 29 C 0.084 3.916 30 C -0.168 4.168 31 H 0.025 0.975 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.405 0.595 38 H 0.163 0.837 39 H 0.186 0.814 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.134 0.866 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.725 6.538 18.959 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.095 0.905 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.218 1.218 12 H -0.197 1.197 13 N -0.344 5.344 14 C 0.328 3.672 15 O -0.466 6.466 16 C -0.128 4.128 17 C -0.078 4.078 18 C -0.127 4.127 19 C 0.039 3.961 20 C 0.002 3.998 21 C -0.080 4.080 22 N -0.263 5.263 23 H 0.274 0.726 24 C 0.289 3.711 25 O -0.388 6.388 26 C 0.286 3.714 27 O -0.376 6.376 28 N -0.234 5.234 29 C -0.035 4.035 30 C -0.226 4.226 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.242 0.758 38 H 0.180 0.820 39 H 0.203 0.797 40 H 0.164 0.836 41 H 0.112 0.888 42 H 0.152 0.848 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.994 7.096 19.042 20.540 hybrid contribution 0.375 -0.033 -0.959 1.031 sum -2.620 7.063 18.082 19.588 Atomic orbital electron populations 1.21691 0.97065 0.99068 1.00354 1.21794 0.93671 0.99214 1.01407 1.18372 0.93618 0.89126 0.81296 0.98212 1.21570 0.91417 1.38727 1.06669 0.90512 1.25729 1.02967 0.94526 0.95175 1.70039 1.37054 1.38454 1.09883 0.85488 0.79546 0.78414 0.77427 1.18725 1.21815 1.19657 1.46144 1.15168 1.55356 1.17691 1.18585 0.82179 0.78699 0.87697 1.90754 1.52492 1.61470 1.41863 1.19741 0.95758 1.02784 0.94551 1.21439 0.99650 0.96074 0.90634 1.21014 0.93459 0.98429 0.99816 1.17777 0.95439 0.98652 0.84269 1.17193 0.85547 1.02200 0.94906 1.20659 0.96504 0.95496 0.95367 1.43602 1.15407 1.51314 1.15994 0.72605 1.20281 0.87676 0.79481 0.83630 1.90884 1.21872 1.44777 1.81297 1.20134 0.82476 0.80315 0.88431 1.90829 1.76130 1.42543 1.28057 1.45780 1.14449 1.49253 1.13941 1.22304 0.91210 1.02317 0.87671 1.22150 0.99858 0.96018 1.04584 0.95601 0.93865 0.93461 0.91214 0.93736 0.92750 0.75800 0.81959 0.79660 0.83635 0.88784 0.84776 0.88103 0.90950 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.51 71.98 0.61 -4.60 16 2 C -0.12 -5.56 5.45 30.59 0.17 -5.39 16 3 C 0.28 13.06 2.24 44.24 0.10 13.16 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -26.45 8.73 25.60 0.22 -26.23 16 6 H 0.08 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -50.09 11.29 21.45 0.24 -49.85 16 9 Si 0.97 39.49 29.54 68.60 2.03 41.52 16 10 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 13 N -0.69 -24.54 4.97 -449.15 -2.23 -26.77 16 14 C 0.54 18.37 6.33 86.73 0.55 18.92 16 15 O -0.58 -24.78 13.46 -3.97 -0.05 -24.83 16 16 C -0.12 -2.84 5.87 -20.10 -0.12 -2.96 16 17 C -0.06 -0.85 9.52 22.50 0.21 -0.63 16 18 C -0.11 -1.08 9.16 22.37 0.20 -0.87 16 19 C 0.14 2.02 6.53 38.67 0.25 2.27 16 20 C 0.10 1.77 6.61 38.44 0.25 2.03 16 21 C -0.06 -1.22 9.40 22.67 0.21 -1.01 16 22 N -0.61 -11.26 5.39 -304.66 -1.64 -12.90 16 23 H 0.43 6.46 8.79 -92.70 -0.81 5.65 16 24 C 0.51 12.14 8.01 87.18 0.70 12.84 16 25 O -0.52 -15.93 17.81 11.95 0.21 -15.72 16 26 C 0.50 11.46 7.71 87.18 0.67 12.13 16 27 O -0.50 -14.35 16.56 12.02 0.20 -14.15 16 28 N -0.51 -7.82 2.67 -632.58 -1.69 -9.51 16 29 C 0.08 0.74 5.55 86.38 0.48 1.22 16 30 C -0.17 -1.37 10.24 71.98 0.74 -0.63 16 31 H 0.02 1.17 7.84 -2.38 -0.02 1.15 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.05 1.87 5.64 -2.39 -0.01 1.86 16 34 H 0.07 3.64 5.95 -2.39 -0.01 3.63 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 37 H 0.41 11.22 6.56 -92.71 -0.61 10.61 16 38 H 0.16 1.75 6.39 -2.91 -0.02 1.73 16 39 H 0.19 0.40 6.04 -2.91 -0.02 0.39 16 40 H 0.15 3.18 7.63 -2.91 -0.02 3.16 16 41 H 0.09 1.01 7.43 -2.39 -0.02 0.99 16 42 H 0.13 0.24 6.12 -2.38 -0.01 0.22 16 43 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 Total: -1.00 -73.50 370.90 2.42 -71.08 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.35 Total: 19.63 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 5.71 Total: 21.52 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -5.32 Total: -99.03 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: 0.36 Total: -54.70 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -73.50 2.42 -71.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183843728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.841 kcal (2) G-P(sol) polarization free energy of solvation -73.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds