Wall clock time and date at job start Wed Apr 1 2020 03:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21527 * 119.99885 * 0.02562 * 14 13 3 16 16 C 1.48071 * 119.99991 * 179.97438 * 14 13 3 17 17 C 1.39790 * 119.83936 * 359.72682 * 16 14 13 18 18 C 1.37743 * 120.27474 * 179.76292 * 17 16 14 19 19 C 1.39306 * 119.71541 * 0.50798 * 18 17 16 20 20 C 1.40533 * 120.25973 * 359.74377 * 19 18 17 21 21 C 1.38579 * 119.77614 * 0.02562 * 20 19 18 22 22 N 1.38811 * 118.76531 * 179.97438 * 20 19 18 23 23 H 0.97003 * 119.65325 * 179.97438 * 22 20 19 24 24 C 1.34387 * 120.68284 * 359.97438 * 22 20 19 25 25 O 1.21575 * 118.59283 * 179.97438 * 24 22 20 26 26 N 1.34220 * 122.81846 * 0.04986 * 24 22 20 27 27 C 1.46501 * 119.36113 * 179.97438 * 26 24 22 28 28 C 1.53006 * 109.47044 * 269.97379 * 27 26 24 29 29 C 1.35054 * 121.26910 * 359.94961 * 26 24 22 30 30 O 1.21572 * 120.85206 * 180.02562 * 29 26 24 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 37 37 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 38 38 H 1.08002 * 119.86103 * 359.97438 * 17 16 14 39 39 H 1.07999 * 120.13835 * 180.23133 * 18 17 16 40 40 H 1.08007 * 120.17360 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.47631 * 29.97855 * 27 26 24 42 42 H 1.09006 * 109.46929 * 149.97747 * 27 26 24 43 43 H 1.08998 * 109.46821 * 180.02562 * 28 27 26 44 44 H 1.09000 * 109.47016 * 300.00227 * 28 27 26 45 45 H 1.08998 * 109.46790 * 60.00633 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3408 2.6326 -0.4321 16 6 0.0436 3.3270 -2.6319 17 6 0.9413 3.3675 -3.7027 18 6 0.5846 3.9772 -4.8852 19 6 -0.6728 4.5642 -5.0076 20 6 -1.5775 4.5311 -3.9327 21 6 -1.2151 3.9121 -2.7470 22 7 -2.8219 5.1262 -4.0884 23 1 -3.4565 5.1106 -3.3549 24 6 -3.1565 5.7235 -5.2447 25 8 -4.2566 6.2323 -5.3397 26 7 -2.3289 5.7813 -6.2998 27 6 -2.7722 6.4517 -7.5247 28 6 -3.4618 5.4378 -8.4399 29 6 -1.0951 5.2339 -6.2538 30 8 -0.3515 5.2910 -7.2138 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.8293 -0.0605 2.9501 37 1 2.2718 2.1232 -1.9978 38 1 1.9173 2.9158 -3.6035 39 1 1.2785 4.0039 -5.7123 40 1 -1.9052 3.8834 -1.9166 41 1 -3.4729 7.2471 -7.2704 42 1 -1.9101 6.8774 -8.0383 43 1 -3.7912 5.9365 -9.3514 44 1 -2.7611 4.6425 -8.6942 45 1 -4.3238 5.0122 -7.9263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183890297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:47 Heat of formation + Delta-G solvation = -69.842936 kcal Electronic energy + Delta-G solvation = -29869.443308 eV Core-core repulsion = 25659.046295 eV Total energy + Delta-G solvation = -4210.397013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54304 -40.01043 -39.31376 -38.50611 -35.87199 -35.72569 -35.21709 -32.60409 -32.22893 -31.32520 -30.70162 -29.87478 -27.20658 -25.69888 -24.41039 -23.50269 -23.24041 -22.67443 -21.19110 -19.73349 -19.64474 -18.96316 -18.47027 -17.33544 -17.12463 -16.64374 -16.06773 -15.77356 -15.67283 -15.09247 -14.91217 -14.69841 -14.65589 -14.39772 -14.27832 -14.07998 -13.77130 -13.45031 -13.02431 -12.96219 -12.73603 -12.58720 -12.20153 -11.78017 -11.58756 -11.53453 -11.33116 -11.23488 -11.18396 -11.07470 -10.89113 -10.67273 -10.41691 -10.28320 -10.19964 -9.74187 -9.38842 -9.35288 -9.15628 -8.59870 -8.58607 -8.00139 -6.20166 -4.30337 0.11393 0.82827 1.69342 1.71135 2.40477 2.62154 3.20840 3.22239 3.27047 3.27484 3.64076 3.84991 3.87679 4.25691 4.30471 4.55284 4.72792 4.74275 4.79194 4.83388 4.92953 5.08843 5.09109 5.12066 5.28927 5.46176 5.49303 5.53919 5.72397 5.77492 5.96779 6.04447 6.21042 6.30673 6.34006 6.36529 6.55989 6.85312 6.94259 7.06507 7.08826 7.21186 7.28717 7.51047 7.57497 7.61363 7.78846 8.07848 8.46061 8.64468 8.89873 9.36891 10.85056 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.002335 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.725450 B =11986.591580 C =12755.373469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.694 5.694 14 C 0.536 3.464 15 O -0.535 6.535 16 C -0.045 4.045 17 C -0.124 4.124 18 C -0.020 4.020 19 C -0.186 4.186 20 C 0.188 3.812 21 C -0.111 4.111 22 N -0.642 5.642 23 H 0.437 0.563 24 C 0.707 3.293 25 O -0.545 6.545 26 N -0.557 5.557 27 C 0.106 3.894 28 C -0.166 4.166 29 C 0.566 3.434 30 O -0.491 6.491 31 H 0.050 0.950 32 H 0.024 0.976 33 H 0.037 0.963 34 H 0.101 0.899 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.390 0.610 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 8.405 -16.566 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.341 5.341 14 C 0.320 3.680 15 O -0.414 6.414 16 C -0.049 4.049 17 C -0.144 4.144 18 C -0.039 4.039 19 C -0.193 4.193 20 C 0.088 3.912 21 C -0.132 4.132 22 N -0.289 5.289 23 H 0.278 0.722 24 C 0.408 3.592 25 O -0.419 6.419 26 N -0.302 5.302 27 C -0.015 4.015 28 C -0.224 4.224 29 C 0.358 3.642 30 O -0.364 6.364 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.119 0.881 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.224 0.776 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.399 8.636 -16.429 21.275 hybrid contribution 1.039 -0.112 0.156 1.057 sum -9.360 8.524 -16.272 20.617 Atomic orbital electron populations 1.21851 0.98317 0.98243 1.01157 1.21950 0.92632 0.99595 1.02530 1.18888 0.94458 0.89279 0.80529 0.92973 1.21156 0.90473 1.39482 1.06498 0.92025 1.24874 0.98691 0.94672 0.95326 1.69874 1.35322 1.37294 1.09295 0.86501 0.84689 0.78367 0.77521 1.20148 1.21117 1.20108 1.46521 1.14016 1.54724 1.18860 1.18094 0.83443 0.79949 0.86522 1.90768 1.51393 1.59742 1.39523 1.20473 0.93509 0.95840 0.95107 1.21409 1.00396 1.00465 0.92131 1.20931 0.93237 0.91980 0.97785 1.19511 0.97415 1.09244 0.93084 1.17852 0.84693 0.94143 0.94470 1.20710 0.97523 0.99041 0.95975 1.42751 1.16040 1.54530 1.15589 0.72166 1.15545 0.84253 0.79424 0.79953 1.91043 1.20019 1.49117 1.81727 1.46241 1.15339 1.53540 1.15102 1.21767 1.01274 0.96070 0.82362 1.22086 1.01043 0.99706 0.99609 1.18487 0.80312 0.77395 0.88009 1.90821 1.52089 1.56334 1.37132 0.93059 0.95695 0.94389 0.88091 0.94861 0.92398 0.77635 0.83804 0.83271 0.82885 0.88152 0.88235 0.90435 0.91990 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.51 37.16 0.32 -2.56 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.28 2.24 -69.08 -0.15 6.12 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.29 8.73 -34.44 -0.30 -13.59 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.56 11.29 55.43 0.63 -22.93 16 9 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 N -0.69 -12.85 4.97 -55.80 -0.28 -13.12 16 14 C 0.54 9.41 6.34 -12.23 -0.08 9.33 16 15 O -0.54 -11.09 13.46 5.34 0.07 -11.02 16 16 C -0.04 -0.59 5.88 -104.90 -0.62 -1.21 16 17 C -0.12 -1.35 9.52 -39.18 -0.37 -1.72 16 18 C -0.02 -0.20 9.65 -39.37 -0.38 -0.58 16 19 C -0.19 -2.04 5.89 -104.80 -0.62 -2.65 16 20 C 0.19 1.97 6.66 -83.71 -0.56 1.41 16 21 C -0.11 -1.28 9.48 -39.07 -0.37 -1.65 16 22 N -0.64 -6.02 5.35 -14.39 -0.08 -6.10 16 23 H 0.44 3.16 8.79 -40.82 -0.36 2.80 16 24 C 0.71 7.74 8.33 -87.77 -0.73 7.00 16 25 O -0.55 -6.99 16.49 5.30 0.09 -6.90 16 26 N -0.56 -5.85 2.55 -122.02 -0.31 -6.16 16 27 C 0.11 0.90 5.76 -4.04 -0.02 0.87 16 28 C -0.17 -1.26 10.24 37.16 0.38 -0.88 16 29 C 0.57 6.48 7.65 -12.30 -0.09 6.39 16 30 O -0.49 -6.38 16.17 5.30 0.09 -6.29 16 31 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.76 5.65 -51.93 -0.29 0.46 16 34 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.39 6.10 6.54 -40.82 -0.27 5.83 16 38 H 0.14 1.34 6.36 -52.49 -0.33 1.00 16 39 H 0.15 1.29 7.79 -52.49 -0.41 0.88 16 40 H 0.15 1.69 7.63 -52.48 -0.40 1.29 16 41 H 0.10 0.80 7.30 -51.93 -0.38 0.42 16 42 H 0.10 0.78 7.41 -51.93 -0.38 0.40 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -30.58 372.36 -8.63 -39.22 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.59 Total: 8.14 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -3.84 Total: 4.87 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.04 Total: -48.32 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.24 Total: -24.21 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.58 -8.63 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183890297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.626 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds